Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:10:53 (2615289): wrapper (7.7.26015): starting
07:10:53 (2615289): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 07:10:53] Arguments: --nthreads 4
[2025-11-27 07:10:53] Threads: 4
[2025-11-27 07:10:53] Checking for CVMFS
[2025-11-27 07:10:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:10:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:10:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:10:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:10:53] 2.9.2.0 849437 12281 111124 153349 2 81 31898915 36864001 0 130560 1 4898038 99.939 608984 878 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 07:10:53] CVMFS is ok
[2025-11-27 07:10:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:10:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:10:53] Further information can be found at the LHC@home message board.
[2025-11-27 07:10:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:10:53] Checking for apptainer binary...
[2025-11-27 07:10:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:10:53] Running /usr/bin/apptainer --version
[2025-11-27 07:10:53] apptainer version 1.4.1-1.1
[2025-11-27 07:10:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:10:53] iaxoA393
[2025-11-27 07:10:53] apptainer works
[2025-11-27 07:10:53] Set ATHENA_PROC_NUMBER=4
[2025-11-27 07:10:53] Set ATHENA_CORE_NUMBER=4
[2025-11-27 07:10:53] Starting ATLAS job with PandaID=6895343957
[2025-11-27 07:10:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:09:02]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:09:02] 2025-11-27 13:08:31,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:09:02] 2025-11-27 13:08:31,243 | INFO     | collected zombie processes
[2025-11-27 14:09:02] 2025-11-27 13:08:31,243 | INFO     | will attempt to kill all subprocesses of pid=2625666
[2025-11-27 14:09:02] 2025-11-27 13:08:31,287 | INFO     | process IDs to be killed: [2625666] (in reverse order)
[2025-11-27 14:09:02] 2025-11-27 13:08:31,318 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:09:02] 2025-11-27 13:08:31,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:09:02] 2025-11-27 13:08:31,320 | INFO     | did not find any defunct processes belonging to 2625666
[2025-11-27 14:09:02] 2025-11-27 13:08:31,321 | INFO     | did not find any defunct processes belonging to 2625666
[2025-11-27 14:09:02] 2025-11-27 13:08:31,322 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:09:02] 2025-11-27 13:08:31,322 | INFO     | ready for new job
[2025-11-27 14:09:02] 2025-11-27 13:08:31,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:09:02] 2025-11-27 13:08:31,323 | INFO     | ***************************************
[2025-11-27 14:09:02] 2025-11-27 13:08:31,324 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:09:02] 2025-11-27 13:08:31,324 | INFO     | ***************************************
[2025-11-27 14:09:02] 2025-11-27 13:08:31,324 | INFO     | 
[2025-11-27 14:09:02] 2025-11-27 13:08:31,324 | INFO     | architecture information:
[2025-11-27 14:09:02] 2025-11-27 13:08:31,324 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:09:02] 2025-11-27 13:08:31,337 | INFO     | cat /etc/os-release:
[2025-11-27 14:09:02] NAME="CentOS Linux"
[2025-11-27 14:09:02] VERSION="7 (Core)"
[2025-11-27 14:09:02] ID="centos"
[2025-11-27 14:09:02] ID_LIKE="rhel fedora"
[2025-11-27 14:09:02] VERSION_ID="7"
[2025-11-27 14:09:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:09:02] ANSI_COLOR="0;31"
[2025-11-27 14:09:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:09:02] HOME_URL="https://www.centos.org/"
[2025-11-27 14:09:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:09:02] 
[2025-11-27 14:09:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:09:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:09:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:09:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:09:02] 
[2025-11-27 14:09:02] 2025-11-27 13:08:31,338 | INFO     | ***************************************
[2025-11-27 14:09:02] 2025-11-27 13:08:31,841 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 14:09:02] 2025-11-27 13:08:31,856 | INFO     | sufficient remaining disk space (324745035776 B)
[2025-11-27 14:09:02] 2025-11-27 13:08:31,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:09:02] 2025-11-27 13:08:31,856 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:09:02] 2025-11-27 13:08:31,857 | INFO     | update_server=False
[2025-11-27 14:09:02] 2025-11-27 13:08:31,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:09:02] 2025-11-27 13:08:31,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:09:02] 2025-11-27 13:08:31,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:09:02] 2025-11-27 13:08:32,064 | INFO     | all data control threads have been joined
[2025-11-27 14:09:02] 2025-11-27 13:08:32,246 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:09:02] 2025-11-27 13:08:32,247 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:09:02] 2025-11-27 13:08:32,247 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:09:02] 2025-11-27 13:08:32,247 | INFO     | will abort loop
[2025-11-27 14:09:02] 2025-11-27 13:08:32,459 | INFO     | all job control threads have been joined
[2025-11-27 14:09:02] 2025-11-27 13:08:32,862 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:32,863 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:32,913 | INFO     | all payload control threads have been joined
[2025-11-27 14:09:02] 2025-11-27 13:08:32,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:09:02] 2025-11-27 13:08:33,070 | INFO     | [data] control thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,194 | INFO     | [job] validate thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,252 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,465 | INFO     | [job] control thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,558 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,590 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,761 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,836 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,837 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:33,919 | INFO     | [payload] control thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:34,165 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:09:02] 2025-11-27 13:08:34,347 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:34,938 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:35,864 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:09:02] 2025-11-27 13:08:37,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140146982623040)>', '<ExcThread(monitor, started 140146007578368)>']
[2025-11-27 14:09:02] 2025-11-27 13:08:42,290 | INFO     | all workflow threads have been joined
[2025-11-27 14:09:02] 2025-11-27 13:08:42,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:09:02] 2025-11-27 13:08:42,291 | INFO     | traces error code: 0
[2025-11-27 14:09:02] 2025-11-27 13:08:42,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:09:02] 2025-11-27 13:09:02,349 | INFO     | PID=2619080 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:09:02] 2025-11-27 13:09:02,349 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:09:02] 2025-11-27 13:09:02,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:09:02] 2025-11-27 13:09:02,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:09:02] 2025-11-27 13:09:02,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:09:02] 2025-11-27 13:09:02,349 | INFO     | [monitor] control thread has ended
[2025-11-27 14:09:02] 2025-11-27 13:09:02,414 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:09:02] 2025-11-27 13:09:02,417 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:09:02] 2025-11-27 13:09:02,421 [wrapper] pilotpid: 2619080
[2025-11-27 14:09:02] 2025-11-27 13:09:02,424 [wrapper] Pilot exit status: 0
[2025-11-27 14:09:02] 2025-11-27 13:09:02,435 [wrapper] pandaids: 6895343957
[2025-11-27 14:09:02] 2025-11-27 13:09:02,455 [wrapper] cleanup supervisor_pilot 2670261 2619081
[2025-11-27 14:09:02] 2025-11-27 13:09:02,459 [wrapper] Test setup, not cleaning
[2025-11-27 14:09:02] 2025-11-27 13:09:02,462 [wrapper] apfmon messages muted
[2025-11-27 14:09:02] 2025-11-27 13:09:02,465 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:09:02] 2025-11-27 13:09:02,469 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:09:02]  *** Error codes and diagnostics ***
[2025-11-27 14:09:02]     "exeErrorCode": 0,
[2025-11-27 14:09:02]     "exeErrorDiag": "",
[2025-11-27 14:09:02]     "pilotErrorCode": 0,
[2025-11-27 14:09:02]     "pilotErrorDiag": "",
[2025-11-27 14:09:02]  *** Listing of results directory ***
[2025-11-27 14:09:02] total 1315180
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc    576529 Nov 22 16:48 pilot3.tar.gz
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc      5112 Nov 22 17:12 queuedata.json
[2025-11-27 14:09:02] -rwx------ 1 boinc boinc     36292 Nov 22 17:13 runpilot2-wrapper.sh
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:09:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:10 run_atlas
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:10 job.xml
[2025-11-27 14:09:02] -rw-r--r-- 2 boinc boinc 409749228 Nov 27 07:10 EVNT.47483658._000426.pool.root.1
[2025-11-27 14:09:02] -rw-r--r-- 2 boinc boinc    590103 Nov 27 07:10 input.tar.gz
[2025-11-27 14:09:02] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:10 start_atlas.sh
[2025-11-27 14:09:02] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:10 shared
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:10 boinc_setup_complete
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc      6373 Nov 27 07:10 init_data.xml
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:10 boinc_lockfile
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc      2781 Nov 27 07:10 pandaJob.out
[2025-11-27 14:09:02] -rw------- 1 boinc boinc    991578 Nov 27 07:11 agis_schedconf.cvmfs.json
[2025-11-27 14:09:02] drwx------ 5 boinc boinc      4096 Nov 27 07:11 pilot3
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc       531 Nov 27 14:03 boinc_task_state.xml
[2025-11-27 14:09:02] -rw------- 1 boinc boinc 923518742 Nov 27 14:08 HITS.47556137._004211.pool.root.1
[2025-11-27 14:09:02] -rw------- 1 boinc boinc        95 Nov 27 14:08 pilot_heartbeat.json
[2025-11-27 14:09:02] -rw------- 1 boinc boinc      1031 Nov 27 14:08 memory_monitor_summary.json
[2025-11-27 14:09:02] -rw------- 1 boinc boinc   1516240 Nov 27 14:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:09:02] -rw------- 1 boinc boinc   1256122 Nov 27 14:08 log.47556137._004211.job.log.tgz.1
[2025-11-27 14:09:02] -rw------- 1 boinc boinc      8571 Nov 27 14:08 heartbeat.json
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc        28 Nov 27 14:08 wrapper_checkpoint.txt
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc      8192 Nov 27 14:08 boinc_mmap_file
[2025-11-27 14:09:02] -rw------- 1 boinc boinc       747 Nov 27 14:09 pilotlog.txt
[2025-11-27 14:09:02] -rw------- 1 boinc boinc   3530942 Nov 27 14:09 log.47556137._004211.job.log.1
[2025-11-27 14:09:02] -rw------- 1 boinc boinc       353 Nov 27 14:09 output.list
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc       620 Nov 27 14:09 runtime_log
[2025-11-27 14:09:02] -rw------- 1 boinc boinc   4802560 Nov 27 14:09 result.tar.gz
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc      8908 Nov 27 14:09 runtime_log.err
[2025-11-27 14:09:02] -rw------- 1 boinc boinc       667 Nov 27 14:09 E5oKDmiP5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8FKKDmbKX0Yn.diag
[2025-11-27 14:09:02] -rw-r--r-- 1 boinc boinc     10870 Nov 27 14:09 stderr.txt
[2025-11-27 14:09:02] HITS file was successfully produced:
[2025-11-27 14:09:02] -rw------- 1 boinc boinc 923518742 Nov 27 14:08 shared/HITS.pool.root.1
[2025-11-27 14:09:02]  *** Contents of shared directory: ***
[2025-11-27 14:09:02] total 1307320
[2025-11-27 14:09:02] -rw-r--r-- 2 boinc boinc 409749228 Nov 27 07:10 ATLAS.root_0
[2025-11-27 14:09:02] -rw-r--r-- 2 boinc boinc    590103 Nov 27 07:10 input.tar.gz
[2025-11-27 14:09:02] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:10 start_atlas.sh
[2025-11-27 14:09:02] -rw------- 1 boinc boinc 923518742 Nov 27 14:08 HITS.pool.root.1
[2025-11-27 14:09:02] -rw------- 1 boinc boinc   4802560 Nov 27 14:09 result.tar.gz
14:09:04 (2615289): run_atlas exited; CPU time 98008.802838
14:09:04 (2615289): called boinc_finish(0)

</stderr_txt>
]]>

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