Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 09:54:35 (71817): vboxwrapper version 26210
2025-11-24 09:54:35 (71817): BOINC client version: 8.2.5
2025-11-24 09:54:35 (71817): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-11-24 09:54:35 (71817): Detected: Sandbox Configuration Enabled
2025-11-24 09:54:36 (71817): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 09:54:36 (71817): Create VM. (boinc_49fa8611c7157d9e, slot#2)
2025-11-24 09:54:36 (71817): Setting Memory Size for VM. (4200MB)
2025-11-24 09:54:36 (71817): Setting CPU Count for VM. (2)
2025-11-24 09:54:37 (71817): Setting Chipset Options for VM.
2025-11-24 09:54:37 (71817): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 09:54:37 (71817): Setting Boot Options for VM.
2025-11-24 09:54:37 (71817): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 09:54:37 (71817): Enabling VM Network Access.
2025-11-24 09:54:38 (71817): Disabling USB Support for VM.
2025-11-24 09:54:38 (71817): Disabling COM Port Support for VM.
2025-11-24 09:54:38 (71817): Disabling Audio Support for VM.
2025-11-24 09:54:38 (71817): Disabling Clipboard Support for VM.
2025-11-24 09:54:38 (71817): Disabling Drag and Drop Support for VM.
2025-11-24 09:54:38 (71817): Adding storage controller(s) to VM.
2025-11-24 09:54:39 (71817): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 09:54:40 (71817): Adding VirtualBox Guest Additions to VM.
2025-11-24 09:54:40 (71817): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 09:54:40 (71817): forwarding host port 53176 to guest port 80
2025-11-24 09:54:40 (71817): Enabling remote desktop for VM.
2025-11-24 09:54:41 (71817): Required extension pack not installed, remote desktop not enabled.
2025-11-24 09:54:41 (71817): Enabling shared directory for VM.
2025-11-24 09:54:41 (71817): Starting VM using VBoxManage interface. (boinc_49fa8611c7157d9e, slot#2)
2025-11-24 09:54:50 (71817): Successfully started VM. (PID = '71902')
2025-11-24 09:54:50 (71817): Reporting VM Process ID to BOINC.
2025-11-24 09:54:51 (71817): Guest Log: BIOS: VirtualBox 7.0.12
2025-11-24 09:54:51 (71817): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 09:54:51 (71817): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 09:54:51 (71817): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 09:54:51 (71817): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 09:54:51 (71817): Detected: Web Application Enabled (http://localhost:53176)
2025-11-24 09:54:51 (71817): Preference change detected
2025-11-24 09:54:51 (71817): Setting CPU throttle for VM. (100%)
2025-11-24 09:54:51 (71817): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 09:54:53 (71817): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 09:54:53 (71817): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 09:54:57 (71817): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 09:54:57 (71817): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 09:54:58 (71817): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 09:55:14 (71817): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 09:55:14 (71817): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 09:55:47 (71817): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000137 main     Log opened 2025-11-24T17:55:44.660290000Z
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000243 main     OS Product: Linux
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000283 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000320 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000357 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000358 main     Process ID: 1266
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.000358 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 09:55:47 (71817): Guest Log: 00:00:00.001171 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 09:55:47 (71817): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 09:55:47 (71817): Guest Log: [INFO] Mounting shared directory
2025-11-24 09:55:47 (71817): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 09:55:57 (71817): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 09:55:57 (71817): Guest Log: [INFO] Detected branch: prod
2025-11-24 09:55:57 (71817): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 09:55:57 (71817): Guest Log: Copying input files
2025-11-24 09:57:54 (71817): Guest Log: Copied input files into RunAtlas.
