Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:30:51 (3842087): wrapper (7.7.26015): starting
14:30:51 (3842087): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:30:51] Arguments: --nthreads 8
[2025-11-24 14:30:51] Threads: 8
[2025-11-24 14:30:51] Checking for CVMFS
[2025-11-24 14:30:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:30:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:30:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:30:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:30:55] 2.13.3.0 11250 27592 325876 153257 1 160 26510813 32935937 15984 16776704 0 91230990 99.482 122723900 40069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 14:30:55] CVMFS is ok
[2025-11-24 14:30:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:30:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:30:55] Further information can be found at the LHC@home message board.
[2025-11-24 14:30:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:30:55] Checking for apptainer binary...
[2025-11-24 14:30:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:30:55] Running /usr/bin/apptainer --version
[2025-11-24 14:30:55] apptainer version 1.4.4-1.el9
[2025-11-24 14:30:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:30:57] c6-2-29-1.aglt2.org
[2025-11-24 14:30:57] apptainer works
[2025-11-24 14:30:57] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:30:57] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:30:57] Starting ATLAS job with PandaID=6895366925
[2025-11-24 14:30:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:17:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:17:39] 2025-11-25 20:16:21,831 | INFO     | time since job start (89011s) is within the limit (172800.0s)
[2025-11-25 15:17:39] 2025-11-25 20:16:22,106 | INFO     | monitor loop #5363: job 0:6895366925 is in state 'finished'
[2025-11-25 15:17:39] 2025-11-25 20:16:22,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:17:39] 2025-11-25 20:16:23,838 | INFO     | time since job start (89013s) is within the limit (172800.0s)
[2025-11-25 15:17:39] 2025-11-25 20:16:24,611 | INFO     | monitor loop #5364: job 0:6895366925 is in state 'finished'
[2025-11-25 15:17:39] 2025-11-25 20:16:24,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:17:39] 2025-11-25 20:16:26,086 | INFO     | PID=3846820 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:17:39] 2025-11-25 20:16:26,086 | INFO     | .. there are 17 such processes running
[2025-11-25 15:17:39] 2025-11-25 20:16:27,087 | INFO     | time since job start (89017s) is within the limit (172800.0s)
[2025-11-25 15:17:39] 2025-11-25 20:16:27,120 | INFO     | monitor loop #5365: job 0:6895366925 is in state 'finished'
[2025-11-25 15:17:39] 2025-11-25 20:16:27,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:17:39] 2025-11-25 20:16:29,117 | INFO     | time since job start (89019s) is within the limit (172800.0s)
[2025-11-25 15:17:39] 2025-11-25 20:16:29,626 | INFO     | monitor loop #5366: job 0:6895366925 is in state 'finished'
[2025-11-25 15:17:39] 2025-11-25 20:16:29,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:17:39] 2025-11-25 20:16:30,358 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 15:17:39] 2025-11-25 20:16:30,367 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2771.8652499999994
[2025-11-25 15:17:39] 2025-11-25 20:16:30,378 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895366925/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:17:39] 2025-11-25 20:16:30,379 | INFO     | extracted standard info from prmon json
[2025-11-25 15:17:39] 2025-11-25 20:16:30,379 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:17:39] 2025-11-25 20:16:30,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:17:39] 2025-11-25 20:16:30,400 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:17:39] 2025-11-25 20:16:30,402 | INFO     | sum of square deviations: 955113426559.4615
[2025-11-25 15:17:39] 2025-11-25 20:16:30,443 | INFO     | sum of deviations: 6347089015996.371
[2025-11-25 15:17:39] 2025-11-25 20:16:30,443 | INFO     | mean x: 1764057359.019244
[2025-11-25 15:17:39] 2025-11-25 20:16:30,443 | INFO     | mean y: 2891345.9512027493
[2025-11-25 15:17:39] 2025-11-25 20:16:30,443 | INFO     | intersect: -11719935258.37311
[2025-11-25 15:17:39] 2025-11-25 20:16:30,449 | INFO     | chi2: 21.62349273812846
[2025-11-25 15:17:39] 2025-11-25 20:16:30,451 | INFO     | sum of square deviations: 945301754481.2255
[2025-11-25 15:17:39] 2025-11-25 20:16:30,516 | INFO     | sum of deviations: 6880523411424.092
[2025-11-25 15:17:39] 2025-11-25 20:16:30,517 | INFO     | mean x: 1764057206.5296552
[2025-11-25 15:17:39] 2025-11-25 20:16:30,517 | INFO     | mean y: 2899634.5910344827
[2025-11-25 15:17:39] 2025-11-25 20:16:30,521 | INFO     | intersect: -12837060569.735172
[2025-11-25 15:17:39] 2025-11-25 20:16:30,523 | INFO     | chi2: 18.018173583233914
[2025-11-25 15:17:39] 2025-11-25 20:16:30,523 | INFO     | current chi2=18.018173583233914 (change=16.673158210640626 %)
[2025-11-25 15:17:39] 2025-11-25 20:16:30,523 | INFO     | right removable region: 1449
[2025-11-25 15:17:39] 2025-11-25 20:16:30,525 | INFO     | sum of square deviations: 945299074751.2249
[2025-11-25 15:17:39] 2025-11-25 20:16:30,662 | INFO     | sum of deviations: 5720272738586.996
[2025-11-25 15:17:39] 2025-11-25 20:16:30,663 | INFO     | mean x: 1764057511.5296552
[2025-11-25 15:17:39] 2025-11-25 20:16:30,663 | INFO     | mean y: 2901085.9882758623
[2025-11-25 15:17:39] 2025-11-25 20:16:30,663 | INFO     | intersect: -10671911110.520359
[2025-11-25 15:17:39] 2025-11-25 20:16:30,668 | INFO     | chi2: 16.661928409085018
[2025-11-25 15:17:39] 2025-11-25 20:16:30,669 | INFO     | current chi2=16.661928409085018 (change=22.945249359715003 %)
[2025-11-25 15:17:39] 2025-11-25 20:16:30,669 | INFO     | left removable region: 10
[2025-11-25 15:17:39] 2025-11-25 20:16:30,671 | INFO     | sum of square deviations: 923947964612.1951
[2025-11-25 15:17:39] 2025-11-25 20:16:30,732 | INFO     | sum of deviations: 5790669335922.809
[2025-11-25 15:17:39] 2025-11-25 20:16:30,733 | INFO     | mean x: 1764057481.0514245
[2025-11-25 15:17:39] 2025-11-25 20:16:30,737 | INFO     | mean y: 2919545.043085476
[2025-11-25 15:17:39] 2025-11-25 20:16:30,737 | INFO     | intersect: -11052977489.826456
[2025-11-25 15:17:39] 2025-11-25 20:16:30,739 | INFO     | chi2: 8.7634953426545
[2025-11-25 15:17:39] 2025-11-25 20:16:30,739 | INFO     | current memory leak: 6.27 B/s (using 1439 data points, chi2=8.76)
[2025-11-25 15:17:39] 2025-11-25 20:16:30,741 | INFO     | could have reported an average CPU frequency of 2781 MHz (52 samples)
[2025-11-25 15:17:39] 2025-11-25 20:16:30,745 | INFO     | ..............................
[2025-11-25 15:17:39] 2025-11-25 20:16:30,745 | INFO     | . Timing measurements:
[2025-11-25 15:17:39] 2025-11-25 20:16:30,745 | INFO     | . get job = 1 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | . initial setup = 11 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | . payload setup = 76 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | . stage-in = 0 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | . payload execution = 88784 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | . stage-out = 9 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | . log creation = 2 s
[2025-11-25 15:17:39] 2025-11-25 20:16:30,746 | INFO     | ..............................
[2025-11-25 15:17:39] 2025-11-25 20:16:31,124 | INFO     | time since job start (89021s) is within the limit (172800.0s)
[2025-11-25 15:17:39] 2025-11-25 20:16:31,204 | INFO     | 
[2025-11-25 15:17:39] 2025-11-25 20:16:31,204 | INFO     | job summary report
[2025-11-25 15:17:39] 2025-11-25 20:16:31,204 | INFO     | --------------------------------------------------
[2025-11-25 15:17:39] 2025-11-25 20:16:31,204 | INFO     | PanDA job id: 6895366925
[2025-11-25 15:17:39] 2025-11-25 20:16:31,204 | INFO     | task id: 47556137
[2025-11-25 15:17:39] 2025-11-25 20:16:31,204 | INFO     | errors: (none)
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | pilot state: finished 
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | transexitcode: 0
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | exeerrorcode: 0
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | exeerrordiag: 
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | exitcode: 0
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | exitmsg: OK
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | cpuconsumptiontime: 242326 s
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | nevents: 1000
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | neventsw: 0
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | pid: 3858026
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | pgrp: 3858026
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | corecount: 8
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | event service: False
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | sizes: {0: 2284083, 1: 2284167, 2: 2284338, 3: 2284394, 15: 2284394, 26: 2284422, 38: 2284578, 51: 2284606, 52: 2284896, 62: 2284924, 88862: 2350846, 88872: 235984
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | --------------------------------------------------
[2025-11-25 15:17:39] 2025-11-25 20:16:31,205 | INFO     | 
[2025-11-25 15:17:39] 2025-11-25 20:16:31,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 15:17:39] 2025-11-25 20:16:31,273 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,274 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,275 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:17:39] 2025-11-25 20:16:31,276 | INFO     | job 6895366925 has completed (purged errors)
[2025-11-25 15:17:39] 2025-11-25 20:16:31,276 | INFO     | overall cleanup function is called
[2025-11-25 15:17:39] 2025-11-25 20:16:32,415 | INFO     | --- collectZombieJob: --- 10, [3858026]
[2025-11-25 15:17:39] 2025-11-25 20:16:32,415 | INFO     | zombie collector waiting for pid 3858026
[2025-11-25 15:17:39] 2025-11-25 20:16:32,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:17:39] 2025-11-25 20:16:32,415 | INFO     | collected zombie processes
[2025-11-25 15:17:39] 2025-11-25 20:16:32,415 | INFO     | will attempt to kill all subprocesses of pid=3858026
[2025-11-25 15:17:39] 2025-11-25 20:16:33,312 | INFO     | process IDs to be killed: [3858026] (in reverse order)
[2025-11-25 15:17:39] 2025-11-25 20:16:33,562 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:17:39] 2025-11-25 20:16:33,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:17:39] 2025-11-25 20:16:33,596 | INFO     | did not find any defunct processes belonging to 3858026
[2025-11-25 15:17:39] 2025-11-25 20:16:33,623 | INFO     | did not find any defunct processes belonging to 3858026
[2025-11-25 15:17:39] 2025-11-25 20:16:33,625 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:17:39] 2025-11-25 20:16:33,625 | INFO     | ready for new job
[2025-11-25 15:17:39] 2025-11-25 20:16:33,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:17:39] 2025-11-25 20:16:33,635 | INFO     | ***************************************
[2025-11-25 15:17:39] 2025-11-25 20:16:33,635 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:17:39] 2025-11-25 20:16:33,635 | INFO     | ***************************************
[2025-11-25 15:17:39] 2025-11-25 20:16:33,635 | INFO     | 
[2025-11-25 15:17:39] 2025-11-25 20:16:33,643 | INFO     | architecture information:
[2025-11-25 15:17:39] 2025-11-25 20:16:33,647 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:17:39] 2025-11-25 20:16:33,747 | INFO     | cat /etc/os-release:
[2025-11-25 15:17:39] NAME="CentOS Linux"
[2025-11-25 15:17:39] VERSION="7 (Core)"
[2025-11-25 15:17:39] ID="centos"
[2025-11-25 15:17:39] ID_LIKE="rhel fedora"
[2025-11-25 15:17:39] VERSION_ID="7"
[2025-11-25 15:17:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:17:39] ANSI_COLOR="0;31"
[2025-11-25 15:17:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:17:39] HOME_URL="https://www.centos.org/"
[2025-11-25 15:17:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:17:39] 
[2025-11-25 15:17:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:17:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:17:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:17:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:17:39] 
[2025-11-25 15:17:39] 2025-11-25 20:16:33,749 | INFO     | ***************************************
[2025-11-25 15:17:39] 2025-11-25 20:16:34,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 15:17:39] 2025-11-25 20:16:34,298 | INFO     | sufficient remaining disk space (72490156032 B)
[2025-11-25 15:17:39] 2025-11-25 20:16:34,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:17:39] 2025-11-25 20:16:34,298 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:17:39] 2025-11-25 20:16:34,298 | INFO     | update_server=False
[2025-11-25 15:17:39] 2025-11-25 20:16:34,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:17:39] 2025-11-25 20:16:34,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:17:39] 2025-11-25 20:16:34,646 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:17:39] 2025-11-25 20:16:34,646 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:17:39] 2025-11-25 20:16:34,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:17:39] 2025-11-25 20:16:34,647 | INFO     | will abort loop
[2025-11-25 15:17:39] 2025-11-25 20:16:34,779 | INFO     | all job control threads have been joined
[2025-11-25 15:17:39] 2025-11-25 20:16:34,858 | INFO     | all payload control threads have been joined
[2025-11-25 15:17:39] 2025-11-25 20:16:35,304 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,337 | INFO     | all data control threads have been joined
[2025-11-25 15:17:39] 2025-11-25 20:16:35,341 | INFO     | [job] validate thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,357 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,657 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,785 | INFO     | [job] control thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,791 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,864 | INFO     | [payload] control thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:35,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:36,001 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:36,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:17:39] 2025-11-25 20:16:36,090 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:36,306 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:36,343 | INFO     | [data] control thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:36,401 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:36,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:17:39] 2025-11-25 20:16:36,528 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:37,047 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:16:40,539 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:17:39] 2025-11-25 20:17:05,587 | INFO     | PID=3846820 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:17:39] 2025-11-25 20:17:05,587 | INFO     | .. there are 17 such processes running
[2025-11-25 15:17:39] 2025-11-25 20:17:05,588 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:17:39] 2025-11-25 20:17:05,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:17:39] 2025-11-25 20:17:05,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:17:39] 2025-11-25 20:17:31,674 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:17:39] 2025-11-25 20:17:33,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712455333696)>', '<ExcThread(monitor, started 139712081663744)>']
[2025-11-25 15:17:39] 2025-11-25 20:17:33,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:17:39] 2025-11-25 20:17:33,764 | INFO     | [monitor] control thread has ended
[2025-11-25 15:17:39] 2025-11-25 20:17:38,088 | INFO     | all workflow threads have been joined
[2025-11-25 15:17:39] 2025-11-25 20:17:38,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:17:39] 2025-11-25 20:17:38,089 | INFO     | traces error code: 0
[2025-11-25 15:17:39] 2025-11-25 20:17:38,089 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:17:39] 2025-11-25 20:17:38,377 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:17:39] 2025-11-25 20:17:38,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:17:39] 2025-11-25 20:17:38,383 [wrapper] pilotpid: 3846820
[2025-11-25 15:17:39] 2025-11-25 20:17:38,385 [wrapper] Pilot exit status: 0
[2025-11-25 15:17:39] 2025-11-25 20:17:38,428 [wrapper] pandaids: 6895366925
[2025-11-25 15:17:39] 2025-11-25 20:17:38,500 [wrapper] cleanup supervisor_pilot 3039863 3846821
[2025-11-25 15:17:39] 2025-11-25 20:17:38,503 [wrapper] Test setup, not cleaning
[2025-11-25 15:17:39] 2025-11-25 20:17:38,506 [wrapper] apfmon messages muted
[2025-11-25 15:17:39] 2025-11-25 20:17:38,510 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:17:39] 2025-11-25 20:17:38,513 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:17:39]  *** Error codes and diagnostics ***
[2025-11-25 15:17:39]     "exeErrorCode": 0,
[2025-11-25 15:17:39]     "exeErrorDiag": "",
[2025-11-25 15:17:39]     "pilotErrorCode": 0,
[2025-11-25 15:17:39]     "pilotErrorDiag": "",
[2025-11-25 15:17:39]  *** Listing of results directory ***
[2025-11-25 15:17:39] total 1331720
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:33 pilot3.tar.gz
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 13:49 queuedata.json
[2025-11-25 15:17:39] -rwx------. 1 boincer umatlas     36292 Nov 23 13:49 runpilot2-wrapper.sh
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas       100 Nov 24 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:17:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 14:30 run_atlas
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas       105 Nov 24 14:30 job.xml
[2025-11-25 15:17:39] -rw-r--r--. 2 boincer umatlas 410496090 Nov 24 14:30 EVNT.47483658._000850.pool.root.1
[2025-11-25 15:17:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 14:30 start_atlas.sh
[2025-11-25 15:17:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 14:30 shared
[2025-11-25 15:17:39] -rw-r--r--. 2 boincer umatlas    590109 Nov 24 14:30 input.tar.gz
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas         0 Nov 24 14:30 boinc_lockfile
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 14:30 pandaJob.out
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas        57 Nov 24 14:30 setup.sh.local
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas    991801 Nov 24 14:32 agis_schedconf.cvmfs.json
[2025-11-25 15:17:39] drwx------. 5 boincer umatlas      4096 Nov 24 14:32 pilot3
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas       533 Nov 25 15:00 boinc_task_state.xml
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas 921756142 Nov 25 15:12 HITS.47556137._008368.pool.root.1
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas      6845 Nov 25 15:13 init_data.xml
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas      1056 Nov 25 15:15 memory_monitor_summary.json
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas   1516240 Nov 25 15:15 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas   2478267 Nov 25 15:15 log.47556137._008368.job.log.tgz.1
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas      8624 Nov 25 15:16 heartbeat.json
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas        95 Nov 25 15:17 pilot_heartbeat.json
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 15:17 boinc_mmap_file
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas        29 Nov 25 15:17 wrapper_checkpoint.txt
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas      5010 Nov 25 15:17 pilotlog.txt
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas  11275445 Nov 25 15:17 log.47556137._008368.job.log.1
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas       353 Nov 25 15:17 output.list
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas       620 Nov 25 15:17 runtime_log
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas  13772800 Nov 25 15:17 result.tar.gz
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 15:17 runtime_log.err
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas       661 Nov 25 15:17 kwsMDmpKUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmugIKDmVNlNSo.diag
[2025-11-25 15:17:39] -rw-r--r--. 1 boincer umatlas     21870 Nov 25 15:17 stderr.txt
[2025-11-25 15:17:39] HITS file was successfully produced:
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas 921756142 Nov 25 15:12 shared/HITS.pool.root.1
[2025-11-25 15:17:39]  *** Contents of shared directory: ***
[2025-11-25 15:17:39] total 1315084
[2025-11-25 15:17:39] -rw-r--r--. 2 boincer umatlas 410496090 Nov 24 14:30 ATLAS.root_0
[2025-11-25 15:17:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 14:30 start_atlas.sh
[2025-11-25 15:17:39] -rw-r--r--. 2 boincer umatlas    590109 Nov 24 14:30 input.tar.gz
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas 921756142 Nov 25 15:12 HITS.pool.root.1
[2025-11-25 15:17:39] -rw-------. 1 boincer umatlas  13772800 Nov 25 15:17 result.tar.gz
15:18:01 (3842087): run_atlas exited; CPU time 244280.467664
15:18:01 (3842087): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN