Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:38:17 (1428105): wrapper (7.7.26015): starting
15:38:17 (1428105): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 15:38:17] Arguments: --nthreads 9
[2025-11-24 15:38:17] Threads: 9
[2025-11-24 15:38:17] Checking for CVMFS
[2025-11-24 15:38:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 15:38:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 15:38:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 15:38:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 15:38:18] 2.13.2.0 6914 33450 290036 153258 3 391 34073253 40960001 31584 16776704 0 122662523 99.623 117621399 36572 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 15:38:18] CVMFS is ok
[2025-11-24 15:38:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 15:38:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 15:38:18] Further information can be found at the LHC@home message board.
[2025-11-24 15:38:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 15:38:18] Checking for apptainer binary...
[2025-11-24 15:38:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 15:38:18] Running /usr/bin/apptainer --version
[2025-11-24 15:38:18] apptainer version 1.4.4-1.el9
[2025-11-24 15:38:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 15:38:18] c-212-1.aglt2.org
[2025-11-24 15:38:18] apptainer works
[2025-11-24 15:38:18] Set ATHENA_PROC_NUMBER=9
[2025-11-24 15:38:18] Set ATHENA_CORE_NUMBER=9
[2025-11-24 15:38:18] Starting ATLAS job with PandaID=6895367382
[2025-11-24 15:38:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:12:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:12:20] 2025-11-25 18:11:07,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:12:20] 2025-11-25 18:11:08,360 | INFO     | time since job start (77533s) is within the limit (172800.0s)
[2025-11-25 13:12:20] 2025-11-25 18:11:09,735 | INFO     | monitor loop #4643: job 0:6895367382 is in state 'finished'
[2025-11-25 13:12:20] 2025-11-25 18:11:09,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:12:20] 2025-11-25 18:11:10,371 | INFO     | time since job start (77535s) is within the limit (172800.0s)
[2025-11-25 13:12:20] 2025-11-25 18:11:12,258 | INFO     | monitor loop #4644: job 0:6895367382 is in state 'finished'
[2025-11-25 13:12:20] 2025-11-25 18:11:12,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:12:20] 2025-11-25 18:11:12,398 | INFO     | time since job start (77537s) is within the limit (172800.0s)
[2025-11-25 13:12:20] 2025-11-25 18:11:14,408 | INFO     | time since job start (77539s) is within the limit (172800.0s)
[2025-11-25 13:12:20] 2025-11-25 18:11:14,790 | INFO     | monitor loop #4645: job 0:6895367382 is in state 'finished'
[2025-11-25 13:12:20] 2025-11-25 18:11:14,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:12:20] 2025-11-25 18:11:17,412 | INFO     | monitor loop #4646: job 0:6895367382 is in state 'finished'
[2025-11-25 13:12:20] 2025-11-25 18:11:17,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:12:20] 2025-11-25 18:11:19,308 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 13:12:20] 2025-11-25 18:11:19,338 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3028.211697916667
[2025-11-25 13:12:20] 2025-11-25 18:11:19,475 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895367382/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:12:20] 2025-11-25 18:11:19,499 | INFO     | extracted standard info from prmon json
[2025-11-25 13:12:20] 2025-11-25 18:11:19,499 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:12:20] 2025-11-25 18:11:19,499 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:12:20] 2025-11-25 18:11:19,581 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:12:20] 2025-11-25 18:11:19,582 | INFO     | sum of square deviations: 635160856765.2672
[2025-11-25 13:12:20] 2025-11-25 18:11:20,095 | INFO     | sum of deviations: 11362081732153.184
[2025-11-25 13:12:20] 2025-11-25 18:11:20,095 | INFO     | mean x: 1764055521.1897638
[2025-11-25 13:12:20] 2025-11-25 18:11:20,096 | INFO     | mean y: 3269854.1362204724
[2025-11-25 13:12:20] 2025-11-25 18:11:20,096 | INFO     | intersect: -31553056072.323513
[2025-11-25 13:12:20] 2025-11-25 18:11:20,097 | INFO     | chi2: 25.134306327723532
[2025-11-25 13:12:20] 2025-11-25 18:11:20,300 | INFO     | sum of square deviations: 627688931037.8259
[2025-11-25 13:12:20] 2025-11-25 18:11:20,432 | INFO     | monitor loop #4647: job 0:6895367382 is in state 'finished'
[2025-11-25 13:12:20] 2025-11-25 18:11:20,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:12:20] 2025-11-25 18:11:20,643 | INFO     | sum of deviations: 11850162342304.78
[2025-11-25 13:12:20] 2025-11-25 18:11:20,643 | INFO     | mean x: 1764055368.6956522
[2025-11-25 13:12:20] 2025-11-25 18:11:20,643 | INFO     | mean y: 3279813.724110672
[2025-11-25 13:12:20] 2025-11-25 18:11:20,643 | INFO     | intersect: -33300386168.236706
[2025-11-25 13:12:20] 2025-11-25 18:11:20,716 | INFO     | chi2: 21.306467166069325
[2025-11-25 13:12:20] 2025-11-25 18:11:20,716 | INFO     | current chi2=21.306467166069325 (change=15.229539704591094 %)
[2025-11-25 13:12:20] 2025-11-25 18:11:20,716 | INFO     | right removable region: 1264
[2025-11-25 13:12:20] 2025-11-25 18:11:20,717 | INFO     | sum of square deviations: 627687699323.4338
