Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:56:10 (1504352): wrapper (7.7.26015): starting
22:56:10 (1504352): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:56:10] Arguments: --nthreads 8
[2025-11-24 22:56:10] Threads: 8
[2025-11-24 22:56:10] Checking for CVMFS
[2025-11-24 22:56:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:56:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:56:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:56:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:56:12] 2.13.2.0 11163 35352 285696 153268 1 381 34622086 40960000 11663 16776704 0 31309501 99.631 28048871 39775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 22:56:12] CVMFS is ok
[2025-11-24 22:56:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:56:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:56:12] Further information can be found at the LHC@home message board.
[2025-11-24 22:56:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:56:12] Checking for apptainer binary...
[2025-11-24 22:56:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:56:12] Running /usr/bin/apptainer --version
[2025-11-24 22:56:12] apptainer version 1.4.4-1.el9
[2025-11-24 22:56:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:56:14] c-210-35-1.aglt2.org
[2025-11-24 22:56:14] apptainer works
[2025-11-24 22:56:14] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:56:14] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:56:14] Starting ATLAS job with PandaID=6895367212
[2025-11-24 22:56:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:26:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:26:18] 2025-11-27 01:24:55,605 | INFO     | monitor loop #9511: job 0:6895367212 is in state 'finished'
[2025-11-26 20:26:18] 2025-11-27 01:24:55,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:26:18] 2025-11-27 01:24:57,058 | INFO     | PID=1509910 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:26:18] 2025-11-27 01:24:57,058 | INFO     | .. there are 11 such processes running
[2025-11-26 20:26:18] 2025-11-27 01:24:58,060 | INFO     | time since job start (163673s) is within the limit (172800.0s)
[2025-11-26 20:26:18] 2025-11-27 01:24:58,110 | INFO     | monitor loop #9512: job 0:6895367212 is in state 'finished'
[2025-11-26 20:26:18] 2025-11-27 01:24:58,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:26:18] 2025-11-27 01:25:00,068 | INFO     | time since job start (163675s) is within the limit (172800.0s)
[2025-11-26 20:26:18] 2025-11-27 01:25:00,616 | INFO     | monitor loop #9513: job 0:6895367212 is in state 'finished'
[2025-11-26 20:26:18] 2025-11-27 01:25:00,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:26:18] 2025-11-27 01:25:02,074 | INFO     | time since job start (163677s) is within the limit (172800.0s)
[2025-11-26 20:26:18] 2025-11-27 01:25:03,116 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:26:18] 2025-11-27 01:25:03,129 | INFO     | monitor loop #9514: job 0:6895367212 is in state 'finished'
[2025-11-26 20:26:18] 2025-11-27 01:25:03,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:26:18] 2025-11-27 01:25:03,180 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2774.955999999999
[2025-11-26 20:26:18] 2025-11-27 01:25:03,244 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895367212/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:26:18] 2025-11-27 01:25:03,245 | INFO     | extracted standard info from prmon json
[2025-11-26 20:26:18] 2025-11-27 01:25:03,245 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:26:18] 2025-11-27 01:25:03,245 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:26:18] 2025-11-27 01:25:03,414 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:26:18] 2025-11-27 01:25:03,422 | INFO     | sum of square deviations: 5975673280581.743
[2025-11-26 20:26:18] 2025-11-27 01:25:03,774 | INFO     | sum of deviations: 9345686984259.736
[2025-11-26 20:26:18] 2025-11-27 01:25:03,774 | INFO     | mean x: 1764124906.009698
[2025-11-26 20:26:18] 2025-11-27 01:25:03,774 | INFO     | mean y: 2904578.8183513614
[2025-11-26 20:26:18] 2025-11-27 01:25:03,774 | INFO     | intersect: -2756108238.411547
[2025-11-26 20:26:18] 2025-11-27 01:25:03,789 | INFO     | chi2: 32.70237227684856
[2025-11-26 20:26:18] 2025-11-27 01:25:03,797 | INFO     | sum of square deviations: 5942307452946.058
[2025-11-26 20:26:18] 2025-11-27 01:25:04,095 | INFO     | time since job start (163679s) is within the limit (172800.0s)
[2025-11-26 20:26:18] 2025-11-27 01:25:04,659 | INFO     | sum of deviations: 10316152349255.74
[2025-11-26 20:26:18] 2025-11-27 01:25:04,659 | INFO     | mean x: 1764124753.5186846
[2025-11-26 20:26:18] 2025-11-27 01:25:04,659 | INFO     | mean y: 2909013.695440957
[2025-11-26 20:26:18] 2025-11-27 01:25:04,659 | INFO     | intersect: -3059702583.6512012
[2025-11-26 20:26:18] 2025-11-27 01:25:04,680 | INFO     | chi2: 28.98285395372076
[2025-11-26 20:26:18] 2025-11-27 01:25:04,680 | INFO     | current chi2=28.98285395372076 (change=11.373848635932163 %)
[2025-11-26 20:26:18] 2025-11-27 01:25:04,680 | INFO     | right removable region: 2675
[2025-11-26 20:26:18] 2025-11-27 01:25:04,804 | INFO     | sum of square deviations: 5942299423446.028
[2025-11-26 20:26:18] 2025-11-27 01:25:05,376 | INFO     | sum of deviations: 8336133218915.855
[2025-11-26 20:26:18] 2025-11-27 01:25:05,376 | INFO     | mean x: 1764125058.5190582
[2025-11-26 20:26:18] 2025-11-27 01:25:05,376 | INFO     | mean y: 2909191.7279521674
[2025-11-26 20:26:18] 2025-11-27 01:25:05,376 | INFO     | intersect: -2471887255.6907783
[2025-11-26 20:26:18] 2025-11-27 01:25:05,387 | INFO     | chi2: 29.21328873851719
[2025-11-26 20:26:18] 2025-11-27 01:25:05,388 | INFO     | current chi2=29.21328873851719 (change=10.66920622392108 %)
[2025-11-26 20:26:18] 2025-11-27 01:25:05,388 | INFO     | left removable region: 10
[2025-11-26 20:26:18] 2025-11-27 01:25:05,399 | INFO     | sum of square deviations: 5869324241735.922
[2025-11-26 20:26:18] 2025-11-27 01:25:05,654 | INFO     | monitor loop #9515: job 0:6895367212 is in state 'finished'
[2025-11-26 20:26:18] 2025-11-27 01:25:05,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:26:18] 2025-11-27 01:25:05,917 | INFO     | sum of deviations: 8708662998385.63
[2025-11-26 20:26:18] 2025-11-27 01:25:05,917 | INFO     | mean x: 1764125028.0390244
[2025-11-26 20:26:18] 2025-11-27 01:25:05,918 | INFO     | mean y: 2918031.734333959
[2025-11-26 20:26:18] 2025-11-27 01:25:05,918 | INFO     | intersect: -2614618455.168905
[2025-11-26 20:26:18] 2025-11-27 01:25:05,929 | INFO     | chi2: 22.83436459856356
[2025-11-26 20:26:18] 2025-11-27 01:25:05,929 | INFO     | current memory leak: 1.48 B/s (using 2665 data points, chi2=22.83)
[2025-11-26 20:26:18] 2025-11-27 01:25:05,932 | INFO     | could have reported an average CPU frequency of 2785 MHz (92 samples)
[2025-11-26 20:26:18] 2025-11-27 01:25:05,932 | INFO     | ..............................
[2025-11-26 20:26:18] 2025-11-27 01:25:05,932 | INFO     | . Timing measurements:
[2025-11-26 20:26:18] 2025-11-27 01:25:05,932 | INFO     | . get job = 0 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,932 | INFO     | . initial setup = 4 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,932 | INFO     | . payload setup = 43 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,941 | INFO     | . stage-in = 0 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,941 | INFO     | . payload execution = 163522 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,941 | INFO     | . stage-out = 8 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,941 | INFO     | . log creation = 3 s
[2025-11-26 20:26:18] 2025-11-27 01:25:05,941 | INFO     | ..............................
[2025-11-26 20:26:18] 2025-11-27 01:25:06,122 | INFO     | time since job start (163681s) is within the limit (172800.0s)
[2025-11-26 20:26:18] 2025-11-27 01:25:06,413 | INFO     | 
[2025-11-26 20:26:18] 2025-11-27 01:25:06,413 | INFO     | job summary report
[2025-11-26 20:26:18] 2025-11-27 01:25:06,413 | INFO     | --------------------------------------------------
[2025-11-26 20:26:18] 2025-11-27 01:25:06,413 | INFO     | PanDA job id: 6895367212
[2025-11-26 20:26:18] 2025-11-27 01:25:06,413 | INFO     | task id: 47556137
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | errors: (none)
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | pilot state: finished 
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | transexitcode: 0
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | exeerrorcode: 0
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | exeerrordiag: 
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | exitcode: 0
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | exitmsg: OK
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | cpuconsumptiontime: 251512 s
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | nevents: 1000
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | neventsw: 0
[2025-11-26 20:26:18] 2025-11-27 01:25:06,414 | INFO     | pid: 1517797
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | pgrp: 1517797
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | corecount: 8
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | event service: False
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | sizes: {0: 2284138, 1: 2284166, 2: 2284365, 13: 2284365, 24: 2284421, 32: 2284711, 35: 2284867, 163570: 2384514, 163580: 2393513, 163583: 2393569, 163619: 2393815}
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | --------------------------------------------------
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | 
[2025-11-26 20:26:18] 2025-11-27 01:25:06,415 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:26:18] 2025-11-27 01:25:06,461 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,463 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:26:18] 2025-11-27 01:25:06,464 | INFO     | job 6895367212 has completed (purged errors)
[2025-11-26 20:26:18] 2025-11-27 01:25:06,464 | INFO     | overall cleanup function is called
[2025-11-26 20:26:18] 2025-11-27 01:25:07,483 | INFO     | --- collectZombieJob: --- 10, [1517797]
[2025-11-26 20:26:18] 2025-11-27 01:25:07,483 | INFO     | zombie collector waiting for pid 1517797
[2025-11-26 20:26:18] 2025-11-27 01:25:07,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:26:18] 2025-11-27 01:25:07,483 | INFO     | collected zombie processes
[2025-11-26 20:26:18] 2025-11-27 01:25:07,483 | INFO     | will attempt to kill all subprocesses of pid=1517797
[2025-11-26 20:26:18] 2025-11-27 01:25:08,481 | INFO     | process IDs to be killed: [1517797] (in reverse order)
[2025-11-26 20:26:18] 2025-11-27 01:25:09,001 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:26:18] 2025-11-27 01:25:09,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:26:18] 2025-11-27 01:25:09,031 | INFO     | did not find any defunct processes belonging to 1517797
[2025-11-26 20:26:18] 2025-11-27 01:25:09,064 | INFO     | did not find any defunct processes belonging to 1517797
[2025-11-26 20:26:18] 2025-11-27 01:25:09,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:26:18] 2025-11-27 01:25:09,069 | INFO     | ready for new job
[2025-11-26 20:26:18] 2025-11-27 01:25:09,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:26:18] 2025-11-27 01:25:09,100 | INFO     | ***************************************
[2025-11-26 20:26:18] 2025-11-27 01:25:09,100 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:26:18] 2025-11-27 01:25:09,100 | INFO     | ***************************************
[2025-11-26 20:26:18] 2025-11-27 01:25:09,100 | INFO     | 
[2025-11-26 20:26:18] 2025-11-27 01:25:09,113 | INFO     | architecture information:
[2025-11-26 20:26:18] 2025-11-27 01:25:09,117 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:26:18] 2025-11-27 01:25:09,163 | INFO     | cat /etc/os-release:
[2025-11-26 20:26:18] NAME="CentOS Linux"
[2025-11-26 20:26:18] VERSION="7 (Core)"
[2025-11-26 20:26:18] ID="centos"
[2025-11-26 20:26:18] ID_LIKE="rhel fedora"
[2025-11-26 20:26:18] VERSION_ID="7"
[2025-11-26 20:26:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:26:18] ANSI_COLOR="0;31"
[2025-11-26 20:26:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:26:18] HOME_URL="https://www.centos.org/"
[2025-11-26 20:26:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:26:18] 
[2025-11-26 20:26:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:26:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:26:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:26:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:26:18] 
[2025-11-26 20:26:18] 2025-11-27 01:25:09,163 | INFO     | ***************************************
[2025-11-26 20:26:18] 2025-11-27 01:25:09,670 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:26:18] 2025-11-27 01:25:09,903 | INFO     | sufficient remaining disk space (68602036224 B)
[2025-11-26 20:26:18] 2025-11-27 01:25:09,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:26:18] 2025-11-27 01:25:09,904 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:26:18] 2025-11-27 01:25:09,904 | INFO     | update_server=False
[2025-11-26 20:26:18] 2025-11-27 01:25:09,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:26:18] 2025-11-27 01:25:09,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:26:18] 2025-11-27 01:25:09,905 | INFO     | aborting loop
[2025-11-26 20:26:18] 2025-11-27 01:25:10,121 | INFO     | all job control threads have been joined
[2025-11-26 20:26:18] 2025-11-27 01:25:10,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:26:18] 2025-11-27 01:25:10,309 | INFO     | all payload control threads have been joined
[2025-11-26 20:26:18] 2025-11-27 01:25:10,316 | INFO     | all data control threads have been joined
[2025-11-26 20:26:18] 2025-11-27 01:25:10,911 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:10,934 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,014 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,127 | INFO     | [job] control thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:26:18] 2025-11-27 01:25:11,254 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,316 | INFO     | [payload] control thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,345 | INFO     | [data] control thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,544 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,607 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:11,621 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:12,162 | INFO     | [job] validate thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:12,194 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:12,194 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:12,309 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:13,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:26:18] 2025-11-27 01:25:17,012 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:26:18] 2025-11-27 01:25:39,881 | INFO     | PID=1509910 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:26:18] 2025-11-27 01:25:39,883 | INFO     | .. there are 11 such processes running
[2025-11-26 20:26:18] 2025-11-27 01:25:39,883 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:26:18] 2025-11-27 01:25:39,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:26:18] 2025-11-27 01:25:39,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:26:18] 2025-11-27 01:26:08,675 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:26:18] 2025-11-27 01:26:10,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149439567680)>', '<ExcThread(monitor, started 140149157496576)>']
[2025-11-26 20:26:18] 2025-11-27 01:26:10,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:26:18] 2025-11-27 01:26:10,069 | INFO     | [monitor] control thread has ended
[2025-11-26 20:26:18] 2025-11-27 01:26:15,029 | INFO     | all workflow threads have been joined
[2025-11-26 20:26:18] 2025-11-27 01:26:15,029 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:26:18] 2025-11-27 01:26:15,029 | INFO     | traces error code: 0
[2025-11-26 20:26:18] 2025-11-27 01:26:15,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:26:18] 2025-11-27 01:26:16,292 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:26:18] 2025-11-27 01:26:16,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:26:18] 2025-11-27 01:26:16,327 [wrapper] pilotpid: 1509910
[2025-11-26 20:26:18] 2025-11-27 01:26:16,336 [wrapper] Pilot exit status: 0
[2025-11-26 20:26:18] 2025-11-27 01:26:16,463 [wrapper] pandaids: 6895367212
[2025-11-26 20:26:18] 2025-11-27 01:26:16,943 [wrapper] cleanup supervisor_pilot 1564679 1509911
[2025-11-26 20:26:18] 2025-11-27 01:26:16,969 [wrapper] Test setup, not cleaning
[2025-11-26 20:26:18] 2025-11-27 01:26:17,001 [wrapper] apfmon messages muted
[2025-11-26 20:26:18] 2025-11-27 01:26:17,021 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:26:18] 2025-11-27 01:26:17,083 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:26:18]  *** Error codes and diagnostics ***
[2025-11-26 20:26:18]     "exeErrorCode": 0,
[2025-11-26 20:26:18]     "exeErrorDiag": "",
[2025-11-26 20:26:18]     "pilotErrorCode": 0,
[2025-11-26 20:26:18]     "pilotErrorDiag": "",
[2025-11-26 20:26:18]  *** Listing of results directory ***
[2025-11-26 20:26:18] total 1353528
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-26 20:26:18] -rwx------. 1 boincer umatlas     36292 Nov 23 14:06 runpilot2-wrapper.sh
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:06 queuedata.json
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas       100 Nov 24 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:26:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 22:56 run_atlas
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas       105 Nov 24 22:56 job.xml
[2025-11-26 20:26:18] -rw-r--r--. 2 boincer umatlas 409060605 Nov 24 22:56 EVNT.47483658._000859.pool.root.1
[2025-11-26 20:26:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 22:56 start_atlas.sh
[2025-11-26 20:26:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 22:56 shared
[2025-11-26 20:26:18] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 22:56 input.tar.gz
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas         0 Nov 24 22:56 boinc_lockfile
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 22:56 pandaJob.out
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas        57 Nov 24 22:56 setup.sh.local
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas    991801 Nov 24 22:57 agis_schedconf.cvmfs.json
[2025-11-26 20:26:18] drwx------. 5 boincer umatlas      4096 Nov 24 22:57 pilot3
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas       534 Nov 26 19:38 boinc_task_state.xml
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 20:19 init_data.xml
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas 925887621 Nov 26 20:22 HITS.47556137._008452.pool.root.1
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas      1065 Nov 26 20:24 memory_monitor_summary.json
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas   3325562 Nov 26 20:24 log.47556137._008452.job.log.tgz.1
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas        95 Nov 26 20:25 pilot_heartbeat.json
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas      8625 Nov 26 20:25 heartbeat.json
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:26 boinc_mmap_file
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:26 wrapper_checkpoint.txt
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas      4824 Nov 26 20:26 pilotlog.txt
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas  20250541 Nov 26 20:26 log.47556137._008452.job.log.1
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas       353 Nov 26 20:26 output.list
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:26 runtime_log
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas  23592960 Nov 26 20:26 result.tar.gz
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 20:26 runtime_log.err
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas       665 Nov 26 20:26 5AnLDmbaUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLhIKDmhxkaJo.diag
[2025-11-26 20:26:18] -rw-r--r--. 1 boincer umatlas     21897 Nov 26 20:26 stderr.txt
[2025-11-26 20:26:18] HITS file was successfully produced:
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas 925887621 Nov 26 20:22 shared/HITS.pool.root.1
[2025-11-26 20:26:18]  *** Contents of shared directory: ***
[2025-11-26 20:26:18] total 1327304
[2025-11-26 20:26:18] -rw-r--r--. 2 boincer umatlas 409060605 Nov 24 22:56 ATLAS.root_0
[2025-11-26 20:26:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 22:56 start_atlas.sh
[2025-11-26 20:26:18] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 22:56 input.tar.gz
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas 925887621 Nov 26 20:22 HITS.pool.root.1
[2025-11-26 20:26:18] -rw-------. 1 boincer umatlas  23592960 Nov 26 20:26 result.tar.gz
20:26:40 (1504352): run_atlas exited; CPU time 254088.942857
20:26:40 (1504352): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN