Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 21:17:31 (17192): vboxwrapper version 26210
2025-11-24 21:17:31 (17192): BOINC client version: 8.0.2
2025-11-24 21:17:31 (17192): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-24 21:17:32 (17192): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 21:17:32 (17192): Create VM. (boinc_43eabee520e4d1e4, slot#5)
2025-11-24 21:17:32 (17192): Setting Memory Size for VM. (4700MB)
2025-11-24 21:17:33 (17192): Setting CPU Count for VM. (7)
2025-11-24 21:17:33 (17192): Setting Chipset Options for VM.
2025-11-24 21:17:33 (17192): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 21:17:33 (17192): Setting Boot Options for VM.
2025-11-24 21:17:34 (17192): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 21:17:34 (17192): Enabling VM Network Access.
2025-11-24 21:17:35 (17192): Disabling USB Support for VM.
2025-11-24 21:17:35 (17192): Disabling COM Port Support for VM.
2025-11-24 21:17:35 (17192): Disabling LPT Port Support for VM.
2025-11-24 21:17:36 (17192): Disabling Audio Support for VM.
2025-11-24 21:17:36 (17192): Disabling Clipboard Support for VM.
2025-11-24 21:17:36 (17192): Disabling Drag and Drop Support for VM.
2025-11-24 21:17:36 (17192): Adding storage controller(s) to VM.
2025-11-24 21:17:37 (17192): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 21:17:37 (17192): Adding VirtualBox Guest Additions to VM.
2025-11-24 21:17:37 (17192): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 21:17:38 (17192): forwarding host port 65098 to guest port 80
2025-11-24 21:17:38 (17192): Enabling remote desktop for VM.
2025-11-24 21:17:38 (17192): Required extension pack not installed, remote desktop not enabled.
2025-11-24 21:17:38 (17192): Enabling shared directory for VM.
2025-11-24 21:17:39 (17192): Starting VM using VBoxManage interface. (boinc_43eabee520e4d1e4, slot#5)
2025-11-24 21:17:44 (17192): Successfully started VM. (PID = '6256')
2025-11-24 21:17:44 (17192): Reporting VM Process ID to BOINC.
2025-11-24 21:17:44 (17192): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-24 21:17:44 (17192): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 21:17:44 (17192): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 21:17:44 (17192): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 21:17:44 (17192): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 21:17:44 (17192): Detected: Web Application Enabled (http://localhost:65098)
2025-11-24 21:17:44 (17192): Preference change detected
2025-11-24 21:17:44 (17192): Setting CPU throttle for VM. (100%)
2025-11-24 21:17:44 (17192): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 21:17:46 (17192): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 21:17:46 (17192): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 21:17:49 (17192): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 21:17:49 (17192): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 21:17:49 (17192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 21:17:56 (17192): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 21:17:56 (17192): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-24 21:18:03 (17192): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000229 main     Log opened 2025-11-24T21:18:01.704419000Z
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000342 main     OS Product: Linux
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000378 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000407 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000436 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000436 main     Process ID: 1366
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.000437 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 21:18:03 (17192): Guest Log: 00:00:00.001553 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 21:18:04 (17192): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 21:18:04 (17192): Guest Log: [INFO] Mounting shared directory
2025-11-24 21:18:04 (17192): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 21:18:13 (17192): Guest Log: 00:00:10.030858 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 618 557 000ns (GuestNow=1 764 015 493 088 721 000 ns GuestLast=1 764 019 081 707 278 000 ns fSetTimeLastLoop=true )
2025-11-24 21:18:31 (17192): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 21:18:31 (17192): Guest Log: [INFO] Detected branch: prod
2025-11-24 21:18:31 (17192): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 21:18:31 (17192): Guest Log: Copying input files
2025-11-24 21:18:33 (17192): Guest Log: Copied input files into RunAtlas.
2025-11-24 21:18:33 (17192): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 21:18:33 (17192): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 21:18:33 (17192): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 21:18:33 (17192): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 21:18:42 (17192): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 21:18:42 (17192): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 21:18:42 (17192): Guest Log: 2.6.3.0 1668 0 32208 153258 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 21:18:43 (17192): Guest Log: copied the webapp to /var/www
2025-11-24 21:18:43 (17192): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-24 21:18:43 (17192): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-24 21:18:44 (17192): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 21:18:44 (17192): Guest Log:  *** Starting ATLAS job. (PandaID=6895337543 taskID=47556137) ***
2025-11-24 22:57:50 (17192): Status Report: Elapsed Time: '6000.000000'
2025-11-24 22:57:50 (17192): Status Report: CPU Time: '39322.453125'
2025-11-25 00:37:56 (17192): Status Report: Elapsed Time: '12000.000000'
2025-11-25 00:37:56 (17192): Status Report: CPU Time: '81259.437500'
2025-11-25 02:18:01 (17192): Status Report: Elapsed Time: '18000.000000'
2025-11-25 02:18:01 (17192): Status Report: CPU Time: '123184.140625'
2025-11-25 03:58:07 (17192): Status Report: Elapsed Time: '24000.000000'
2025-11-25 03:58:07 (17192): Status Report: CPU Time: '165118.203125'
2025-11-25 04:44:21 (17192): Guest Log:  *** Job finished ***
2025-11-25 04:44:21 (17192): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:06,761 | INFO     | PID=6094 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:06,761 | INFO     | found 0 job(s) in 20 queues
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:06,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:06,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:06,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:06,761 | INFO     | [monitor] control thread has ended
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,571 | INFO     | all workflow threads have been joined
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,571 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,571 | INFO     | traces error code: 0
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,689 [wrapper] ==== pilot stdout END ====
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,695 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,700 [wrapper] pilotpid: 6094
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,705 [wrapper] Pilot exit status: 0
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,726 [wrapper] pandaids: 6895337543
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,760 [wrapper] cleanup supervisor_pilot  3826 6095
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,767 [wrapper] Test setup, not cleaning
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,773 [wrapper] apfmon messages muted
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,778 [wrapper] ==== wrapper stdout END ====
2025-11-25 04:44:21 (17192): Guest Log: 2025-11-25 03:44:09,783 [wrapper] ==== wrapper stderr END ====
2025-11-25 04:44:21 (17192): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 04:44:21 (17192): Guest Log:     "exeErrorCode": 0,
2025-11-25 04:44:21 (17192): Guest Log:     "exeErrorDiag": "",
2025-11-25 04:44:21 (17192): Guest Log:     "pilotErrorCode": 0,
2025-11-25 04:44:21 (17192): Guest Log:     "pilotErrorDiag": "",
2025-11-25 04:44:21 (17192): Guest Log:  *** Listing of results directory ***
2025-11-25 04:44:21 (17192): Guest Log: total 922020
2025-11-25 04:44:21 (17192): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 07:52 pilot3.tar.gz
2025-11-25 04:44:21 (17192): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 08:14 runpilot2-wrapper.sh
2025-11-25 04:44:21 (17192): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 08:14 queuedata.json
2025-11-25 04:44:21 (17192): Guest Log: -rwxr-xr-x. 1 atlas atlas    590098 Nov 24 20:18 input.tar.gz
2025-11-25 04:44:21 (17192): Guest Log: -rwxr-xr-x. 1 atlas atlas      8986 Nov 24 20:18 init_data.xml
2025-11-25 04:44:21 (17192): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 20:18 start_atlas.sh
2025-11-25 04:44:21 (17192): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 20:18 EVNT.47483658._000312.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 04:44:21 (17192): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 24 20:18 pandaJob.out
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 24 20:19 agis_schedconf.cvmfs.json
2025-11-25 04:44:21 (17192): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 20:19 pilot3
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas 929976257 Nov 25 03:42 HITS.47556137._003088.pool.root.1
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 25 03:43 memory_monitor_summary.json
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 03:43 pilot_heartbeat.json
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 25 03:43 agis_ddmendpoints.agis.ALL.json
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas   1621924 Nov 25 03:43 log.47556137._003088.job.log.tgz.1
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas      8639 Nov 25 03:43 heartbeat.json
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 25 03:44 pilotlog.txt
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas   3544995 Nov 25 03:44 log.47556137._003088.job.log.1
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 03:44 output.list
2025-11-25 04:44:21 (17192): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 03:44 runtime_log
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas   5181440 Nov 25 03:44 result.tar.gz
2025-11-25 04:44:21 (17192): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 25 03:44 runtime_log.err
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas       658 Nov 25 03:44 0dVMDmawxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJ3JKDm4fgAEm.diag
2025-11-25 04:44:21 (17192): Guest Log: Looking for outputfile HITS.47556137._003088.pool.root.1
2025-11-25 04:44:21 (17192): Guest Log: HITS file was successfully produced
2025-11-25 04:44:21 (17192): Guest Log: -rw-------. 1 atlas atlas 929976257 Nov 25 03:42 /home/atlas/RunAtlas/HITS.47556137._003088.pool.root.1
2025-11-25 04:44:24 (17192): Guest Log: Successfully finished the ATLAS job!
2025-11-25 04:44:24 (17192): Guest Log: Copying the results back to the shared directory!
2025-11-25 04:44:25 (17192): Guest Log:  *** Contents of shared directory: ***
2025-11-25 04:44:25 (17192): Guest Log: total 1313460
2025-11-25 04:44:25 (17192): Guest Log: -rwxrwxrwx. 1 root root 409200132 Nov 24 20:17 ATLAS.root_0
2025-11-25 04:44:25 (17192): Guest Log: -rwxrwxrwx. 1 root root 929976257 Nov 25  2025 HITS.pool.root.1
2025-11-25 04:44:25 (17192): Guest Log: -rwxrwxrwx. 1 root root      8986 Nov 24 20:17 init_data.xml
2025-11-25 04:44:25 (17192): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 24 18:19 input.tar.gz
2025-11-25 04:44:25 (17192): Guest Log: -rwxrwxrwx. 1 root root   5181440 Nov 25  2025 result.tar.gz
2025-11-25 04:44:25 (17192): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 18:19 start_atlas.sh
2025-11-25 04:44:25 (17192): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 04:44:25 (17192): VM Completion File Detected.
2025-11-25 04:44:25 (17192): Powering off VM.
2025-11-25 04:44:26 (17192): Successfully stopped VM.
2025-11-25 04:44:26 (17192): Deregistering VM. (boinc_43eabee520e4d1e4, slot#5)
2025-11-25 04:44:27 (17192): Removing network bandwidth throttle group from VM.
2025-11-25 04:44:27 (17192): Removing VM from VirtualBox.
2025-11-25 04:44:32 (17192): called boinc_finish(0)

</stderr_txt>
]]>

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