[2025-11-25 13:12:20] 2025-11-25 18:11:21,076 | INFO     | sum of deviations: 10866075470658.447
[2025-11-25 13:12:20] 2025-11-25 18:11:21,077 | INFO     | mean x: 1764055673.6964426
[2025-11-25 13:12:20] 2025-11-25 18:11:21,077 | INFO     | mean y: 3279972.829249012
[2025-11-25 13:12:20] 2025-11-25 18:11:21,077 | INFO     | intersect: -30534775983.165733
[2025-11-25 13:12:20] 2025-11-25 18:11:21,285 | INFO     | chi2: 22.526729864801414
[2025-11-25 13:12:20] 2025-11-25 18:11:21,285 | INFO     | current chi2=22.526729864801414 (change=10.374571030217455 %)
[2025-11-25 13:12:20] 2025-11-25 18:11:21,285 | INFO     | left removable region: 10
[2025-11-25 13:12:20] 2025-11-25 18:11:21,286 | INFO     | sum of square deviations: 611455183919.259
[2025-11-25 13:12:20] 2025-11-25 18:11:21,970 | INFO     | sum of deviations: 11252344167216.082
[2025-11-25 13:12:20] 2025-11-25 18:11:21,971 | INFO     | mean x: 1764055643.2089314
[2025-11-25 13:12:20] 2025-11-25 18:11:21,971 | INFO     | mean y: 3295955.724880383
[2025-11-25 13:12:20] 2025-11-25 18:11:21,971 | INFO     | intersect: -32459853837.650227
[2025-11-25 13:12:20] 2025-11-25 18:11:21,972 | INFO     | chi2: 17.795512733546026
[2025-11-25 13:12:20] 2025-11-25 18:11:21,972 | INFO     | current memory leak: 18.40 B/s (using 1254 data points, chi2=17.80)
[2025-11-25 13:12:20] 2025-11-25 18:11:22,011 | INFO     | could have reported an average CPU frequency of 3029 MHz (46 samples)
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | ..............................
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . Timing measurements:
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . get job = 0 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . initial setup = 5 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . payload setup = 24 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . stage-in = 0 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . payload execution = 77432 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . stage-out = 12 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | . log creation = 2 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,012 | INFO     | ..............................
[2025-11-25 13:12:20] 2025-11-25 18:11:22,763 | INFO     | 
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | job summary report
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | --------------------------------------------------
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | PanDA job id: 6895367382
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | task id: 47556137
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | errors: (none)
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | pilot state: finished 
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | transexitcode: 0
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | exeerrorcode: 0
[2025-11-25 13:12:20] 2025-11-25 18:11:22,774 | INFO     | exeerrordiag: 
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | exitcode: 0
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | exitmsg: OK
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | cpuconsumptiontime: 211200 s
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | nevents: 1000
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | neventsw: 0
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | pid: 1440255
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | pgrp: 1440255
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | corecount: 9
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | event service: False
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 18: 2284627, 22: 2284655, 77464: 2345283, 77465: 2345410, 77478: 2354465, 77479: 2354521, 77508: 2354767}
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | --------------------------------------------------
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | 
[2025-11-25 13:12:20] 2025-11-25 18:11:22,775 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | job 6895367382 has completed (purged errors)
[2025-11-25 13:12:20] 2025-11-25 18:11:22,993 | INFO     | overall cleanup function is called
[2025-11-25 13:12:20] 2025-11-25 18:11:23,069 | INFO     | PID=1433266 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:12:20] 2025-11-25 18:11:23,069 | INFO     | .. there are 33 such processes running
[2025-11-25 13:12:20] 2025-11-25 18:11:24,063 | INFO     | --- collectZombieJob: --- 10, [1440255]
[2025-11-25 13:12:20] 2025-11-25 18:11:24,064 | INFO     | zombie collector waiting for pid 1440255
[2025-11-25 13:12:20] 2025-11-25 18:11:24,064 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:12:20] 2025-11-25 18:11:24,064 | INFO     | collected zombie processes
[2025-11-25 13:12:20] 2025-11-25 18:11:24,064 | INFO     | will attempt to kill all subprocesses of pid=1440255
[2025-11-25 13:12:20] 2025-11-25 18:11:27,094 | INFO     | process IDs to be killed: [1440255] (in reverse order)
[2025-11-25 13:12:20] 2025-11-25 18:11:28,386 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:12:20] 2025-11-25 18:11:28,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:12:20] 2025-11-25 18:11:28,415 | INFO     | did not find any defunct processes belonging to 1440255
[2025-11-25 13:12:20] 2025-11-25 18:11:28,496 | INFO     | did not find any defunct processes belonging to 1440255
[2025-11-25 13:12:20] 2025-11-25 18:11:28,513 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:12:20] 2025-11-25 18:11:28,513 | INFO     | ready for new job
[2025-11-25 13:12:20] 2025-11-25 18:11:28,513 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:12:20] 2025-11-25 18:11:28,562 | INFO     | ***************************************
[2025-11-25 13:12:20] 2025-11-25 18:11:28,562 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:12:20] 2025-11-25 18:11:28,631 | INFO     | ***************************************
[2025-11-25 13:12:20] 2025-11-25 18:11:28,631 | INFO     | 
[2025-11-25 13:12:20] 2025-11-25 18:11:28,684 | INFO     | architecture information:
[2025-11-25 13:12:20] 2025-11-25 18:11:28,701 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:12:20] 2025-11-25 18:11:28,767 | INFO     | cat /etc/os-release:
[2025-11-25 13:12:20] NAME="CentOS Linux"
[2025-11-25 13:12:20] VERSION="7 (Core)"
[2025-11-25 13:12:20] ID="centos"
[2025-11-25 13:12:20] ID_LIKE="rhel fedora"
[2025-11-25 13:12:20] VERSION_ID="7"
[2025-11-25 13:12:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:12:20] ANSI_COLOR="0;31"
[2025-11-25 13:12:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:12:20] HOME_URL="https://www.centos.org/"
[2025-11-25 13:12:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:12:20] 
[2025-11-25 13:12:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:12:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:12:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:12:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:12:20] 
[2025-11-25 13:12:20] 2025-11-25 18:11:28,767 | INFO     | ***************************************
[2025-11-25 13:12:20] 2025-11-25 18:11:29,271 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 13:12:20] 2025-11-25 18:11:29,432 | INFO     | sufficient remaining disk space (120271667200 B)
[2025-11-25 13:12:20] 2025-11-25 18:11:29,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:12:20] 2025-11-25 18:11:29,433 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:12:20] 2025-11-25 18:11:29,433 | INFO     | update_server=False
[2025-11-25 13:12:20] 2025-11-25 18:11:29,433 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:12:20] 2025-11-25 18:11:29,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:12:20] 2025-11-25 18:11:29,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:12:20] 2025-11-25 18:11:29,447 | INFO     | aborting loop
[2025-11-25 13:12:20] 2025-11-25 18:11:30,378 | INFO     | all job control threads have been joined
[2025-11-25 13:12:20] 2025-11-25 18:11:30,438 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:30,455 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:30,532 | INFO     | all data control threads have been joined
[2025-11-25 13:12:20] 2025-11-25 18:11:30,637 | INFO     | all payload control threads have been joined
[2025-11-25 13:12:20] 2025-11-25 18:11:30,642 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:30,669 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:30,814 | INFO     | [job] validate thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:30,814 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,172 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,225 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,413 | INFO     | [job] control thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,417 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,463 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,539 | INFO     | [data] control thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,644 | INFO     | [payload] control thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:31,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:12:20] 2025-11-25 18:11:32,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:12:20] 2025-11-25 18:11:32,865 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:11:36,454 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:12:20] 2025-11-25 18:12:00,126 | INFO     | PID=1433266 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:12:20] 2025-11-25 18:12:00,127 | INFO     | .. there are 33 such processes running
[2025-11-25 13:12:20] 2025-11-25 18:12:00,135 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:12:20] 2025-11-25 18:12:00,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:12:20] 2025-11-25 18:12:00,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:12:20] 2025-11-25 18:12:11,370 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:12:20] 2025-11-25 18:12:11,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718406809408)>', '<ExcThread(monitor, started 140717674452736)>']
[2025-11-25 13:12:20] 2025-11-25 18:12:12,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:12:20] 2025-11-25 18:12:12,239 | INFO     | [monitor] control thread has ended
[2025-11-25 13:12:20] 2025-11-25 18:12:16,491 | INFO     | all workflow threads have been joined
[2025-11-25 13:12:20] 2025-11-25 18:12:16,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:12:20] 2025-11-25 18:12:16,512 | INFO     | traces error code: 0
[2025-11-25 13:12:20] 2025-11-25 18:12:16,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:12:20] 2025-11-25 18:12:18,650 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:12:20] 2025-11-25 18:12:18,670 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:12:20] 2025-11-25 18:12:18,714 [wrapper] pilotpid: 1433266
[2025-11-25 13:12:20] 2025-11-25 18:12:18,726 [wrapper] Pilot exit status: 0
[2025-11-25 13:12:20] 2025-11-25 18:12:18,941 [wrapper] pandaids: 6895367382
[2025-11-25 13:12:20] 2025-11-25 18:12:19,365 [wrapper] cleanup supervisor_pilot 1911509 1433267
[2025-11-25 13:12:20] 2025-11-25 18:12:19,381 [wrapper] Test setup, not cleaning
[2025-11-25 13:12:20] 2025-11-25 18:12:19,409 [wrapper] apfmon messages muted
[2025-11-25 13:12:20] 2025-11-25 18:12:19,448 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:12:20] 2025-11-25 18:12:19,475 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:12:20]  *** Error codes and diagnostics ***
[2025-11-25 13:12:20]     "exeErrorCode": 0,
[2025-11-25 13:12:20]     "exeErrorDiag": "",
[2025-11-25 13:12:20]     "pilotErrorCode": 0,
[2025-11-25 13:12:20]     "pilotErrorDiag": "",
[2025-11-25 13:12:20]  *** Listing of results directory ***
[2025-11-25 13:12:20] total 1325196
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:15 pilot3.tar.gz
[2025-11-25 13:12:20] -rwx------. 1 boincer umatlas     36292 Nov 23 14:17 runpilot2-wrapper.sh
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:17 queuedata.json
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas       100 Nov 24 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:12:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 15:38 run_atlas
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas       105 Nov 24 15:38 job.xml
[2025-11-25 13:12:20] -rw-r--r--. 2 boincer umatlas 409797002 Nov 24 15:38 EVNT.47483658._000862.pool.root.1
[2025-11-25 13:12:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 15:38 start_atlas.sh
[2025-11-25 13:12:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 15:38 shared
[2025-11-25 13:12:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 15:38 input.tar.gz
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas         0 Nov 24 15:38 boinc_lockfile
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 15:38 pandaJob.out
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas        57 Nov 24 15:38 setup.sh.local
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas    991801 Nov 24 15:38 agis_schedconf.cvmfs.json
[2025-11-25 13:12:20] drwx------. 5 boincer umatlas      4096 Nov 24 15:38 pilot3
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas       533 Nov 25 12:40 boinc_task_state.xml
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas      6948 Nov 25 13:01 init_data.xml
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas 918901399 Nov 25 13:09 HITS.47556137._008487.pool.root.1
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas      1077 Nov 25 13:10 memory_monitor_summary.json
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas   1516240 Nov 25 13:10 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas   2453943 Nov 25 13:10 log.47556137._008487.job.log.tgz.1
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas      8640 Nov 25 13:11 heartbeat.json
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas        95 Nov 25 13:12 pilot_heartbeat.json
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 13:12 boinc_mmap_file
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas      4825 Nov 25 13:12 pilotlog.txt
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas        29 Nov 25 13:12 wrapper_checkpoint.txt
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas   9734848 Nov 25 13:12 log.47556137._008487.job.log.1
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas       353 Nov 25 13:12 output.list
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas       620 Nov 25 13:12 runtime_log
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas  12206080 Nov 25 13:12 result.tar.gz
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 13:12 runtime_log.err
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas       665 Nov 25 13:12 I4bLDmhlUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxhIKDma0LNRo.diag
[2025-11-25 13:12:20] -rw-r--r--. 1 boincer umatlas     21909 Nov 25 13:12 stderr.txt
[2025-11-25 13:12:20] HITS file was successfully produced:
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas 918901399 Nov 25 13:09 shared/HITS.pool.root.1
[2025-11-25 13:12:20]  *** Contents of shared directory: ***
[2025-11-25 13:12:20] total 1310088
[2025-11-25 13:12:20] -rw-r--r--. 2 boincer umatlas 409797002 Nov 24 15:38 ATLAS.root_0
[2025-11-25 13:12:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 15:38 start_atlas.sh
[2025-11-25 13:12:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 15:38 input.tar.gz
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas 918901399 Nov 25 13:09 HITS.pool.root.1
[2025-11-25 13:12:20] -rw-------. 1 boincer umatlas  12206080 Nov 25 13:12 result.tar.gz
13:12:21 (1428105): run_atlas exited; CPU time 212107.416080
13:12:21 (1428105): called boinc_finish(0)

</stderr_txt>
]]>

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