2025-11-24 09:57:54 (71817): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 09:57:54 (71817): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 09:57:54 (71817): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 09:57:54 (71817): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 09:58:04 (71817): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 09:58:04 (71817): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 09:58:04 (71817): Guest Log: 2.6.3.0 1546 2 32244 153254 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 09:58:11 (71817): Guest Log: copied the webapp to /var/www
2025-11-24 09:58:11 (71817): Guest Log: ATHENA_PROC_NUMBER=2
2025-11-24 09:58:11 (71817): Guest Log: ATHENA_CORE_NUMBER=2
2025-11-24 09:58:12 (71817): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 09:58:12 (71817): Guest Log:  *** Starting ATLAS job. (PandaID=6893879187 taskID=47523449) ***
2025-11-24 11:34:51 (71817): Status Report: Elapsed Time: '6000.000000'
2025-11-24 11:34:51 (71817): Status Report: CPU Time: '10793.540000'
2025-11-24 13:14:51 (71817): Status Report: Elapsed Time: '12000.330679'
2025-11-24 13:14:51 (71817): Status Report: CPU Time: '22745.670000'
2025-11-24 13:50:53 (71817): Preference change detected
2025-11-24 13:50:53 (71817): Setting CPU throttle for VM. (100%)
2025-11-24 13:50:54 (71817): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 14:54:51 (71817): Status Report: Elapsed Time: '18000.330679'
2025-11-24 14:54:51 (71817): Status Report: CPU Time: '34690.020000'
2025-11-24 16:34:52 (71817): Status Report: Elapsed Time: '24000.330679'
2025-11-24 16:34:52 (71817): Status Report: CPU Time: '46575.620000'
2025-11-24 18:14:52 (71817): Status Report: Elapsed Time: '30000.330679'
2025-11-24 18:14:52 (71817): Status Report: CPU Time: '58515.580000'
2025-11-24 19:54:52 (71817): Status Report: Elapsed Time: '36000.330679'
2025-11-24 19:54:52 (71817): Status Report: CPU Time: '70475.660000'
2025-11-24 21:34:53 (71817): Status Report: Elapsed Time: '42000.330679'
2025-11-24 21:34:53 (71817): Status Report: CPU Time: '82365.250000'
2025-11-24 23:14:53 (71817): Status Report: Elapsed Time: '48000.330679'
2025-11-24 23:14:53 (71817): Status Report: CPU Time: '94325.310000'
2025-11-25 00:54:54 (71817): Status Report: Elapsed Time: '54000.330679'
2025-11-25 00:54:54 (71817): Status Report: CPU Time: '106290.560000'
2025-11-25 01:50:57 (71817): Preference change detected
2025-11-25 01:50:57 (71817): Setting CPU throttle for VM. (100%)
2025-11-25 01:50:57 (71817): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 02:12:34 (71817): Guest Log:  *** Job finished ***
2025-11-25 02:12:34 (71817): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:11:51,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:11:51,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:07,726 | INFO     | [monitor] cgroup control has ended
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:08,694 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140434253358912)>', '<ExcThread(monitor, started 140433661347584)>']
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:09,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:09,193 | INFO     | [monitor] control thread has ended
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,699 | INFO     | all workflow threads have been joined
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,699 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,699 | INFO     | traces error code: 0
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,832 [wrapper] ==== pilot stdout END ====
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,838 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,843 [wrapper] pilotpid: 5965
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,848 [wrapper] Pilot exit status: 0
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,906 [wrapper] pandaids: 6893879187
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,942 [wrapper] cleanup supervisor_pilot 21555 5966
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,947 [wrapper] Test setup, not cleaning
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,952 [wrapper] apfmon messages muted
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,958 [wrapper] ==== wrapper stdout END ====
2025-11-25 02:12:34 (71817): Guest Log: 2025-11-25 10:12:13,963 [wrapper] ==== wrapper stderr END ====
