Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 09:56:04 (23846): vboxwrapper version 26210
2025-11-25 09:56:04 (23846): BOINC client version: 7.24.1
2025-11-25 09:56:04 (23846): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-11-25 09:56:04 (23846): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 09:56:04 (23846): Create VM. (boinc_3382e77dd995a189, slot#3)
2025-11-25 09:56:05 (23846): Setting Memory Size for VM. (4800MB)
2025-11-25 09:56:05 (23846): Setting CPU Count for VM. (8)
2025-11-25 09:56:05 (23846): Setting Chipset Options for VM.
2025-11-25 09:56:05 (23846): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 09:56:05 (23846): Setting Boot Options for VM.
2025-11-25 09:56:05 (23846): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 09:56:05 (23846): Enabling VM Network Access.
2025-11-25 09:56:05 (23846): Disabling USB Support for VM.
2025-11-25 09:56:05 (23846): Disabling COM Port Support for VM.
2025-11-25 09:56:05 (23846): Disabling LPT Port Support for VM.
2025-11-25 09:56:05 (23846): Disabling Audio Support for VM.
2025-11-25 09:56:05 (23846): Disabling Clipboard Support for VM.
2025-11-25 09:56:05 (23846): Disabling Drag and Drop Support for VM.
2025-11-25 09:56:05 (23846): Adding storage controller(s) to VM.
2025-11-25 09:56:06 (23846): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 09:56:06 (23846): Adding VirtualBox Guest Additions to VM.
2025-11-25 09:56:06 (23846): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 09:56:06 (23846): forwarding host port 53577 to guest port 80
2025-11-25 09:56:06 (23846): Enabling remote desktop for VM.
2025-11-25 09:56:06 (23846): Enabling shared directory for VM.
2025-11-25 09:56:06 (23846): Starting VM using VBoxManage interface. (boinc_3382e77dd995a189, slot#3)
2025-11-25 09:56:08 (23846): Successfully started VM. (PID = '24355')
2025-11-25 09:56:08 (23846): Reporting VM Process ID to BOINC.
2025-11-25 09:56:08 (23846): Guest Log: BIOS: VirtualBox 7.0.16
2025-11-25 09:56:08 (23846): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 09:56:08 (23846): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 09:56:08 (23846): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 09:56:08 (23846): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 09:56:08 (23846): Detected: Web Application Enabled (http://localhost:53577)
2025-11-25 09:56:08 (23846): Detected: Remote Desktop Enabled (localhost:53583)
2025-11-25 09:56:08 (23846): Preference change detected
2025-11-25 09:56:08 (23846): Setting CPU throttle for VM. (100%)
2025-11-25 09:56:08 (23846): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 09:56:10 (23846): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 09:56:10 (23846): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 09:56:12 (23846): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 09:56:12 (23846): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 09:56:12 (23846): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 09:56:18 (23846): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 09:56:18 (23846): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 09:56:21 (23846): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000207 main     Log opened 2025-11-25T07:56:19.788973000Z
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000363 main     OS Product: Linux
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000390 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000412 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000471 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000471 main     Process ID: 1371
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000472 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 09:56:21 (23846): Guest Log: 00:00:00.000997 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 09:56:22 (23846): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 09:56:22 (23846): Guest Log: [INFO] Mounting shared directory
2025-11-25 09:56:22 (23846): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 09:56:24 (23846): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 09:56:24 (23846): Guest Log: [INFO] Detected branch: prod
2025-11-25 09:56:24 (23846): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 09:56:24 (23846): Guest Log: Copying input files
2025-11-25 09:56:25 (23846): Guest Log: Copied input files into RunAtlas.
2025-11-25 09:56:25 (23846): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-11-25 09:56:32 (23846): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 09:56:32 (23846): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 09:56:32 (23846): Guest Log: 2.6.3.0 1648 0 31620 153275 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-11-25 09:56:33 (23846): Guest Log: copied the webapp to /var/www
2025-11-25 09:56:33 (23846): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 09:56:33 (23846): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 09:56:33 (23846): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 09:56:33 (23846): Guest Log:  *** Starting ATLAS job. (PandaID=6895366953 taskID=47556137) ***
2025-11-25 10:40:52 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 10:41:12 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 11:35:29 (23846): Status Report: Elapsed Time: '6000.000000'
2025-11-25 11:35:29 (23846): Status Report: CPU Time: '45400.680000'
2025-11-25 11:37:50 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 11:38:09 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 11:42:10 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 11:42:30 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 11:55:52 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 11:56:13 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 12:55:51 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 12:56:11 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 13:15:54 (23846): Status Report: Elapsed Time: '12000.000000'
2025-11-25 13:15:54 (23846): Status Report: CPU Time: '92881.520000'
2025-11-25 13:53:37 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 13:53:57 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 13:55:27 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 13:55:47 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 14:09:49 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 14:10:09 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 14:55:57 (23846): Status Report: Elapsed Time: '18000.000000'
2025-11-25 14:55:57 (23846): Status Report: CPU Time: '140452.590000'
2025-11-25 15:09:38 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 15:09:57 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 16:08:15 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 16:08:36 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 16:11:25 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 16:11:46 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 16:23:27 (23846): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 16:23:47 (23846): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 16:36:22 (23846): Status Report: Elapsed Time: '24000.000000'
2025-11-25 16:36:22 (23846): Status Report: CPU Time: '180499.560000'
2025-11-25 16:54:15 (23846): Guest Log:  *** Job finished ***
2025-11-25 16:54:15 (23846): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:17,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:17,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:19,262 | INFO     | [monitor] cgroup control has ended
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:19,512 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012774315840)>', '<ExcThread(monitor, started 140011840206592)>']
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:20,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:20,078 | INFO     | [monitor] control thread has ended
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,517 | INFO     | all workflow threads have been joined
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,517 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,517 | INFO     | traces error code: 0
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,610 [wrapper] ==== pilot stdout END ====
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,614 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,620 [wrapper] pilotpid: 6070
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,624 [wrapper] Pilot exit status: 0
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,641 [wrapper] pandaids: 6895366953
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,666 [wrapper] cleanup supervisor_pilot 31714 6071
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,677 [wrapper] Test setup, not cleaning
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,682 [wrapper] apfmon messages muted
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,688 [wrapper] ==== wrapper stdout END ====
2025-11-25 16:54:15 (23846): Guest Log: 2025-11-25 14:50:24,698 [wrapper] ==== wrapper stderr END ====
2025-11-25 16:54:15 (23846): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 16:54:15 (23846): Guest Log:     "exeErrorCode": 0,
2025-11-25 16:54:15 (23846): Guest Log:     "exeErrorDiag": "",
2025-11-25 16:54:15 (23846): Guest Log:     "pilotErrorCode": 1315,
2025-11-25 16:54:15 (23846): Guest Log:     "pilotErrorDiag": "Unknown transform failure:PyJobTransforms.trfDecorators.exception_wrapper  CRITICAL Got a general exception in the outer exception handler: No module named trfValidateRootFile",
2025-11-25 16:54:15 (23846): Guest Log:  *** Listing of results directory ***
2025-11-25 16:54:15 (23846): Guest Log: total 12036
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 23 18:33 pilot3.tar.gz
2025-11-25 16:54:15 (23846): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 23 18:55 runpilot2-wrapper.sh
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 23 18:55 queuedata.json
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas   15847 Nov 25 07:56 start_atlas.sh
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas  590104 Nov 25 07:56 input.tar.gz
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas    6962 Nov 25 07:56 init_data.xml
2025-11-25 16:54:15 (23846): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 25 07:56 EVNT.47483658._000853.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas    2785 Nov 25 07:56 pandaJob.out
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas      69 Nov 25 07:56 setup.sh.local
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas  991830 Nov 25 07:56 agis_schedconf.cvmfs.json
2025-11-25 16:54:15 (23846): Guest Log: drwx------. 5 atlas atlas    4096 Nov 25 07:56 pilot3
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas    1042 Nov 25 14:26 memory_monitor_summary.json
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas 1679539 Nov 25 14:29 log.47556137._008396.job.log.tgz.1
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas       0 Nov 25 14:33 agis_ddmendpoints.agis.ALL.json
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas      95 Nov 25 14:49 pilot_heartbeat.json
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas    2933 Nov 25 14:49 heartbeat.json
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas    4805 Nov 25 14:50 pilotlog.txt
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas 3327460 Nov 25 14:50 log.47556137._008396.job.log.1
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas     186 Nov 25 14:50 output.list
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 25 14:50 runtime_log
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas 5017600 Nov 25 14:50 result.tar.gz
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 atlas atlas    9155 Nov 25 14:50 runtime_log.err
2025-11-25 16:54:15 (23846): Guest Log: -rw-------. 1 atlas atlas     652 Nov 25 14:50 8lpKDmlQUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3gIKDmwPEypn.diag
2025-11-25 16:54:15 (23846): Guest Log: Looking for outputfile HITS.47556137._008396.pool.root.1
2025-11-25 16:54:15 (23846): Guest Log: No HITS file was produced
2025-11-25 16:54:15 (23846): Guest Log: Successfully finished the ATLAS job!
2025-11-25 16:54:15 (23846): Guest Log: Copying the results back to the shared directory!
2025-11-25 16:54:15 (23846): Guest Log:  *** Contents of shared directory: ***
2025-11-25 16:54:15 (23846): Guest Log: total 399834
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 root root 408565646 Nov 25 07:56 ATLAS.root_0
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 root root      6962 Nov 25 07:56 init_data.xml
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 root root    590104 Nov 25 07:56 input.tar.gz
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 root root   5017600 Nov 25  2025 result.tar.gz
2025-11-25 16:54:15 (23846): Guest Log: -rw-r--r--. 1 root root     15847 Nov 25 07:56 start_atlas.sh
2025-11-25 16:54:15 (23846): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 16:54:15 (23846): VM Completion File Detected.
2025-11-25 16:54:15 (23846): Powering off VM.
2025-11-25 16:54:15 (23846): Successfully stopped VM.
2025-11-25 16:54:15 (23846): Deregistering VM. (boinc_3382e77dd995a189, slot#3)
2025-11-25 16:54:15 (23846): Removing network bandwidth throttle group from VM.
2025-11-25 16:54:16 (23846): Removing VM from VirtualBox.
2025-11-25 16:54:21 (23846): called boinc_finish(0)

</stderr_txt>
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