Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:34:25 (27463): wrapper (7.7.26015): starting
11:34:25 (27463): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 11:34:25] Arguments: --nthreads 12
[2025-11-24 11:34:25] Threads: 12
[2025-11-24 11:34:25] Checking for CVMFS
[2025-11-24 11:34:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:34:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:34:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:34:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:34:26] 2.11.2.0 2925 285048 94984 153252 3 81 15875347 20275200 1 130560 1 127316800 99.975 15684073 13644 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 11:34:26] CVMFS is ok
[2025-11-24 11:34:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:34:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:34:26] Further information can be found at the LHC@home message board.
[2025-11-24 11:34:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:34:26] Checking for apptainer binary...
[2025-11-24 11:34:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:34:26] Running /usr/bin/apptainer --version
[2025-11-24 11:34:26] apptainer version 1.3.2-1.el7
[2025-11-24 11:34:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:34:27] c-205-10.aglt2.org
[2025-11-24 11:34:27] apptainer works
[2025-11-24 11:34:27] Set ATHENA_PROC_NUMBER=12
[2025-11-24 11:34:27] Set ATHENA_CORE_NUMBER=12
[2025-11-24 11:34:27] Starting ATLAS job with PandaID=6895367210
[2025-11-24 11:34:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:50:50]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:50:50] 2025-11-25 01:50:17,065 | INFO     | monitor loop #2508: job 0:6895367210 is in state 'finished'
[2025-11-24 20:50:50] 2025-11-25 01:50:17,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,171 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 20:50:50] 2025-11-25 01:50:17,174 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-24 20:50:50] 2025-11-25 01:50:17,177 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895367210/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,177 | INFO     | extracted standard info from prmon json
[2025-11-24 20:50:50] 2025-11-25 01:50:17,178 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:50:50] 2025-11-25 01:50:17,178 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:50:50] 2025-11-25 01:50:17,186 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:50:50] 2025-11-25 01:50:17,186 | INFO     | sum of square deviations: 50472502404.45416
[2025-11-24 20:50:50] 2025-11-25 01:50:17,192 | INFO     | sum of deviations: 626480364868.3248
[2025-11-24 20:50:50] 2025-11-25 01:50:17,192 | INFO     | mean x: 1764018734.5860806
[2025-11-24 20:50:50] 2025-11-25 01:50:17,192 | INFO     | mean y: 3443177.227106227
[2025-11-24 20:50:50] 2025-11-25 01:50:17,193 | INFO     | intersect: -21892104850.53468
[2025-11-24 20:50:50] 2025-11-25 01:50:17,193 | INFO     | chi2: 5.661643860351695
[2025-11-24 20:50:50] 2025-11-25 01:50:17,194 | INFO     | sum of square deviations: 49098565396.9169
[2025-11-24 20:50:50] 2025-11-25 01:50:17,200 | INFO     | sum of deviations: 826442561778.7867
[2025-11-24 20:50:50] 2025-11-25 01:50:17,200 | INFO     | mean x: 1764018582.0868762
[2025-11-24 20:50:50] 2025-11-25 01:50:17,200 | INFO     | mean y: 3465358.11090573
[2025-11-24 20:50:50] 2025-11-25 01:50:17,200 | INFO     | intersect: -29689052625.25172
[2025-11-24 20:50:50] 2025-11-25 01:50:17,201 | INFO     | chi2: 2.96853454451765
[2025-11-24 20:50:50] 2025-11-25 01:50:17,201 | INFO     | current chi2=2.96853454451765 (change=47.56762138808837 %)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,201 | INFO     | sum of square deviations: 47749791651.87865
[2025-11-24 20:50:50] 2025-11-25 01:50:17,207 | INFO     | sum of deviations: 884568343274.6908
[2025-11-24 20:50:50] 2025-11-25 01:50:17,207 | INFO     | mean x: 1764018429.5876865
[2025-11-24 20:50:50] 2025-11-25 01:50:17,207 | INFO     | mean y: 3471907.3470149254
[2025-11-24 20:50:50] 2025-11-25 01:50:17,208 | INFO     | intersect: -32675097061.96932
[2025-11-24 20:50:50] 2025-11-25 01:50:17,208 | INFO     | chi2: 2.544750006190863
[2025-11-24 20:50:50] 2025-11-25 01:50:17,208 | INFO     | current chi2=2.544750006190863 (change=14.275883671606282 %)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,208 | INFO     | right removable region: 535
[2025-11-24 20:50:50] 2025-11-25 01:50:17,209 | INFO     | sum of square deviations: 49098536726.9169
[2025-11-24 20:50:50] 2025-11-25 01:50:17,215 | INFO     | sum of deviations: 441899510714.4578
[2025-11-24 20:50:50] 2025-11-25 01:50:17,215 | INFO     | mean x: 1764018887.0868762
[2025-11-24 20:50:50] 2025-11-25 01:50:17,215 | INFO     | mean y: 3463618.5434380774
[2025-11-24 20:50:50] 2025-11-25 01:50:17,215 | INFO     | intersect: -15873161940.185352
[2025-11-24 20:50:50] 2025-11-25 01:50:17,216 | INFO     | chi2: 3.2879492047225494
[2025-11-24 20:50:50] 2025-11-25 01:50:17,216 | INFO     | current chi2=3.2879492047225494 (change=41.9258913873416 %)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,217 | INFO     | sum of square deviations: 47749767190.05224
[2025-11-24 20:50:50] 2025-11-25 01:50:17,222 | INFO     | sum of deviations: 397220384138.4168
[2025-11-24 20:50:50] 2025-11-25 01:50:17,223 | INFO     | mean x: 1764019039.585821
[2025-11-24 20:50:50] 2025-11-25 01:50:17,223 | INFO     | mean y: 3468666.186567164
[2025-11-24 20:50:50] 2025-11-25 01:50:17,223 | INFO     | intersect: -14671038912.936026
[2025-11-24 20:50:50] 2025-11-25 01:50:17,223 | INFO     | chi2: 3.225449023071869
[2025-11-24 20:50:50] 2025-11-25 01:50:17,224 | INFO     | current chi2=3.225449023071869 (change=1.900886472361251 %)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,224 | INFO     | left removable region: 20
[2025-11-24 20:50:50] 2025-11-25 01:50:17,224 | INFO     | sum of square deviations: 42354426743.410065
[2025-11-24 20:50:50] 2025-11-25 01:50:17,230 | INFO     | sum of deviations: 599457920098.8907
[2025-11-24 20:50:50] 2025-11-25 01:50:17,230 | INFO     | mean x: 1764019009.0834951
[2025-11-24 20:50:50] 2025-11-25 01:50:17,230 | INFO     | mean y: 3504449.304854369
[2025-11-24 20:50:50] 2025-11-25 01:50:17,230 | INFO     | intersect: -24963311241.6814
[2025-11-24 20:50:50] 2025-11-25 01:50:17,231 | INFO     | chi2: 0.06988925783672921
[2025-11-24 20:50:50] 2025-11-25 01:50:17,231 | INFO     | current memory leak: 14.15 B/s (using 515 data points, chi2=0.07)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,231 | INFO     | could have reported an average CPU frequency of 2444 MHz (22 samples)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,231 | INFO     | ..............................
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . Timing measurements:
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . get job = 0 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . initial setup = 2 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . payload setup = 7 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . stage-in = 0 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . payload execution = 33294 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . stage-out = 3 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | . log creation = 0 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,232 | INFO     | ..............................
[2025-11-24 20:50:50] 2025-11-25 01:50:17,732 | INFO     | 
[2025-11-24 20:50:50] 2025-11-25 01:50:17,732 | INFO     | job summary report
[2025-11-24 20:50:50] 2025-11-25 01:50:17,732 | INFO     | --------------------------------------------------
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | PanDA job id: 6895367210
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | task id: 47556137
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | errors: (none)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | pilot state: finished 
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | transexitcode: 0
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | exeerrorcode: 0
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | exeerrordiag: 
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | exitcode: 0
[2025-11-24 20:50:50] 2025-11-25 01:50:17,733 | INFO     | exitmsg: OK
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | cpuconsumptiontime: 323837 s
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | nevents: 1000
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | neventsw: 0
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | pid: 7398
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | pgrp: 7398
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | corecount: 12
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | event service: False
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | sizes: {0: 2284309, 5: 2284571, 11: 2284627, 33306: 2325478, 33310: 2334472, 33311: 2334528, 33318: 2334902}
[2025-11-24 20:50:50] 2025-11-25 01:50:17,734 | INFO     | --------------------------------------------------
[2025-11-24 20:50:50] 2025-11-25 01:50:17,735 | INFO     | 
[2025-11-24 20:50:50] 2025-11-25 01:50:17,735 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 20:50:50] 2025-11-25 01:50:17,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,781 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,781 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:50:50] 2025-11-25 01:50:17,781 | INFO     | job 6895367210 has completed (purged errors)
[2025-11-24 20:50:50] 2025-11-25 01:50:17,781 | INFO     | overall cleanup function is called
[2025-11-24 20:50:50] 2025-11-25 01:50:18,798 | INFO     | --- collectZombieJob: --- 10, [7398]
[2025-11-24 20:50:50] 2025-11-25 01:50:18,798 | INFO     | zombie collector waiting for pid 7398
[2025-11-24 20:50:50] 2025-11-25 01:50:18,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:50:50] 2025-11-25 01:50:18,798 | INFO     | collected zombie processes
[2025-11-24 20:50:50] 2025-11-25 01:50:18,799 | INFO     | will attempt to kill all subprocesses of pid=7398
[2025-11-24 20:50:50] 2025-11-25 01:50:18,890 | INFO     | process IDs to be killed: [7398] (in reverse order)
[2025-11-24 20:50:50] 2025-11-25 01:50:18,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:50:50] 2025-11-25 01:50:18,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:50:50] 2025-11-25 01:50:18,947 | INFO     | did not find any defunct processes belonging to 7398
[2025-11-24 20:50:50] 2025-11-25 01:50:18,949 | INFO     | did not find any defunct processes belonging to 7398
[2025-11-24 20:50:50] 2025-11-25 01:50:18,951 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:50:50] 2025-11-25 01:50:18,951 | INFO     | ready for new job
[2025-11-24 20:50:50] 2025-11-25 01:50:18,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:50:50] 2025-11-25 01:50:18,954 | INFO     | ***************************************
[2025-11-24 20:50:50] 2025-11-25 01:50:18,954 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:50:50] 2025-11-25 01:50:18,955 | INFO     | ***************************************
[2025-11-24 20:50:50] 2025-11-25 01:50:18,955 | INFO     | 
[2025-11-24 20:50:50] 2025-11-25 01:50:18,955 | INFO     | architecture information:
[2025-11-24 20:50:50] 2025-11-25 01:50:18,956 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:50:50] 2025-11-25 01:50:18,973 | INFO     | cat /etc/os-release:
[2025-11-24 20:50:50] NAME="CentOS Linux"
[2025-11-24 20:50:50] VERSION="7 (Core)"
[2025-11-24 20:50:50] ID="centos"
[2025-11-24 20:50:50] ID_LIKE="rhel fedora"
[2025-11-24 20:50:50] VERSION_ID="7"
[2025-11-24 20:50:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:50:50] ANSI_COLOR="0;31"
[2025-11-24 20:50:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:50:50] HOME_URL="https://www.centos.org/"
[2025-11-24 20:50:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:50:50] 
[2025-11-24 20:50:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:50:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:50:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:50:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:50:50] 
[2025-11-24 20:50:50] 2025-11-25 01:50:18,973 | INFO     | ***************************************
[2025-11-24 20:50:50] 2025-11-25 01:50:19,476 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 20:50:50] 2025-11-25 01:50:19,494 | INFO     | sufficient remaining disk space (28232908800 B)
[2025-11-24 20:50:50] 2025-11-25 01:50:19,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:50:50] 2025-11-25 01:50:19,495 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:50:50] 2025-11-25 01:50:19,495 | INFO     | update_server=False
[2025-11-24 20:50:50] 2025-11-25 01:50:19,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:50:50] 2025-11-25 01:50:19,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:50:50] 2025-11-25 01:50:19,538 | INFO     | all data control threads have been joined
[2025-11-24 20:50:50] 2025-11-25 01:50:19,568 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 20:50:50] 2025-11-25 01:50:19,568 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 20:50:50] 2025-11-25 01:50:19,568 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:50:50] 2025-11-25 01:50:19,569 | INFO     | will abort loop
[2025-11-24 20:50:50] 2025-11-25 01:50:20,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:50:50] 2025-11-25 01:50:20,500 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:20,523 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:20,537 | INFO     | all job control threads have been joined
[2025-11-24 20:50:50] 2025-11-25 01:50:20,544 | INFO     | [data] control thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:20,563 | INFO     | all payload control threads have been joined
[2025-11-24 20:50:50] 2025-11-25 01:50:20,574 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:20,597 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,028 | INFO     | [job] validate thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,313 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,501 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,543 | INFO     | [job] control thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,569 | INFO     | [payload] control thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,599 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,780 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:21,971 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:22,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:50:50] 2025-11-25 01:50:23,331 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:24,223 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:50:50] 2025-11-25 01:50:32,868 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:50:50] 2025-11-25 01:50:33,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714482538304)>', '<ExcThread(monitor, started 140713597597440)>']
[2025-11-24 20:50:50] 2025-11-25 01:50:38,649 | INFO     | all workflow threads have been joined
[2025-11-24 20:50:50] 2025-11-25 01:50:38,649 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:50:50] 2025-11-25 01:50:38,650 | INFO     | traces error code: 0
[2025-11-24 20:50:50] 2025-11-25 01:50:38,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:50:50] 2025-11-25 01:50:50,200 | INFO     | PID=32638 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 20:50:50] 2025-11-25 01:50:50,200 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:50:50] 2025-11-25 01:50:50,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:50:50] 2025-11-25 01:50:50,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:50:50] 2025-11-25 01:50:50,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:50:50] 2025-11-25 01:50:50,201 | INFO     | [monitor] control thread has ended
[2025-11-24 20:50:50] 2025-11-25 01:50:50,297 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:50:50] 2025-11-25 01:50:50,301 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:50:50] 2025-11-25 01:50:50,305 [wrapper] pilotpid: 32638
[2025-11-24 20:50:50] 2025-11-25 01:50:50,308 [wrapper] Pilot exit status: 0
[2025-11-24 20:50:50] 2025-11-25 01:50:50,323 [wrapper] pandaids: 6895367210
[2025-11-24 20:50:50] 2025-11-25 01:50:50,362 [wrapper] cleanup supervisor_pilot 23825 32639
[2025-11-24 20:50:50] 2025-11-25 01:50:50,366 [wrapper] Test setup, not cleaning
[2025-11-24 20:50:50] 2025-11-25 01:50:50,370 [wrapper] apfmon messages muted
[2025-11-24 20:50:50] 2025-11-25 01:50:50,374 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:50:50] 2025-11-25 01:50:50,378 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:50:50]  *** Error codes and diagnostics ***
[2025-11-24 20:50:50]     "exeErrorCode": 0,
[2025-11-24 20:50:50]     "exeErrorDiag": "",
[2025-11-24 20:50:50]     "pilotErrorCode": 0,
[2025-11-24 20:50:50]     "pilotErrorDiag": "",
[2025-11-24 20:50:50]  *** Listing of results directory ***
[2025-11-24 20:50:50] total 1328596
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 14:07 queuedata.json
[2025-11-24 20:50:50] -rwx------ 1 boincer umatlas     36292 Nov 23 14:07 runpilot2-wrapper.sh
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas       100 Nov 24 11:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:50:50] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 11:34 run_atlas
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas       105 Nov 24 11:34 job.xml
[2025-11-24 20:50:50] -rw-r--r-- 2 boincer umatlas 411048012 Nov 24 11:34 EVNT.47483658._000858.pool.root.1
[2025-11-24 20:50:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 11:34 start_atlas.sh
[2025-11-24 20:50:50] drwxrwx--x 2 boincer umatlas      4096 Nov 24 11:34 shared
[2025-11-24 20:50:50] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 11:34 input.tar.gz
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas         0 Nov 24 11:34 boinc_lockfile
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 11:34 pandaJob.out
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas        57 Nov 24 11:34 setup.sh.local
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas    991965 Nov 24 11:34 agis_schedconf.cvmfs.json
[2025-11-24 20:50:50] drwx------ 5 boincer umatlas      4096 Nov 24 11:34 pilot3
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas       532 Nov 24 20:39 boinc_task_state.xml
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas      5956 Nov 24 20:46 init_data.xml
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas 931642556 Nov 24 20:49 HITS.47556137._008450.pool.root.1
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas        95 Nov 24 20:49 pilot_heartbeat.json
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas      1065 Nov 24 20:50 memory_monitor_summary.json
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas   1516227 Nov 24 20:50 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas   2283554 Nov 24 20:50 log.47556137._008450.job.log.tgz.1
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas      8678 Nov 24 20:50 heartbeat.json
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 20:50 boinc_mmap_file
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas        29 Nov 24 20:50 wrapper_checkpoint.txt
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas       745 Nov 24 20:50 pilotlog.txt
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas   4653658 Nov 24 20:50 log.47556137._008450.job.log.1
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas       353 Nov 24 20:50 output.list
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas       620 Nov 24 20:50 runtime_log
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas   6952960 Nov 24 20:50 result.tar.gz
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 20:50 runtime_log.err
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas       670 Nov 24 20:50 5HlNDmnbUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmThIKDmXOKbVm.diag
[2025-11-24 20:50:50] -rw-r--r-- 1 boincer umatlas     21289 Nov 24 20:50 stderr.txt
[2025-11-24 20:50:50] HITS file was successfully produced:
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas 931642556 Nov 24 20:49 shared/HITS.pool.root.1
[2025-11-24 20:50:50]  *** Contents of shared directory: ***
[2025-11-24 20:50:50] total 1318620
[2025-11-24 20:50:50] -rw-r--r-- 2 boincer umatlas 411048012 Nov 24 11:34 ATLAS.root_0
[2025-11-24 20:50:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 11:34 start_atlas.sh
[2025-11-24 20:50:50] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 11:34 input.tar.gz
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas 931642556 Nov 24 20:49 HITS.pool.root.1
[2025-11-24 20:50:50] -rw------- 1 boincer umatlas   6952960 Nov 24 20:50 result.tar.gz
20:50:52 (27463): run_atlas exited; CPU time 312257.258783
20:50:52 (27463): called boinc_finish(0)

</stderr_txt>
]]>

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