Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:33:46 (9978): wrapper (7.7.26015): starting
05:33:46 (9978): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:33:46] Arguments: --nthreads 8
[2025-11-27 05:33:46] Threads: 8
[2025-11-27 05:33:46] Checking for CVMFS
[2025-11-27 05:33:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:33:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:33:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:33:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:33:49] 2.11.2.0 19969 83684 85180 153347 1 84 13204299 25165824 1288 130560 10 27100684 99.904 12311847 1742 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 05:33:49] CVMFS is ok
[2025-11-27 05:33:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:33:49] Checking for apptainer binary...
[2025-11-27 05:33:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:33:49] Running /usr/bin/apptainer --version
[2025-11-27 05:33:49] apptainer version 1.3.2-1.el7
[2025-11-27 05:33:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:33:55] cg-vwn469.simple-grid.lan
[2025-11-27 05:33:55] apptainer works
[2025-11-27 05:33:56] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:33:56] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:33:56] Starting ATLAS job with PandaID=6894258943
[2025-11-27 05:33:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:46:10]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:46:10] 2025-11-28 01:45:26,329 | INFO     | time since job start (76070s) is within the limit (172800.0s)
[2025-11-28 02:46:10] 2025-11-28 01:45:28,327 | INFO     | monitor loop #5160: job 0:6894258943 is in state 'finished'
[2025-11-28 02:46:10] 2025-11-28 01:45:28,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:46:10] 2025-11-28 01:45:28,343 | INFO     | time since job start (76072s) is within the limit (172800.0s)
[2025-11-28 02:46:10] 2025-11-28 01:45:30,355 | INFO     | time since job start (76074s) is within the limit (172800.0s)
[2025-11-28 02:46:10] 2025-11-28 01:45:30,832 | INFO     | monitor loop #5161: job 0:6894258943 is in state 'finished'
[2025-11-28 02:46:10] 2025-11-28 01:45:30,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,600 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 02:46:10] 2025-11-28 01:45:31,601 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-28 02:46:10] 2025-11-28 01:45:31,602 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6894258943/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,603 | INFO     | extracted standard info from prmon json
[2025-11-28 02:46:10] 2025-11-28 01:45:31,603 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:46:10] 2025-11-28 01:45:31,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:46:10] 2025-11-28 01:45:31,631 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:46:10] 2025-11-28 01:45:31,633 | INFO     | sum of square deviations: 586930722990.4904
[2025-11-28 02:46:10] 2025-11-28 01:45:31,694 | INFO     | sum of deviations: 3091958975038.2407
[2025-11-28 02:46:10] 2025-11-28 01:45:31,695 | INFO     | mean x: 1764256477.0202103
[2025-11-28 02:46:10] 2025-11-28 01:45:31,695 | INFO     | mean y: 2851737.6701697656
[2025-11-28 02:46:10] 2025-11-28 01:45:31,695 | INFO     | intersect: -9291275209.029758
[2025-11-28 02:46:10] 2025-11-28 01:45:31,696 | INFO     | chi2: 19.30621274866036
[2025-11-28 02:46:10] 2025-11-28 01:45:31,698 | INFO     | sum of square deviations: 579842640105.2697
[2025-11-28 02:46:10] 2025-11-28 01:45:31,755 | INFO     | sum of deviations: 3522807208424.1523
[2025-11-28 02:46:10] 2025-11-28 01:45:31,756 | INFO     | mean x: 1764256324.5243506
[2025-11-28 02:46:10] 2025-11-28 01:45:31,756 | INFO     | mean y: 2861007.1948051946
[2025-11-28 02:46:10] 2025-11-28 01:45:31,756 | INFO     | intersect: -10715796896.9806
[2025-11-28 02:46:10] 2025-11-28 01:45:31,757 | INFO     | chi2: 15.858337153329936
[2025-11-28 02:46:10] 2025-11-28 01:45:31,757 | INFO     | current chi2=15.858337153329936 (change=17.858891540339364 %)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,757 | INFO     | right removable region: 1231
[2025-11-28 02:46:10] 2025-11-28 01:45:31,759 | INFO     | sum of square deviations: 579841870285.2695
[2025-11-28 02:46:10] 2025-11-28 01:45:31,802 | INFO     | sum of deviations: 2556199910982.6855
[2025-11-28 02:46:10] 2025-11-28 01:45:31,802 | INFO     | mean x: 1764256629.5243506
[2025-11-28 02:46:10] 2025-11-28 01:45:31,802 | INFO     | mean y: 2863263.5438311687
[2025-11-28 02:46:10] 2025-11-28 01:45:31,803 | INFO     | intersect: -7774761758.812762
[2025-11-28 02:46:10] 2025-11-28 01:45:31,804 | INFO     | chi2: 14.26797758742784
[2025-11-28 02:46:10] 2025-11-28 01:45:31,804 | INFO     | current chi2=14.26797758742784 (change=26.09644484303178 %)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,806 | INFO     | sum of square deviations: 572810320980.0016
[2025-11-28 02:46:10] 2025-11-28 01:45:31,876 | INFO     | sum of deviations: 2115315805549.5283
[2025-11-28 02:46:10] 2025-11-28 01:45:31,885 | INFO     | mean x: 1764256782.0285249
[2025-11-28 02:46:10] 2025-11-28 01:45:31,885 | INFO     | mean y: 2872824.727791361
[2025-11-28 02:46:10] 2025-11-28 01:45:31,885 | INFO     | intersect: -6512303524.902229
[2025-11-28 02:46:10] 2025-11-28 01:45:31,887 | INFO     | chi2: 10.994943836470819
[2025-11-28 02:46:10] 2025-11-28 01:45:31,887 | INFO     | current chi2=10.994943836470819 (change=22.93971749605942 %)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,887 | INFO     | left removable region: 20
[2025-11-28 02:46:10] 2025-11-28 01:45:31,889 | INFO     | sum of square deviations: 550693102739.3274
[2025-11-28 02:46:10] 2025-11-28 01:45:31,931 | INFO     | sum of deviations: 2245432607192.047
[2025-11-28 02:46:10] 2025-11-28 01:45:31,931 | INFO     | mean x: 1764256904.0371594
[2025-11-28 02:46:10] 2025-11-28 01:45:31,931 | INFO     | mean y: 2893384.199009083
[2025-11-28 02:46:10] 2025-11-28 01:45:31,932 | INFO     | intersect: -7190804811.9157295
[2025-11-28 02:46:10] 2025-11-28 01:45:31,933 | INFO     | chi2: 4.598180956558746
[2025-11-28 02:46:10] 2025-11-28 01:45:31,933 | INFO     | current memory leak: 4.08 B/s (using 1211 data points, chi2=4.60)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,934 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | ..............................
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . Timing measurements:
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . get job = 0 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . initial setup = 15 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . payload setup = 165 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . stage-in = 0 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . payload execution = 75605 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,935 | INFO     | . stage-out = 4 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,936 | INFO     | . log creation = 1 s
[2025-11-28 02:46:10] 2025-11-28 01:45:31,936 | INFO     | ..............................
[2025-11-28 02:46:10] 2025-11-28 01:45:32,045 | INFO     | 
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | job summary report
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | --------------------------------------------------
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | PanDA job id: 6894258943
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | task id: 47533967
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | errors: (none)
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:46:10] 2025-11-28 01:45:32,046 | INFO     | pilot state: finished 
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | transexitcode: 0
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | exeerrorcode: 0
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | exeerrordiag: 
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | exitcode: 0
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | exitmsg: OK
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | cpuconsumptiontime: 286041 s
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | nevents: 1000
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | neventsw: 0
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | pid: 20436
[2025-11-28 02:46:10] 2025-11-28 01:45:32,047 | INFO     | pgrp: 20436
[2025-11-28 02:46:10] 2025-11-28 01:45:32,048 | INFO     | corecount: 8
[2025-11-28 02:46:10] 2025-11-28 01:45:32,048 | INFO     | event service: False
[2025-11-28 02:46:10] 2025-11-28 01:45:32,048 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284343, 23: 2284371, 33: 2284399, 44: 2284455, 55: 2284611, 66: 2284639, 76: 2284667, 87: 2284723, 98: 2284751, 106: 2285321, 
[2025-11-28 02:46:10] 2025-11-28 01:45:32,048 | INFO     | --------------------------------------------------
[2025-11-28 02:46:10] 2025-11-28 01:45:32,048 | INFO     | 
[2025-11-28 02:46:10] 2025-11-28 01:45:32,048 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 02:46:10] 2025-11-28 01:45:32,367 | INFO     | time since job start (76076s) is within the limit (172800.0s)
[2025-11-28 02:46:10] 2025-11-28 01:45:32,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:46:10] 2025-11-28 01:45:32,522 | INFO     | job 6894258943 has completed (purged errors)
[2025-11-28 02:46:10] 2025-11-28 01:45:32,522 | INFO     | overall cleanup function is called
[2025-11-28 02:46:10] 2025-11-28 01:45:33,545 | INFO     | --- collectZombieJob: --- 10, [20436]
[2025-11-28 02:46:10] 2025-11-28 01:45:33,545 | INFO     | zombie collector waiting for pid 20436
[2025-11-28 02:46:10] 2025-11-28 01:45:33,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:46:10] 2025-11-28 01:45:33,545 | INFO     | collected zombie processes
[2025-11-28 02:46:10] 2025-11-28 01:45:33,545 | INFO     | will attempt to kill all subprocesses of pid=20436
[2025-11-28 02:46:10] 2025-11-28 01:45:33,651 | INFO     | process IDs to be killed: [20436] (in reverse order)
[2025-11-28 02:46:10] 2025-11-28 01:45:33,745 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:46:10] 2025-11-28 01:45:33,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:46:10] 2025-11-28 01:45:33,749 | INFO     | did not find any defunct processes belonging to 20436
[2025-11-28 02:46:10] 2025-11-28 01:45:33,752 | INFO     | did not find any defunct processes belonging to 20436
[2025-11-28 02:46:10] 2025-11-28 01:45:33,754 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:46:10] 2025-11-28 01:45:33,754 | INFO     | ready for new job
[2025-11-28 02:46:10] 2025-11-28 01:45:33,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:46:10] 2025-11-28 01:45:33,759 | INFO     | ***************************************
[2025-11-28 02:46:10] 2025-11-28 01:45:33,759 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:46:10] 2025-11-28 01:45:33,759 | INFO     | ***************************************
[2025-11-28 02:46:10] 2025-11-28 01:45:33,759 | INFO     | 
[2025-11-28 02:46:10] 2025-11-28 01:45:33,760 | INFO     | pilot is running in a VM
[2025-11-28 02:46:10] 2025-11-28 01:45:33,760 | INFO     | architecture information:
[2025-11-28 02:46:10] 2025-11-28 01:45:33,760 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:46:10] 2025-11-28 01:45:33,816 | INFO     | cat /etc/os-release:
[2025-11-28 02:46:10] NAME="CentOS Linux"
[2025-11-28 02:46:10] VERSION="7 (Core)"
[2025-11-28 02:46:10] ID="centos"
[2025-11-28 02:46:10] ID_LIKE="rhel fedora"
[2025-11-28 02:46:10] VERSION_ID="7"
[2025-11-28 02:46:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:46:10] ANSI_COLOR="0;31"
[2025-11-28 02:46:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:46:10] HOME_URL="https://www.centos.org/"
[2025-11-28 02:46:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:46:10] 
[2025-11-28 02:46:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:46:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:46:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:46:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:46:10] 
[2025-11-28 02:46:10] 2025-11-28 01:45:33,817 | INFO     | ***************************************
[2025-11-28 02:46:10] 2025-11-28 01:45:34,320 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 02:46:10] 2025-11-28 01:45:34,533 | INFO     | sufficient remaining disk space (495200501760 B)
[2025-11-28 02:46:10] 2025-11-28 01:45:34,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:46:10] 2025-11-28 01:45:34,534 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:46:10] 2025-11-28 01:45:34,534 | INFO     | update_server=False
[2025-11-28 02:46:10] 2025-11-28 01:45:34,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:46:10] 2025-11-28 01:45:34,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:46:10] 2025-11-28 01:45:34,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:46:10] 2025-11-28 01:45:34,536 | INFO     | aborting loop
[2025-11-28 02:46:10] 2025-11-28 01:45:34,873 | INFO     | all job control threads have been joined
[2025-11-28 02:46:10] 2025-11-28 01:45:34,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:46:10] 2025-11-28 01:45:35,185 | INFO     | all payload control threads have been joined
[2025-11-28 02:46:10] 2025-11-28 01:45:35,287 | INFO     | all data control threads have been joined
[2025-11-28 02:46:10] 2025-11-28 01:45:35,540 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:35,542 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:35,605 | INFO     | [job] validate thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:35,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:35,879 | INFO     | [job] control thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,040 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,191 | INFO     | [payload] control thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,293 | INFO     | [data] control thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,404 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,442 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,542 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:36,664 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:37,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:46:10] 2025-11-28 01:45:37,111 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:37,138 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:38,066 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:39,000 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:46:10] 2025-11-28 01:45:48,767 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:46:10] 2025-11-28 01:45:50,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911646742336)>', '<ExcThread(monitor, started 139911327880960)>']
[2025-11-28 02:46:10] 2025-11-28 01:45:55,213 | INFO     | all workflow threads have been joined
[2025-11-28 02:46:10] 2025-11-28 01:45:55,213 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:46:10] 2025-11-28 01:45:55,213 | INFO     | traces error code: 0
[2025-11-28 02:46:10] 2025-11-28 01:45:55,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:46:10] 2025-11-28 01:46:05,606 | INFO     | PID=13789 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:46:10] 2025-11-28 01:46:05,606 | INFO     | .. there are 9 such processes running
[2025-11-28 02:46:10] 2025-11-28 01:46:05,607 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:46:10] 2025-11-28 01:46:05,608 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:46:10] 2025-11-28 01:46:05,608 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:46:10] 2025-11-28 01:46:05,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:46:10] 2025-11-28 01:46:05,608 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 02:46:10] 2025-11-28 01:46:05,608 | INFO     | [monitor] control thread has ended
[2025-11-28 02:46:10] 2025-11-28 01:46:05,868 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:46:10] 2025-11-28 01:46:05,906 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:46:10] 2025-11-28 01:46:05,960 [wrapper] pilotpid: 13789
[2025-11-28 02:46:10] 2025-11-28 01:46:06,067 [wrapper] Pilot exit status: 0
[2025-11-28 02:46:10] 2025-11-28 01:46:06,490 [wrapper] pandaids: 6894258943
[2025-11-28 02:46:10] 2025-11-28 01:46:07,495 [wrapper] cleanup supervisor_pilot 11365 13790
[2025-11-28 02:46:10] 2025-11-28 01:46:07,611 [wrapper] Test setup, not cleaning
[2025-11-28 02:46:10] 2025-11-28 01:46:07,749 [wrapper] apfmon messages muted
[2025-11-28 02:46:10] 2025-11-28 01:46:07,867 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:46:10] 2025-11-28 01:46:07,929 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:46:10]  *** Error codes and diagnostics ***
[2025-11-28 02:46:10]     "exeErrorCode": 0,
[2025-11-28 02:46:10]     "exeErrorDiag": "",
[2025-11-28 02:46:10]     "pilotErrorCode": 0,
[2025-11-28 02:46:10]     "pilotErrorDiag": "",
[2025-11-28 02:46:10]  *** Listing of results directory ***
[2025-11-28 02:46:10] total 1343100
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc      5112 Nov 21 05:11 queuedata.json
[2025-11-28 02:46:10] -rwx------. 1 boinc boinc     36292 Nov 21 05:12 runpilot2-wrapper.sh
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc       100 Nov 27 05:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:46:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 05:33 run_atlas
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc       105 Nov 27 05:33 job.xml
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc      6393 Nov 27 05:33 init_data.xml
[2025-11-28 02:46:10] -rw-r--r--. 2 boinc boinc 408541560 Nov 27 05:33 EVNT.47493127._002180.pool.root.1
[2025-11-28 02:46:10] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:33 start_atlas.sh
[2025-11-28 02:46:10] drwxrwx--x. 2 boinc boinc        68 Nov 27 05:33 shared
[2025-11-28 02:46:10] -rw-r--r--. 2 boinc boinc    590096 Nov 27 05:33 input.tar.gz
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc         0 Nov 27 05:33 boinc_lockfile
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc      2786 Nov 27 05:33 pandaJob.out
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc    991570 Nov 27 05:37 agis_schedconf.cvmfs.json
[2025-11-28 02:46:10] drwx------. 5 boinc boinc      4096 Nov 27 05:37 pilot3
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc       533 Nov 28 02:28 boinc_task_state.xml
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc 937883046 Nov 28 02:42 HITS.47533967._001512.pool.root.1
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc      1030 Nov 28 02:43 memory_monitor_summary.json
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc   1516240 Nov 28 02:43 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc   2356889 Nov 28 02:43 log.47533967._001512.job.log.tgz.1
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc      7950 Nov 28 02:45 heartbeat.json
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc      8192 Nov 28 02:45 boinc_mmap_file
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc        29 Nov 28 02:45 wrapper_checkpoint.txt
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc        95 Nov 28 02:46 pilot_heartbeat.json
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc       890 Nov 28 02:46 pilotlog.txt
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc  10149604 Nov 28 02:46 log.47533967._001512.job.log.1
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc       353 Nov 28 02:46 output.list
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc       620 Nov 28 02:46 runtime_log
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc  12523520 Nov 28 02:46 result.tar.gz
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc      8817 Nov 28 02:46 runtime_log.err
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc       662 Nov 28 02:46 j6RMDmNgXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5zIKDmJz56kn.diag
[2025-11-28 02:46:10] -rw-r--r--. 1 boinc boinc     21178 Nov 28 02:46 stderr.txt
[2025-11-28 02:46:10] HITS file was successfully produced:
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc 937883046 Nov 28 02:42 shared/HITS.pool.root.1
[2025-11-28 02:46:10]  *** Contents of shared directory: ***
[2025-11-28 02:46:10] total 1327700
[2025-11-28 02:46:10] -rw-r--r--. 2 boinc boinc 408541560 Nov 27 05:33 ATLAS.root_0
[2025-11-28 02:46:10] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:33 start_atlas.sh
[2025-11-28 02:46:10] -rw-r--r--. 2 boinc boinc    590096 Nov 27 05:33 input.tar.gz
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc 937883046 Nov 28 02:42 HITS.pool.root.1
[2025-11-28 02:46:10] -rw-------. 1 boinc boinc  12523520 Nov 28 02:46 result.tar.gz
02:46:12 (9978): run_atlas exited; CPU time 286477.262499
02:46:12 (9978): called boinc_finish(0)

</stderr_txt>
]]>

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