Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:30:48 (484799): wrapper (7.7.26015): starting
12:30:48 (484799): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 12:30:48] Arguments: --nthreads 8
[2025-11-24 12:30:48] Threads: 8
[2025-11-24 12:30:48] Checking for CVMFS
[2025-11-24 12:30:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:30:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:30:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:30:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:30:49] 2.13.3.0 11502 27427 259048 153254 2 879 20996259 32935936 51403 16776704 0 252456581 99.627 241217089 37985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 12:30:49] CVMFS is ok
[2025-11-24 12:30:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:30:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:30:49] Further information can be found at the LHC@home message board.
[2025-11-24 12:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:30:49] Checking for apptainer binary...
[2025-11-24 12:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:30:49] Running /usr/bin/apptainer --version
[2025-11-24 12:30:49] apptainer version 1.4.4-1.el9
[2025-11-24 12:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:30:49] c7-2-15.aglt2.org
[2025-11-24 12:30:49] apptainer works
[2025-11-24 12:30:49] Set ATHENA_PROC_NUMBER=8
[2025-11-24 12:30:49] Set ATHENA_CORE_NUMBER=8
[2025-11-24 12:30:49] Starting ATLAS job with PandaID=6895346852
[2025-11-24 12:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:53:43]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:53:43] 2025-11-25 05:52:50,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:53:43] 2025-11-25 05:52:50,776 | INFO     | time since job start (44495s) is within the limit (172800.0s)
[2025-11-25 00:53:43] 2025-11-25 05:52:52,793 | INFO     | time since job start (44497s) is within the limit (172800.0s)
[2025-11-25 00:53:43] 2025-11-25 05:52:52,851 | INFO     | monitor loop #2586: job 0:6895346852 is in state 'finished'
[2025-11-25 00:53:43] 2025-11-25 05:52:52,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:53:43] 2025-11-25 05:52:54,800 | INFO     | time since job start (44499s) is within the limit (172800.0s)
[2025-11-25 00:53:43] 2025-11-25 05:52:55,361 | INFO     | monitor loop #2587: job 0:6895346852 is in state 'finished'
[2025-11-25 00:53:43] 2025-11-25 05:52:55,362 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:53:43] 2025-11-25 05:52:56,812 | INFO     | time since job start (44501s) is within the limit (172800.0s)
[2025-11-25 00:53:43] 2025-11-25 05:52:57,877 | INFO     | monitor loop #2588: job 0:6895346852 is in state 'finished'
[2025-11-25 00:53:43] 2025-11-25 05:52:57,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:53:43] 2025-11-25 05:52:58,825 | INFO     | time since job start (44503s) is within the limit (172800.0s)
[2025-11-25 00:53:43] 2025-11-25 05:53:00,405 | INFO     | monitor loop #2589: job 0:6895346852 is in state 'finished'
[2025-11-25 00:53:43] 2025-11-25 05:53:00,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:53:43] 2025-11-25 05:53:00,832 | INFO     | time since job start (44505s) is within the limit (172800.0s)
[2025-11-25 00:53:43] 2025-11-25 05:53:01,645 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:53:43] 2025-11-25 05:53:01,655 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3175.7378333333345
[2025-11-25 00:53:43] 2025-11-25 05:53:01,676 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895346852/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:53:43] 2025-11-25 05:53:01,676 | INFO     | extracted standard info from prmon json
[2025-11-25 00:53:43] 2025-11-25 05:53:01,676 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:53:43] 2025-11-25 05:53:01,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:53:43] 2025-11-25 05:53:01,686 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:53:43] 2025-11-25 05:53:01,687 | INFO     | sum of square deviations: 120137378492.2578
[2025-11-25 00:53:43] 2025-11-25 05:53:01,698 | INFO     | sum of deviations: 4603898463998.14
[2025-11-25 00:53:43] 2025-11-25 05:53:01,698 | INFO     | mean x: 1764027731.628258
[2025-11-25 00:53:43] 2025-11-25 05:53:01,698 | INFO     | mean y: 3154784.624142661
[2025-11-25 00:53:43] 2025-11-25 05:53:01,698 | INFO     | intersect: -67597825576.51167
[2025-11-25 00:53:43] 2025-11-25 05:53:01,699 | INFO     | chi2: 20.150505579496286
[2025-11-25 00:53:43] 2025-11-25 05:53:01,700 | INFO     | sum of square deviations: 117682569825.27057
[2025-11-25 00:53:43] 2025-11-25 05:53:01,711 | INFO     | sum of deviations: 4903404599688.606
[2025-11-25 00:53:43] 2025-11-25 05:53:01,711 | INFO     | mean x: 1764027579.1325967
[2025-11-25 00:53:43] 2025-11-25 05:53:01,711 | INFO     | mean y: 3173386.1395027624
[2025-11-25 00:53:43] 2025-11-25 05:53:01,711 | INFO     | intersect: -73497438967.4066
[2025-11-25 00:53:43] 2025-11-25 05:53:01,712 | INFO     | chi2: 16.141711094371992
[2025-11-25 00:53:43] 2025-11-25 05:53:01,712 | INFO     | current chi2=16.141711094371992 (change=19.89426254993501 %)
[2025-11-25 00:53:43] 2025-11-25 05:53:01,712 | INFO     | right removable region: 723
[2025-11-25 00:53:43] 2025-11-25 05:53:01,713 | INFO     | sum of square deviations: 117682290445.27061
[2025-11-25 00:53:43] 2025-11-25 05:53:01,734 | INFO     | sum of deviations: 4299400920335.613
[2025-11-25 00:53:43] 2025-11-25 05:53:01,735 | INFO     | mean x: 1764027884.1325967
[2025-11-25 00:53:43] 2025-11-25 05:53:01,735 | INFO     | mean y: 3173692.2748618782
[2025-11-25 00:53:43] 2025-11-25 05:53:01,735 | INFO     | intersect: -64443762884.51203
[2025-11-25 00:53:43] 2025-11-25 05:53:01,736 | INFO     | chi2: 16.543361792646824
[2025-11-25 00:53:43] 2025-11-25 05:53:01,736 | INFO     | current chi2=16.543361792646824 (change=17.90100884873 %)
[2025-11-25 00:53:43] 2025-11-25 05:53:01,736 | INFO     | left removable region: 10
[2025-11-25 00:53:43] 2025-11-25 05:53:01,745 | INFO     | sum of square deviations: 112399640725.80072
[2025-11-25 00:53:43] 2025-11-25 05:53:01,777 | INFO     | sum of deviations: 4381734383732.223
[2025-11-25 00:53:43] 2025-11-25 05:53:01,777 | INFO     | mean x: 1764027853.6423562
[2025-11-25 00:53:43] 2025-11-25 05:53:01,777 | INFO     | mean y: 3214709.628330996
[2025-11-25 00:53:43] 2025-11-25 05:53:01,778 | INFO     | intersect: -68764812040.76146
[2025-11-25 00:53:43] 2025-11-25 05:53:01,778 | INFO     | chi2: 8.567336112933564
[2025-11-25 00:53:43] 2025-11-25 05:53:01,778 | INFO     | current memory leak: 38.98 B/s (using 713 data points, chi2=8.57)
[2025-11-25 00:53:43] 2025-11-25 05:53:01,779 | INFO     | could have reported an average CPU frequency of 3268 MHz (28 samples)
[2025-11-25 00:53:43] 2025-11-25 05:53:01,779 | INFO     | ..............................
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . Timing measurements:
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . get job = 0 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . initial setup = 3 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . payload setup = 16 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . stage-in = 0 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . payload execution = 44426 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . stage-out = 5 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | . log creation = 1 s
[2025-11-25 00:53:43] 2025-11-25 05:53:01,787 | INFO     | ..............................
[2025-11-25 00:53:43] 2025-11-25 05:53:02,528 | INFO     | 
[2025-11-25 00:53:43] 2025-11-25 05:53:02,532 | INFO     | job summary report
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | --------------------------------------------------
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | PanDA job id: 6895346852
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | task id: 47556137
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | errors: (none)
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | pilot state: finished 
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | transexitcode: 0
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | exeerrorcode: 0
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | exeerrordiag: 
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | exitcode: 0
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | exitmsg: OK
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | cpuconsumptiontime: 186309 s
[2025-11-25 00:53:43] 2025-11-25 05:53:02,533 | INFO     | nevents: 1000
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | neventsw: 0
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | pid: 497656
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | pgrp: 497656
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | corecount: 8
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | event service: False
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | sizes: {0: 2284208, 1: 2284208, 11: 2284526, 44447: 2330152, 44452: 2339146, 44455: 2339202, 44483: 2339576}
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | --------------------------------------------------
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | 
[2025-11-25 00:53:43] 2025-11-25 05:53:02,534 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | job 6895346852 has completed (purged errors)
[2025-11-25 00:53:43] 2025-11-25 05:53:02,642 | INFO     | overall cleanup function is called
[2025-11-25 00:53:43] 2025-11-25 05:53:03,676 | INFO     | --- collectZombieJob: --- 10, [497656]
[2025-11-25 00:53:43] 2025-11-25 05:53:03,677 | INFO     | zombie collector waiting for pid 497656
[2025-11-25 00:53:43] 2025-11-25 05:53:03,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:53:43] 2025-11-25 05:53:03,677 | INFO     | collected zombie processes
[2025-11-25 00:53:43] 2025-11-25 05:53:03,677 | INFO     | will attempt to kill all subprocesses of pid=497656
[2025-11-25 00:53:43] 2025-11-25 05:53:03,718 | INFO     | PID=489618 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 00:53:43] 2025-11-25 05:53:03,718 | INFO     | .. there are 76 such processes running
[2025-11-25 00:53:43] 2025-11-25 05:53:05,208 | INFO     | process IDs to be killed: [497656] (in reverse order)