2025-11-25 02:12:34 (71817): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 02:12:34 (71817): Guest Log:     "exeErrorCode": 0,
2025-11-25 02:12:34 (71817): Guest Log:     "exeErrorDiag": "",
2025-11-25 02:12:34 (71817): Guest Log:     "pilotErrorCode": 0,
2025-11-25 02:12:34 (71817): Guest Log:     "pilotErrorDiag": "",
2025-11-25 02:12:34 (71817): Guest Log:  *** Listing of results directory ***
2025-11-25 02:12:34 (71817): Guest Log: total 915468
2025-11-25 02:12:34 (71817): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 19:04 pilot3.tar.gz
2025-11-25 02:12:34 (71817): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 19:10 queuedata.json
2025-11-25 02:12:34 (71817): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 19:10 runpilot2-wrapper.sh
2025-11-25 02:12:34 (71817): Guest Log: -rw-r-----. 1 atlas atlas     15847 Nov 24 17:55 start_atlas.sh
2025-11-25 02:12:34 (71817): Guest Log: -rw-r-----. 1 atlas atlas    590100 Nov 24 17:55 input.tar.gz
2025-11-25 02:12:34 (71817): Guest Log: -rw-r--r--. 1 atlas atlas      5697 Nov 24 17:55 init_data.xml
2025-11-25 02:12:34 (71817): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 17:57 EVNT.47493127._000817.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 02:12:34 (71817): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 24 17:58 pandaJob.out
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 24 17:59 agis_schedconf.cvmfs.json
2025-11-25 02:12:34 (71817): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 17:59 pilot3
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas 915676593 Nov 25 10:10 HITS.47523449._008165.pool.root.1
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas      1048 Nov 25 10:11 memory_monitor_summary.json
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 10:11 agis_ddmendpoints.agis.ALL.json
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas   1381621 Nov 25 10:11 log.47523449._008165.job.log.tgz.1
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas      8652 Nov 25 10:11 heartbeat.json
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 10:11 pilot_heartbeat.json
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 25 10:12 pilotlog.txt
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas   7576856 Nov 25 10:12 log.47523449._008165.job.log.1
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 10:12 output.list
2025-11-25 02:12:34 (71817): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 10:12 runtime_log
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas   8980480 Nov 25 10:12 result.tar.gz
2025-11-25 02:12:34 (71817): Guest Log: -rw-r--r--. 1 atlas atlas      8771 Nov 25 10:12 runtime_log.err
2025-11-25 02:12:34 (71817): Guest Log: -rw-------. 1 atlas atlas       670 Nov 25 10:12 NIkKDmOEPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMzGKDmqBUIAo.diag
2025-11-25 02:12:35 (71817): Guest Log: Looking for outputfile HITS.47523449._008165.pool.root.1
2025-11-25 02:12:35 (71817): Guest Log: HITS file was successfully produced
2025-11-25 02:12:35 (71817): Guest Log: -rw-------. 1 atlas atlas 915676593 Nov 25 10:10 /home/atlas/RunAtlas/HITS.47523449._008165.pool.root.1
2025-11-25 02:12:35 (71817): Guest Log: Successfully finished the ATLAS job!
2025-11-25 02:12:35 (71817): Guest Log: Copying the results back to the shared directory!
2025-11-25 02:12:35 (71817): Guest Log:  *** Contents of shared directory: ***
2025-11-25 02:12:35 (71817): Guest Log: total 412304
2025-11-25 02:12:35 (71817): Guest Log: -rw-rw----. 1 root root 412596406 Nov 24 17:54 ATLAS.root_0
2025-11-25 02:12:35 (71817): Guest Log: -rw-rw-r--. 1 root root      5697 Nov 24 17:54 init_data.xml
2025-11-25 02:12:35 (71817): Guest Log: -rw-rw----. 1 root root    590100 Nov 24 17:54 input.tar.gz
2025-11-25 02:12:35 (71817): Guest Log: -rw-r--r--. 1 root root   8980480 Nov 25  2025 result.tar.gz
2025-11-25 02:12:35 (71817): Guest Log: -rw-rw----. 1 root root     15847 Nov 24 17:54 start_atlas.sh
2025-11-25 02:12:35 (71817): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 02:12:35 (71817): VM Completion File Detected.
2025-11-25 02:12:35 (71817): Powering off VM.
2025-11-25 02:12:35 (71817): Successfully stopped VM.
2025-11-25 02:12:35 (71817): Deregistering VM. (boinc_49fa8611c7157d9e, slot#2)
2025-11-25 02:12:35 (71817): Removing network bandwidth throttle group from VM.
2025-11-25 02:12:35 (71817): Removing VM from VirtualBox.
2025-11-25 02:12:41 (71817): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN