Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:53:32 (1170872): wrapper (7.7.26015): starting
07:53:32 (1170872): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 07:53:32] Arguments: --nthreads 12
[2025-11-25 07:53:32] Threads: 12
[2025-11-25 07:53:32] Checking for CVMFS
[2025-11-25 07:53:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:53:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:53:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:53:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:53:33] 2.13.3.0 51945 25349 496228 153273 0 81 45345740 46080001 6352 130560 0 183502779 99.925 43919684 23891 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-25 07:53:33] CVMFS is ok
[2025-11-25 07:53:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:53:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:53:33] Further information can be found at the LHC@home message board.
[2025-11-25 07:53:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:53:33] Checking for apptainer binary...
[2025-11-25 07:53:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:53:33] Running /usr/bin/apptainer --version
[2025-11-25 07:53:33] apptainer version 1.4.3-1.el9
[2025-11-25 07:53:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:53:33] mff2101.farm.particle.cz
[2025-11-25 07:53:33] apptainer works
[2025-11-25 07:53:33] Set ATHENA_PROC_NUMBER=12
[2025-11-25 07:53:33] Set ATHENA_CORE_NUMBER=12
[2025-11-25 07:53:33] Starting ATLAS job with PandaID=6892537401
[2025-11-25 07:53:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:25:23]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:25:23] 2025-11-25 12:24:38,405 | INFO     | time since job start (19853s) is within the limit (172800.0s)
[2025-11-25 13:25:23] 2025-11-25 12:24:39,869 | INFO     | PID=1175055 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 13:25:23] 2025-11-25 12:24:39,869 | INFO     | .. there are 8 such processes running
[2025-11-25 13:25:23] 2025-11-25 12:24:40,283 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 13:25:23] 2025-11-25 12:24:40,299 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2728.70840625
[2025-11-25 13:25:23] 2025-11-25 12:24:40,317 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6892537401/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,318 | INFO     | extracted standard info from prmon json
[2025-11-25 13:25:23] 2025-11-25 12:24:40,318 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:25:23] 2025-11-25 12:24:40,318 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:25:23] 2025-11-25 12:24:40,324 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:25:23] 2025-11-25 12:24:40,324 | INFO     | sum of square deviations: 10644461340.972292
[2025-11-25 13:25:23] 2025-11-25 12:24:40,327 | INFO     | sum of deviations: 242271630568.24
[2025-11-25 13:25:23] 2025-11-25 12:24:40,327 | INFO     | mean x: 1764063537.9907691
[2025-11-25 13:25:23] 2025-11-25 12:24:40,327 | INFO     | mean y: 3439306.08
[2025-11-25 13:25:23] 2025-11-25 12:24:40,327 | INFO     | intersect: -40147258421.56695
[2025-11-25 13:25:23] 2025-11-25 12:24:40,328 | INFO     | chi2: 4.869373399343077
[2025-11-25 13:25:23] 2025-11-25 12:24:40,328 | INFO     | sum of square deviations: 10160792335.987406
[2025-11-25 13:25:23] 2025-11-25 12:24:40,331 | INFO     | sum of deviations: 354732795361.8565
[2025-11-25 13:25:23] 2025-11-25 12:24:40,331 | INFO     | mean x: 1764063385.50625
[2025-11-25 13:25:23] 2025-11-25 12:24:40,331 | INFO     | mean y: 3474694.821875
[2025-11-25 13:25:23] 2025-11-25 12:24:40,331 | INFO     | intersect: -61583369642.0889
[2025-11-25 13:25:23] 2025-11-25 12:24:40,332 | INFO     | chi2: 2.3140889798932958
[2025-11-25 13:25:23] 2025-11-25 12:24:40,332 | INFO     | current chi2=2.3140889798932958 (change=52.47665787541601 %)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,333 | INFO     | sum of square deviations: 9691929498.971403
[2025-11-25 13:25:23] 2025-11-25 12:24:40,335 | INFO     | sum of deviations: 359335922223.6574
[2025-11-25 13:25:23] 2025-11-25 12:24:40,335 | INFO     | mean x: 1764063233.0095239
[2025-11-25 13:25:23] 2025-11-25 12:24:40,336 | INFO     | mean y: 3476143.1142857145
[2025-11-25 13:25:23] 2025-11-25 12:24:40,336 | INFO     | intersect: -65400558085.73543
[2025-11-25 13:25:23] 2025-11-25 12:24:40,336 | INFO     | chi2: 2.2027217949010134
[2025-11-25 13:25:23] 2025-11-25 12:24:40,336 | INFO     | current chi2=2.2027217949010134 (change=4.812571424864466 %)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,336 | INFO     | right removable region: 314
[2025-11-25 13:25:23] 2025-11-25 12:24:40,337 | INFO     | sum of square deviations: 10160635202.0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,339 | INFO     | sum of deviations: 142865406637.0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,340 | INFO     | mean x: 1764063690.5
[2025-11-25 13:25:23] 2025-11-25 12:24:40,340 | INFO     | mean y: 3470500.8
[2025-11-25 13:25:23] 2025-11-25 12:24:40,340 | INFO     | intersect: -24800458728.66801
[2025-11-25 13:25:23] 2025-11-25 12:24:40,340 | INFO     | chi2: 2.8034354635930514
[2025-11-25 13:25:23] 2025-11-25 12:24:40,340 | INFO     | current chi2=2.8034354635930514 (change=42.427182438478425 %)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,341 | INFO     | sum of square deviations: 9691751992.0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | sum of deviations: 118087642116.00008
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | mean x: 1764063843.0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | mean y: 3478546.834920635
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | intersect: -21490482496.938328
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | chi2: 2.751480001386497
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | current chi2=2.751480001386497 (change=1.8532783394259091 %)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,344 | INFO     | left removable region: 20
[2025-11-25 13:25:23] 2025-11-25 12:24:40,345 | INFO     | sum of square deviations: 7879840773.377496
[2025-11-25 13:25:23] 2025-11-25 12:24:40,347 | INFO     | sum of deviations: 199524697241.59167
[2025-11-25 13:25:23] 2025-11-25 12:24:40,347 | INFO     | mean x: 1764063812.5204082
[2025-11-25 13:25:23] 2025-11-25 12:24:40,347 | INFO     | mean y: 3529794.7346938774
[2025-11-25 13:25:23] 2025-11-25 12:24:40,348 | INFO     | intersect: -44664161879.58799
[2025-11-25 13:25:23] 2025-11-25 12:24:40,348 | INFO     | chi2: 0.03632803340000825
[2025-11-25 13:25:23] 2025-11-25 12:24:40,348 | INFO     | current memory leak: 25.32 B/s (using 294 data points, chi2=0.04)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,349 | INFO     | could have reported an average CPU frequency of 2727 MHz (14 samples)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,349 | INFO     | ..............................
[2025-11-25 13:25:23] 2025-11-25 12:24:40,349 | INFO     | . Timing measurements:
[2025-11-25 13:25:23] 2025-11-25 12:24:40,349 | INFO     | . get job = 0 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,349 | INFO     | . initial setup = 1 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,349 | INFO     | . payload setup = 7 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,350 | INFO     | . stage-in = 0 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,350 | INFO     | . payload execution = 19818 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,350 | INFO     | . stage-out = 2 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,350 | INFO     | . log creation = 0 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,350 | INFO     | ..............................
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | 
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | job summary report
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | --------------------------------------------------
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | PanDA job id: 6892537401
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | task id: 47493029
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | errors: (none)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,445 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | pilot state: finished 
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | transexitcode: 0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | exeerrorcode: 0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | exeerrordiag: 
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | exitcode: 0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | exitmsg: OK
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | cpuconsumptiontime: 227321 s
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | nevents: 1000
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | neventsw: 0
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | pid: 1182599
[2025-11-25 13:25:23] 2025-11-25 12:24:40,446 | INFO     | pgrp: 1182599
[2025-11-25 13:25:23] 2025-11-25 12:24:40,447 | INFO     | corecount: 12
[2025-11-25 13:25:23] 2025-11-25 12:24:40,447 | INFO     | event service: False
[2025-11-25 13:25:23] 2025-11-25 12:24:40,447 | INFO     | sizes: {0: 2284300, 5: 2284562, 11: 2284618, 19829: 2319092, 19832: 2328093, 19833: 2328149, 19839: 2328523}
[2025-11-25 13:25:23] 2025-11-25 12:24:40,447 | INFO     | --------------------------------------------------
[2025-11-25 13:25:23] 2025-11-25 12:24:40,447 | INFO     | 
[2025-11-25 13:25:23] 2025-11-25 12:24:40,447 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-11-25 13:25:23] 2025-11-25 12:24:40,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,474 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | job 6892537401 has completed (purged errors)
[2025-11-25 13:25:23] 2025-11-25 12:24:40,476 | INFO     | overall cleanup function is called
[2025-11-25 13:25:23] 2025-11-25 12:24:41,500 | INFO     | --- collectZombieJob: --- 10, [1182599]
[2025-11-25 13:25:23] 2025-11-25 12:24:41,501 | INFO     | zombie collector waiting for pid 1182599
[2025-11-25 13:25:23] 2025-11-25 12:24:41,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:25:23] 2025-11-25 12:24:41,501 | INFO     | collected zombie processes
[2025-11-25 13:25:23] 2025-11-25 12:24:41,501 | INFO     | will attempt to kill all subprocesses of pid=1182599
[2025-11-25 13:25:23] 2025-11-25 12:24:41,881 | INFO     | process IDs to be killed: [1182599] (in reverse order)
[2025-11-25 13:25:23] 2025-11-25 12:24:42,005 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:25:23] 2025-11-25 12:24:42,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:25:23] 2025-11-25 12:24:42,018 | INFO     | did not find any defunct processes belonging to 1182599
[2025-11-25 13:25:23] 2025-11-25 12:24:42,029 | INFO     | did not find any defunct processes belonging to 1182599
[2025-11-25 13:25:23] 2025-11-25 12:24:42,030 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:25:23] 2025-11-25 12:24:42,030 | INFO     | ready for new job
[2025-11-25 13:25:23] 2025-11-25 12:24:42,031 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:25:23] 2025-11-25 12:24:42,034 | INFO     | ***************************************
[2025-11-25 13:25:23] 2025-11-25 12:24:42,034 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:25:23] 2025-11-25 12:24:42,034 | INFO     | ***************************************
[2025-11-25 13:25:23] 2025-11-25 12:24:42,034 | INFO     | 
[2025-11-25 13:25:23] 2025-11-25 12:24:42,041 | INFO     | architecture information:
[2025-11-25 13:25:23] 2025-11-25 12:24:42,042 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:25:23] 2025-11-25 12:24:42,066 | INFO     | cat /etc/os-release:
[2025-11-25 13:25:23] NAME="CentOS Linux"
[2025-11-25 13:25:23] VERSION="7 (Core)"
[2025-11-25 13:25:23] ID="centos"
[2025-11-25 13:25:23] ID_LIKE="rhel fedora"
[2025-11-25 13:25:23] VERSION_ID="7"
[2025-11-25 13:25:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:25:23] ANSI_COLOR="0;31"
[2025-11-25 13:25:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:25:23] HOME_URL="https://www.centos.org/"
[2025-11-25 13:25:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:25:23] 
[2025-11-25 13:25:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:25:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:25:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:25:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:25:23] 
[2025-11-25 13:25:23] 2025-11-25 12:24:42,066 | INFO     | ***************************************
[2025-11-25 13:25:23] 2025-11-25 12:24:42,568 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-11-25 13:25:23] 2025-11-25 12:24:42,593 | INFO     | sufficient remaining disk space (1669652807680 B)
[2025-11-25 13:25:23] 2025-11-25 12:24:42,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:25:23] 2025-11-25 12:24:42,593 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:25:23] 2025-11-25 12:24:42,593 | INFO     | update_server=False
[2025-11-25 13:25:23] 2025-11-25 12:24:42,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:25:23] 2025-11-25 12:24:42,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:25:23] 2025-11-25 12:24:42,594 | INFO     | aborting loop
[2025-11-25 13:25:23] 2025-11-25 12:24:42,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:25:23] 2025-11-25 12:24:42,754 | INFO     | all payload control threads have been joined
[2025-11-25 13:25:23] 2025-11-25 12:24:43,154 | INFO     | all data control threads have been joined
[2025-11-25 13:25:23] 2025-11-25 12:24:43,598 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:43,599 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:43,726 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:43,759 | INFO     | [payload] control thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:43,926 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:43,956 | INFO     | all job control threads have been joined
[2025-11-25 13:25:23] 2025-11-25 12:24:43,991 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,157 | INFO     | [data] control thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,546 | INFO     | [job] validate thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,600 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,616 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,650 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,804 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:44,961 | INFO     | [job] control thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:45,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:25:23] 2025-11-25 12:24:45,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:25:23] 2025-11-25 12:24:46,461 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:24:49,579 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:25:23] 2025-11-25 12:25:12,419 | INFO     | PID=1175055 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:25:23] 2025-11-25 12:25:12,419 | INFO     | .. there are 8 such processes running
[2025-11-25 13:25:23] 2025-11-25 12:25:12,420 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:25:23] 2025-11-25 12:25:12,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:25:23] 2025-11-25 12:25:12,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:25:23] 2025-11-25 12:25:17,848 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:25:23] 2025-11-25 12:25:17,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858036926272)>', '<ExcThread(monitor, started 139857405925120)>']
[2025-11-25 13:25:23] 2025-11-25 12:25:18,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:25:23] 2025-11-25 12:25:18,451 | INFO     | [monitor] control thread has ended
[2025-11-25 13:25:23] 2025-11-25 12:25:22,928 | INFO     | all workflow threads have been joined
[2025-11-25 13:25:23] 2025-11-25 12:25:22,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:25:23] 2025-11-25 12:25:22,929 | INFO     | traces error code: 0
[2025-11-25 13:25:23] 2025-11-25 12:25:22,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:25:23] 2025-11-25 12:25:23,115 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:25:23] 2025-11-25 12:25:23,119 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:25:23] 2025-11-25 12:25:23,124 [wrapper] pilotpid: 1175055
[2025-11-25 13:25:23] 2025-11-25 12:25:23,127 [wrapper] Pilot exit status: 0
[2025-11-25 13:25:23] 2025-11-25 12:25:23,142 [wrapper] pandaids: 6892537401
[2025-11-25 13:25:23] 2025-11-25 12:25:23,229 [wrapper] cleanup supervisor_pilot 1658723 1175056
[2025-11-25 13:25:23] 2025-11-25 12:25:23,233 [wrapper] Test setup, not cleaning
[2025-11-25 13:25:23] 2025-11-25 12:25:23,237 [wrapper] apfmon messages muted
[2025-11-25 13:25:23] 2025-11-25 12:25:23,240 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:25:23] 2025-11-25 12:25:23,243 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:25:23]  *** Error codes and diagnostics ***
[2025-11-25 13:25:23]     "exeErrorCode": 0,
[2025-11-25 13:25:23]     "exeErrorDiag": "",
[2025-11-25 13:25:23]     "pilotErrorCode": 0,
[2025-11-25 13:25:23]     "pilotErrorDiag": "",
[2025-11-25 13:25:23]  *** Listing of results directory ***
[2025-11-25 13:25:23] total 1302472
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-25 13:25:23] -rwx------ 1 boinc boinc     36292 Nov 19 08:31 runpilot2-wrapper.sh
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:31 queuedata.json
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc       100 Nov 25 07:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:25:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 07:53 run_atlas
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc       105 Nov 25 07:53 job.xml
[2025-11-25 13:25:23] -rw-r--r-- 2 boinc boinc 410498942 Nov 25 07:53 EVNT.47493027._000220.pool.root.1
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc      6665 Nov 25 07:53 init_data.xml
[2025-11-25 13:25:23] -rw-r--r-- 2 boinc boinc     15120 Nov 25 07:53 start_atlas.sh
[2025-11-25 13:25:23] drwxrwx--x 2 boinc boinc      4096 Nov 25 07:53 shared
[2025-11-25 13:25:23] -rw-r--r-- 2 boinc boinc    590097 Nov 25 07:53 input.tar.gz
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc         0 Nov 25 07:53 boinc_lockfile
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc      2773 Nov 25 07:53 pandaJob.out
[2025-11-25 13:25:23] -rw------- 1 boinc boinc    991801 Nov 25 07:53 agis_schedconf.cvmfs.json
[2025-11-25 13:25:23] drwx------ 5 boinc boinc      4096 Nov 25 07:53 pilot3
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc       533 Nov 25 13:17 boinc_task_state.xml
[2025-11-25 13:25:23] -rw------- 1 boinc boinc 909647294 Nov 25 13:23 HITS.47493029._002155.pool.root.1
[2025-11-25 13:25:23] -rw------- 1 boinc boinc      1034 Nov 25 13:24 memory_monitor_summary.json
[2025-11-25 13:25:23] -rw------- 1 boinc boinc   1516240 Nov 25 13:24 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:25:23] -rw------- 1 boinc boinc   2069910 Nov 25 13:24 log.47493029._002155.job.log.tgz.1
[2025-11-25 13:25:23] -rw------- 1 boinc boinc      8597 Nov 25 13:24 heartbeat.json
[2025-11-25 13:25:23] -rw------- 1 boinc boinc        95 Nov 25 13:25 pilot_heartbeat.json
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc      8192 Nov 25 13:25 boinc_mmap_file
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc        29 Nov 25 13:25 wrapper_checkpoint.txt
[2025-11-25 13:25:23] -rw------- 1 boinc boinc      4826 Nov 25 13:25 pilotlog.txt
[2025-11-25 13:25:23] -rw------- 1 boinc boinc   2762582 Nov 25 13:25 log.47493029._002155.job.log.1
[2025-11-25 13:25:23] -rw------- 1 boinc boinc       353 Nov 25 13:25 output.list
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc       620 Nov 25 13:25 runtime_log
[2025-11-25 13:25:23] -rw------- 1 boinc boinc   4853760 Nov 25 13:25 result.tar.gz
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc      8765 Nov 25 13:25 runtime_log.err
[2025-11-25 13:25:23] -rw------- 1 boinc boinc       671 Nov 25 13:25 bnPKDmAqrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCtGKDmhTaj1m.diag
[2025-11-25 13:25:23] -rw-r--r-- 1 boinc boinc     21361 Nov 25 13:25 stderr.txt
[2025-11-25 13:25:23] HITS file was successfully produced:
[2025-11-25 13:25:23] -rw------- 1 boinc boinc 909647294 Nov 25 13:23 shared/HITS.pool.root.1
[2025-11-25 13:25:23]  *** Contents of shared directory: ***
[2025-11-25 13:25:23] total 1294552
[2025-11-25 13:25:23] -rw-r--r-- 2 boinc boinc 410498942 Nov 25 07:53 ATLAS.root_0
[2025-11-25 13:25:23] -rw-r--r-- 2 boinc boinc     15120 Nov 25 07:53 start_atlas.sh
[2025-11-25 13:25:23] -rw-r--r-- 2 boinc boinc    590097 Nov 25 07:53 input.tar.gz
[2025-11-25 13:25:23] -rw------- 1 boinc boinc 909647294 Nov 25 13:23 HITS.pool.root.1
[2025-11-25 13:25:23] -rw------- 1 boinc boinc   4853760 Nov 25 13:25 result.tar.gz
13:25:25 (1170872): run_atlas exited; CPU time 227294.535307
13:25:25 (1170872): called boinc_finish(0)

</stderr_txt>
]]>

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