[2025-11-25 00:53:43] 2025-11-25 05:53:05,619 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:53:43] 2025-11-25 05:53:05,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:53:43] 2025-11-25 05:53:05,700 | INFO     | did not find any defunct processes belonging to 497656
[2025-11-25 00:53:43] 2025-11-25 05:53:05,755 | INFO     | did not find any defunct processes belonging to 497656
[2025-11-25 00:53:43] 2025-11-25 05:53:05,760 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:53:43] 2025-11-25 05:53:05,760 | INFO     | ready for new job
[2025-11-25 00:53:43] 2025-11-25 05:53:05,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:53:43] 2025-11-25 05:53:05,763 | INFO     | ***************************************
[2025-11-25 00:53:43] 2025-11-25 05:53:05,763 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:53:43] 2025-11-25 05:53:05,763 | INFO     | ***************************************
[2025-11-25 00:53:43] 2025-11-25 05:53:05,763 | INFO     | 
[2025-11-25 00:53:43] 2025-11-25 05:53:05,776 | INFO     | architecture information:
[2025-11-25 00:53:43] 2025-11-25 05:53:05,777 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:53:43] 2025-11-25 05:53:05,819 | INFO     | cat /etc/os-release:
[2025-11-25 00:53:43] NAME="CentOS Linux"
[2025-11-25 00:53:43] VERSION="7 (Core)"
[2025-11-25 00:53:43] ID="centos"
[2025-11-25 00:53:43] ID_LIKE="rhel fedora"
[2025-11-25 00:53:43] VERSION_ID="7"
[2025-11-25 00:53:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:53:43] ANSI_COLOR="0;31"
[2025-11-25 00:53:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:53:43] HOME_URL="https://www.centos.org/"
[2025-11-25 00:53:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:53:43] 
[2025-11-25 00:53:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:53:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:53:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:53:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:53:43] 
[2025-11-25 00:53:43] 2025-11-25 05:53:05,819 | INFO     | ***************************************
[2025-11-25 00:53:43] 2025-11-25 05:53:06,323 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 00:53:43] 2025-11-25 05:53:06,386 | INFO     | sufficient remaining disk space (64963477504 B)
[2025-11-25 00:53:43] 2025-11-25 05:53:06,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:53:43] 2025-11-25 05:53:06,386 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:53:43] 2025-11-25 05:53:06,386 | INFO     | update_server=False
[2025-11-25 00:53:43] 2025-11-25 05:53:06,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:53:43] 2025-11-25 05:53:06,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:53:43] 2025-11-25 05:53:06,434 | INFO     | aborting loop
[2025-11-25 00:53:43] 2025-11-25 05:53:06,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:53:43] 2025-11-25 05:53:06,992 | INFO     | all payload control threads have been joined
[2025-11-25 00:53:43] 2025-11-25 05:53:07,050 | INFO     | all data control threads have been joined
[2025-11-25 00:53:43] 2025-11-25 05:53:07,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:53:43] 2025-11-25 05:53:07,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:53:43] 2025-11-25 05:53:07,392 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,440 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,463 | INFO     | [job] validate thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,470 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,662 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,684 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,684 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,874 | INFO     | all job control threads have been joined
[2025-11-25 00:53:43] 2025-11-25 05:53:07,918 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:07,999 | INFO     | [payload] control thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:08,056 | INFO     | [data] control thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:08,069 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:08,273 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:08,692 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:08,880 | INFO     | [job] control thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:09,095 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:10,953 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:53:43] 2025-11-25 05:53:34,577 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:53:43] 2025-11-25 05:53:36,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140368078190400)>', '<ExcThread(monitor, started 140367441684224)>']
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | INFO     | PID=489618 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | INFO     | .. there are 75 such processes running
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:53:43] 2025-11-25 05:53:37,057 | INFO     | [monitor] control thread has ended
[2025-11-25 00:53:43] 2025-11-25 05:53:41,516 | INFO     | all workflow threads have been joined
[2025-11-25 00:53:43] 2025-11-25 05:53:41,517 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:53:43] 2025-11-25 05:53:41,517 | INFO     | traces error code: 0
[2025-11-25 00:53:43] 2025-11-25 05:53:41,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:53:43] 2025-11-25 05:53:41,795 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:53:43] 2025-11-25 05:53:41,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:53:43] 2025-11-25 05:53:41,850 [wrapper] pilotpid: 489618
[2025-11-25 00:53:43] 2025-11-25 05:53:41,870 [wrapper] Pilot exit status: 0
[2025-11-25 00:53:43] 2025-11-25 05:53:42,041 [wrapper] pandaids: 6895346852
[2025-11-25 00:53:43] 2025-11-25 05:53:42,346 [wrapper] cleanup supervisor_pilot 1368967 489619
[2025-11-25 00:53:43] 2025-11-25 05:53:42,352 [wrapper] Test setup, not cleaning
[2025-11-25 00:53:43] 2025-11-25 05:53:42,373 [wrapper] apfmon messages muted
[2025-11-25 00:53:43] 2025-11-25 05:53:42,391 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:53:43] 2025-11-25 05:53:42,411 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:53:43]  *** Error codes and diagnostics ***
[2025-11-25 00:53:43]     "exeErrorCode": 0,
[2025-11-25 00:53:43]     "exeErrorDiag": "",
[2025-11-25 00:53:43]     "pilotErrorCode": 0,
[2025-11-25 00:53:43]     "pilotErrorDiag": "",
[2025-11-25 00:53:43]  *** Listing of results directory ***
[2025-11-25 00:53:43] total 1315804
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 13:28 pilot3.tar.gz
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 13:29 queuedata.json
[2025-11-25 00:53:43] -rwx------. 1 boincer umatlas     36292 Nov 22 13:31 runpilot2-wrapper.sh
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas       100 Nov 24 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:53:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 12:30 run_atlas
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas       105 Nov 24 12:30 job.xml
[2025-11-25 00:53:43] -rw-r--r--. 2 boincer umatlas 410225676 Nov 24 12:30 EVNT.47483658._000462.pool.root.1
[2025-11-25 00:53:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:30 start_atlas.sh
[2025-11-25 00:53:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 12:30 shared
[2025-11-25 00:53:43] -rw-r--r--. 2 boincer umatlas    590095 Nov 24 12:30 input.tar.gz
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas         0 Nov 24 12:30 boinc_lockfile
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 12:30 pandaJob.out
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas        57 Nov 24 12:30 setup.sh.local
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas    991801 Nov 24 12:31 agis_schedconf.cvmfs.json
[2025-11-25 00:53:43] drwx------. 5 boincer umatlas      4096 Nov 24 12:31 pilot3
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas       532 Nov 25 00:39 boinc_task_state.xml
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas      6947 Nov 25 00:48 init_data.xml
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas 918347501 Nov 25 00:50 HITS.47556137._004579.pool.root.1
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas      1074 Nov 25 00:52 memory_monitor_summary.json
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas   1516227 Nov 25 00:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas   1929354 Nov 25 00:52 log.47556137._004579.job.log.tgz.1
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas      8636 Nov 25 00:53 heartbeat.json
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas        95 Nov 25 00:53 pilot_heartbeat.json
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 00:53 boinc_mmap_file
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas        29 Nov 25 00:53 wrapper_checkpoint.txt
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas      4823 Nov 25 00:53 pilotlog.txt
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas   5511487 Nov 25 00:53 log.47556137._004579.job.log.1
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas       353 Nov 25 00:53 output.list
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas       620 Nov 25 00:53 runtime_log
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas   7464960 Nov 25 00:53 result.tar.gz
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas       664 Nov 25 00:53 TFWKDmSZ7g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwKKKDmpIVM5m.diag
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 00:53 runtime_log.err
[2025-11-25 00:53:43] -rw-r--r--. 1 boincer umatlas     21825 Nov 25 00:53 stderr.txt
[2025-11-25 00:53:43] HITS file was successfully produced:
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas 918347501 Nov 25 00:50 shared/HITS.pool.root.1
[2025-11-25 00:53:43]  *** Contents of shared directory: ***
[2025-11-25 00:53:43] total 1305332
[2025-11-25 00:53:43] -rw-r--r--. 2 boincer umatlas 410225676 Nov 24 12:30 ATLAS.root_0
[2025-11-25 00:53:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:30 start_atlas.sh
[2025-11-25 00:53:43] -rw-r--r--. 2 boincer umatlas    590095 Nov 24 12:30 input.tar.gz
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas 918347501 Nov 25 00:50 HITS.pool.root.1
[2025-11-25 00:53:43] -rw-------. 1 boincer umatlas   7464960 Nov 25 00:53 result.tar.gz
00:53:44 (484799): run_atlas exited; CPU time 187476.294694
00:53:44 (484799): called boinc_finish(0)

</stderr_txt>
]]>

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