Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:28:12 (8365): wrapper (7.7.26015): starting
03:28:12 (8365): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:28:12] Arguments: --nthreads 8
[2025-11-27 03:28:12] Threads: 8
[2025-11-27 03:28:12] Checking for CVMFS
[2025-11-27 03:28:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:28:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:28:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:28:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:28:15] 2.11.2.0 3687 286245 138580 153343 1 84 14685196 25165825 1288 130560 10 146358155 99.883 77370096 2541 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 03:28:15] CVMFS is ok
[2025-11-27 03:28:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:28:15] Checking for apptainer binary...
[2025-11-27 03:28:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:28:15] Running /usr/bin/apptainer --version
[2025-11-27 03:28:15] apptainer version 1.3.2-1.el7
[2025-11-27 03:28:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:28:29] cg-vwn214.simple-grid.lan
[2025-11-27 03:28:29] apptainer works
[2025-11-27 03:28:29] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:28:29] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:28:29] Starting ATLAS job with PandaID=6895355955
[2025-11-27 03:28:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:01:58]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:01:58] 2025-11-28 02:00:40,700 | INFO     | PID=12173 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 03:01:58] 2025-11-28 02:00:40,700 | INFO     | .. there are 9 such processes running
[2025-11-28 03:01:58] 2025-11-28 02:00:41,700 | INFO     | time since job start (84501s) is within the limit (172800.0s)
[2025-11-28 03:01:58] 2025-11-28 02:00:41,986 | INFO     | monitor loop #5677: job 0:6895355955 is in state 'finished'
[2025-11-28 03:01:58] 2025-11-28 02:00:41,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:58] 2025-11-28 02:00:43,714 | INFO     | time since job start (84503s) is within the limit (172800.0s)
[2025-11-28 03:01:58] 2025-11-28 02:00:44,496 | INFO     | monitor loop #5678: job 0:6895355955 is in state 'finished'
[2025-11-28 03:01:58] 2025-11-28 02:00:44,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:58] 2025-11-28 02:00:45,722 | INFO     | time since job start (84505s) is within the limit (172800.0s)
[2025-11-28 03:01:58] 2025-11-28 02:00:47,003 | INFO     | monitor loop #5679: job 0:6895355955 is in state 'finished'
[2025-11-28 03:01:58] 2025-11-28 02:00:47,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:58] 2025-11-28 02:00:47,739 | INFO     | time since job start (84507s) is within the limit (172800.0s)
[2025-11-28 03:01:58] 2025-11-28 02:00:49,507 | INFO     | monitor loop #5680: job 0:6895355955 is in state 'finished'
[2025-11-28 03:01:58] 2025-11-28 02:00:49,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:58] 2025-11-28 02:00:49,747 | INFO     | time since job start (84509s) is within the limit (172800.0s)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,650 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:01:58] 2025-11-28 02:00:51,651 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 03:01:58] 2025-11-28 02:00:51,653 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6895355955/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,653 | INFO     | extracted standard info from prmon json
[2025-11-28 03:01:58] 2025-11-28 02:00:51,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:01:58] 2025-11-28 02:00:51,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:01:58] 2025-11-28 02:00:51,679 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:01:58] 2025-11-28 02:00:51,681 | INFO     | sum of square deviations: 807855203388.8832
[2025-11-28 03:01:58] 2025-11-28 02:00:51,738 | INFO     | sum of deviations: 3320814224687.513
[2025-11-28 03:01:58] 2025-11-28 02:00:51,739 | INFO     | mean x: 1764253210.5813954
[2025-11-28 03:01:58] 2025-11-28 02:00:51,739 | INFO     | mean y: 2827141.1918604653
[2025-11-28 03:01:58] 2025-11-28 02:00:51,739 | INFO     | intersect: -7249409562.950578
[2025-11-28 03:01:58] 2025-11-28 02:00:51,741 | INFO     | chi2: 26.56618562592485
[2025-11-28 03:01:58] 2025-11-28 02:00:51,743 | INFO     | sum of square deviations: 799081055493.015
[2025-11-28 03:01:58] 2025-11-28 02:00:51,778 | INFO     | time since job start (84511s) is within the limit (172800.0s)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,808 | INFO     | sum of deviations: 3792382185589.49
[2025-11-28 03:01:58] 2025-11-28 02:00:51,808 | INFO     | mean x: 1764253058.085339
[2025-11-28 03:01:58] 2025-11-28 02:00:51,808 | INFO     | mean y: 2835335.2436177973
[2025-11-28 03:01:58] 2025-11-28 02:00:51,808 | INFO     | intersect: -8370184926.420069
[2025-11-28 03:01:58] 2025-11-28 02:00:51,810 | INFO     | chi2: 23.08569131692523
[2025-11-28 03:01:58] 2025-11-28 02:00:51,810 | INFO     | current chi2=23.08569131692523 (change=13.101219565382943 %)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,810 | INFO     | right removable region: 1370
[2025-11-28 03:01:58] 2025-11-28 02:00:51,812 | INFO     | sum of square deviations: 799080147813.0142
[2025-11-28 03:01:58] 2025-11-28 02:00:51,881 | INFO     | sum of deviations: 2737166781028.508
[2025-11-28 03:01:58] 2025-11-28 02:00:51,882 | INFO     | mean x: 1764253363.085339
[2025-11-28 03:01:58] 2025-11-28 02:00:51,882 | INFO     | mean y: 2837284.1495258934
[2025-11-28 03:01:58] 2025-11-28 02:00:51,882 | INFO     | intersect: -6040430981.207284
[2025-11-28 03:01:58] 2025-11-28 02:00:51,884 | INFO     | chi2: 21.659277722916606
[2025-11-28 03:01:58] 2025-11-28 02:00:51,884 | INFO     | current chi2=21.659277722916606 (change=18.470502209469593 %)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,884 | INFO     | left removable region: 10
[2025-11-28 03:01:58] 2025-11-28 02:00:51,886 | INFO     | sum of square deviations: 780000252917.9526
[2025-11-28 03:01:58] 2025-11-28 02:00:51,941 | INFO     | sum of deviations: 2789448203997.596
[2025-11-28 03:01:58] 2025-11-28 02:00:51,942 | INFO     | mean x: 1764253332.5941176
[2025-11-28 03:01:58] 2025-11-28 02:00:51,942 | INFO     | mean y: 2856374.9485294116
[2025-11-28 03:01:58] 2025-11-28 02:00:51,942 | INFO     | intersect: -6306491951.018104
[2025-11-28 03:01:58] 2025-11-28 02:00:51,944 | INFO     | chi2: 13.66490014065779
[2025-11-28 03:01:58] 2025-11-28 02:00:51,944 | INFO     | current memory leak: 3.58 B/s (using 1360 data points, chi2=13.66)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,945 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 03:01:58] 2025-11-28 02:00:51,945 | INFO     | ..............................
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . Timing measurements:
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . get job = 0 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . initial setup = 8 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . payload setup = 167 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . stage-in = 0 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . payload execution = 84043 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . stage-out = 10 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | . log creation = 2 s
[2025-11-28 03:01:58] 2025-11-28 02:00:51,946 | INFO     | ..............................
[2025-11-28 03:01:58] 2025-11-28 02:00:52,076 | INFO     | 
[2025-11-28 03:01:58] 2025-11-28 02:00:52,076 | INFO     | job summary report
[2025-11-28 03:01:58] 2025-11-28 02:00:52,076 | INFO     | --------------------------------------------------
[2025-11-28 03:01:58] 2025-11-28 02:00:52,076 | INFO     | PanDA job id: 6895355955
[2025-11-28 03:01:58] 2025-11-28 02:00:52,076 | INFO     | task id: 47556137
[2025-11-28 03:01:58] 2025-11-28 02:00:52,076 | INFO     | errors: (none)
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | pilot state: finished 
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | transexitcode: 0
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | exeerrorcode: 0
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | exeerrordiag: 
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | exitcode: 0
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | exitmsg: OK
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | cpuconsumptiontime: 316067 s
[2025-11-28 03:01:58] 2025-11-28 02:00:52,077 | INFO     | nevents: 1000
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | neventsw: 0
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | pid: 18763
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | pgrp: 18763
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | corecount: 8
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | event service: False
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 24: 2284377, 35: 2284405, 45: 2284561, 56: 2284589, 67: 2284617, 78: 2284645, 88: 2284701, 99: 2285009, 10
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | --------------------------------------------------
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | 
[2025-11-28 03:01:58] 2025-11-28 02:00:52,078 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-28 03:01:58] 2025-11-28 02:00:52,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | job 6895355955 has completed (purged errors)
[2025-11-28 03:01:58] 2025-11-28 02:00:52,151 | INFO     | overall cleanup function is called
[2025-11-28 03:01:58] 2025-11-28 02:00:53,169 | INFO     | --- collectZombieJob: --- 10, [18763]
[2025-11-28 03:01:58] 2025-11-28 02:00:53,170 | INFO     | zombie collector waiting for pid 18763
[2025-11-28 03:01:58] 2025-11-28 02:00:53,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:01:58] 2025-11-28 02:00:53,170 | INFO     | collected zombie processes
[2025-11-28 03:01:58] 2025-11-28 02:00:53,170 | INFO     | will attempt to kill all subprocesses of pid=18763
[2025-11-28 03:01:58] 2025-11-28 02:00:53,288 | INFO     | process IDs to be killed: [18763] (in reverse order)
[2025-11-28 03:01:58] 2025-11-28 02:00:53,905 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:01:58] 2025-11-28 02:00:53,906 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:01:58] 2025-11-28 02:00:53,914 | INFO     | did not find any defunct processes belonging to 18763
[2025-11-28 03:01:58] 2025-11-28 02:00:53,917 | INFO     | did not find any defunct processes belonging to 18763
[2025-11-28 03:01:58] 2025-11-28 02:00:53,980 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:01:58] 2025-11-28 02:00:53,980 | INFO     | ready for new job
[2025-11-28 03:01:58] 2025-11-28 02:00:53,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:01:58] 2025-11-28 02:00:53,986 | INFO     | ***************************************
[2025-11-28 03:01:58] 2025-11-28 02:00:53,986 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:01:58] 2025-11-28 02:00:53,986 | INFO     | ***************************************
[2025-11-28 03:01:58] 2025-11-28 02:00:53,986 | INFO     | 
[2025-11-28 03:01:58] 2025-11-28 02:00:53,992 | INFO     | pilot is running in a VM
[2025-11-28 03:01:58] 2025-11-28 02:00:53,992 | INFO     | architecture information:
[2025-11-28 03:01:58] 2025-11-28 02:00:54,006 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:01:58] 2025-11-28 02:00:54,178 | INFO     | cat /etc/os-release:
[2025-11-28 03:01:58] NAME="CentOS Linux"
[2025-11-28 03:01:58] VERSION="7 (Core)"
[2025-11-28 03:01:58] ID="centos"
[2025-11-28 03:01:58] ID_LIKE="rhel fedora"
[2025-11-28 03:01:58] VERSION_ID="7"
[2025-11-28 03:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:01:58] ANSI_COLOR="0;31"
[2025-11-28 03:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:01:58] HOME_URL="https://www.centos.org/"
[2025-11-28 03:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:01:58] 
[2025-11-28 03:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:01:58] 
[2025-11-28 03:01:58] 2025-11-28 02:00:54,178 | INFO     | ***************************************
[2025-11-28 03:01:58] 2025-11-28 02:00:54,682 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-28 03:01:58] 2025-11-28 02:00:54,842 | INFO     | sufficient remaining disk space (495394488320 B)
[2025-11-28 03:01:58] 2025-11-28 02:00:54,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:01:58] 2025-11-28 02:00:54,843 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:01:58] 2025-11-28 02:00:54,843 | INFO     | update_server=False
[2025-11-28 03:01:58] 2025-11-28 02:00:54,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:01:58] 2025-11-28 02:00:55,109 | INFO     | all data control threads have been joined
[2025-11-28 03:01:58] 2025-11-28 02:00:55,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:01:58] 2025-11-28 02:00:55,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:01:58] 2025-11-28 02:00:55,533 | INFO     | aborting loop
[2025-11-28 03:01:58] 2025-11-28 02:00:55,849 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:55,888 | INFO     | [job] validate thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:55,927 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:01:58] 2025-11-28 02:00:56,115 | INFO     | [data] control thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,125 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,228 | INFO     | all job control threads have been joined
[2025-11-28 03:01:58] 2025-11-28 02:00:56,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,352 | INFO     | all payload control threads have been joined
[2025-11-28 03:01:58] 2025-11-28 02:00:56,379 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,465 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,539 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:56,981 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:57,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:01:58] 2025-11-28 02:00:57,235 | INFO     | [job] control thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:57,279 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:57,359 | INFO     | [payload] control thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:58,062 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:58,097 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:00:59,418 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:01:58] 2025-11-28 02:01:24,929 | INFO     | PID=12173 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 03:01:58] 2025-11-28 02:01:24,929 | INFO     | .. there are 9 such processes running
[2025-11-28 03:01:58] 2025-11-28 02:01:24,930 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:01:58] 2025-11-28 02:01:24,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:01:58] 2025-11-28 02:01:24,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:01:58] 2025-11-28 02:01:47,058 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:01:58] 2025-11-28 02:01:49,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721907029824)>', '<ExcThread(monitor, started 139721233647360)>']
[2025-11-28 03:01:58] 2025-11-28 02:01:49,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:01:58] 2025-11-28 02:01:49,073 | INFO     | [monitor] control thread has ended
[2025-11-28 03:01:58] 2025-11-28 02:01:54,043 | INFO     | all workflow threads have been joined
[2025-11-28 03:01:58] 2025-11-28 02:01:54,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:01:58] 2025-11-28 02:01:54,044 | INFO     | traces error code: 0
[2025-11-28 03:01:58] 2025-11-28 02:01:54,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:01:58] 2025-11-28 02:01:54,362 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:01:58] 2025-11-28 02:01:54,421 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:01:58] 2025-11-28 02:01:54,503 [wrapper] pilotpid: 12173
[2025-11-28 03:01:58] 2025-11-28 02:01:54,571 [wrapper] Pilot exit status: 0
[2025-11-28 03:01:58] 2025-11-28 02:01:54,943 [wrapper] pandaids: 6895355955
[2025-11-28 03:01:58] 2025-11-28 02:01:55,942 [wrapper] cleanup supervisor_pilot 21973 12174
[2025-11-28 03:01:58] 2025-11-28 02:01:55,988 [wrapper] Test setup, not cleaning
[2025-11-28 03:01:58] 2025-11-28 02:01:56,072 [wrapper] apfmon messages muted
[2025-11-28 03:01:58] 2025-11-28 02:01:56,150 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:01:58] 2025-11-28 02:01:56,224 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:01:58]  *** Error codes and diagnostics ***
[2025-11-28 03:01:58]     "exeErrorCode": 0,
[2025-11-28 03:01:58]     "exeErrorDiag": "",
[2025-11-28 03:01:58]     "pilotErrorCode": 0,
[2025-11-28 03:01:58]     "pilotErrorDiag": "",
[2025-11-28 03:01:58]  *** Listing of results directory ***
[2025-11-28 03:01:58] total 1328456
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc    576529 Nov 23 10:19 pilot3.tar.gz
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc      5112 Nov 23 10:26 queuedata.json
[2025-11-28 03:01:58] -rwx------. 1 boinc boinc     36292 Nov 23 10:27 runpilot2-wrapper.sh
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc       100 Nov 27 03:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:01:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 03:28 run_atlas
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc       105 Nov 27 03:28 job.xml
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc      6392 Nov 27 03:28 init_data.xml
[2025-11-28 03:01:58] -rw-r--r--. 2 boinc boinc 409110739 Nov 27 03:28 EVNT.47483658._000679.pool.root.1
[2025-11-28 03:01:58] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:28 start_atlas.sh
[2025-11-28 03:01:58] drwxrwx--x. 2 boinc boinc        68 Nov 27 03:28 shared
[2025-11-28 03:01:58] -rw-r--r--. 2 boinc boinc    590102 Nov 27 03:28 input.tar.gz
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc         0 Nov 27 03:28 boinc_lockfile
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc      2785 Nov 27 03:28 pandaJob.out
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc    991554 Nov 27 03:32 agis_schedconf.cvmfs.json
[2025-11-28 03:01:58] drwx------. 5 boinc boinc      4096 Nov 27 03:32 pilot3
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc       533 Nov 28 02:35 boinc_task_state.xml
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc 919879538 Nov 28 02:57 HITS.47556137._006750.pool.root.1
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc      1028 Nov 28 02:59 memory_monitor_summary.json
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc   1516240 Nov 28 02:59 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc   2458927 Nov 28 02:59 log.47556137._006750.job.log.tgz.1
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc        95 Nov 28 03:00 pilot_heartbeat.json
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc      8626 Nov 28 03:00 heartbeat.json
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc      8192 Nov 28 03:01 boinc_mmap_file
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc        29 Nov 28 03:01 wrapper_checkpoint.txt
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc      4885 Nov 28 03:01 pilotlog.txt
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc  11266656 Nov 28 03:01 log.47556137._006750.job.log.1
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc       353 Nov 28 03:01 output.list
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc       620 Nov 28 03:01 runtime_log
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc  13742080 Nov 28 03:01 result.tar.gz
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc      8833 Nov 28 03:01 runtime_log.err
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc       662 Nov 28 03:01 DmuNDmvYLh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2lKKDm3fRASo.diag
[2025-11-28 03:01:58] -rw-r--r--. 1 boinc boinc     21502 Nov 28 03:01 stderr.txt
[2025-11-28 03:01:58] HITS file was successfully produced:
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc 919879538 Nov 28 02:57 shared/HITS.pool.root.1
[2025-11-28 03:01:58]  *** Contents of shared directory: ***
[2025-11-28 03:01:58] total 1311860
[2025-11-28 03:01:58] -rw-r--r--. 2 boinc boinc 409110739 Nov 27 03:28 ATLAS.root_0
[2025-11-28 03:01:58] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:28 start_atlas.sh
[2025-11-28 03:01:58] -rw-r--r--. 2 boinc boinc    590102 Nov 27 03:28 input.tar.gz
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc 919879538 Nov 28 02:57 HITS.pool.root.1
[2025-11-28 03:01:58] -rw-------. 1 boinc boinc  13742080 Nov 28 03:01 result.tar.gz
03:01:59 (8365): run_atlas exited; CPU time 316670.575394
03:01:59 (8365): called boinc_finish(0)

</stderr_txt>
]]>

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