Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:38:18 (1884244): wrapper (7.7.26015): starting
05:38:18 (1884244): wrapper: running run_atlas (--nthreads 3)
[2025-11-29 05:38:18] Arguments: --nthreads 3
[2025-11-29 05:38:18] Threads: 3
[2025-11-29 05:38:18] Checking for CVMFS
[2025-11-29 05:38:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 05:38:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 05:38:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 05:38:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 05:38:19] 2.9.2.0 1572593 2349 74300 153430 3 81 34558025 36864001 0 130560 0 858023 99.979 87273 3538 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-29 05:38:19] CVMFS is ok
[2025-11-29 05:38:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 05:38:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 05:38:19] Further information can be found at the LHC@home message board.
[2025-11-29 05:38:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 05:38:19] Checking for apptainer binary...
[2025-11-29 05:38:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 05:38:19] Running /usr/bin/apptainer --version
[2025-11-29 05:38:19] apptainer version 1.4.1-1.1
[2025-11-29 05:38:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 05:38:19] thA385
[2025-11-29 05:38:19] apptainer works
[2025-11-29 05:38:19] Set ATHENA_PROC_NUMBER=3
[2025-11-29 05:38:19] Set ATHENA_CORE_NUMBER=3
[2025-11-29 05:38:19] Starting ATLAS job with PandaID=6895355941
[2025-11-29 05:38:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 13:48:08]  *** The last 200 lines of the pilot log: ***
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | INFO     | aborting loop
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 13:48:08] 2025-11-29 12:47:38,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 13:48:08] 2025-11-29 12:47:38,553 | INFO     | all job control threads have been joined
[2025-11-29 13:48:08] 2025-11-29 12:47:39,106 | INFO     | all payload control threads have been joined
[2025-11-29 13:48:08] 2025-11-29 12:47:39,192 | INFO     | all data control threads have been joined
[2025-11-29 13:48:08] 2025-11-29 12:47:39,341 | INFO     | [job] retrieve thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,341 | INFO     | [job] job monitor thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,342 | INFO     | [job] queue monitor thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,497 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,559 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,559 | INFO     | [job] control thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,637 | INFO     | [data] copytool_in thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,803 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:39,857 | INFO     | [payload] validate_post thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:40,112 | INFO     | [payload] control thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:40,197 | INFO     | [data] control thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:40,339 | INFO     | [data] copytool_out thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:40,475 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:40,586 | INFO     | [job] validate thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:40,761 | INFO     | [payload] failed_post thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:47:42,339 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 13:48:08] 2025-11-29 12:48:03,065 | INFO     | [monitor] cgroup control has ended
[2025-11-29 13:48:08] 2025-11-29 12:48:03,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586522257216)>', '<ExcThread(monitor, started 140586241722112)>']
[2025-11-29 13:48:08] 2025-11-29 12:48:04,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 13:48:08] 2025-11-29 12:48:04,474 | INFO     | [monitor] control thread has ended
[2025-11-29 13:48:08] 2025-11-29 12:48:08,531 | INFO     | all workflow threads have been joined
[2025-11-29 13:48:08] 2025-11-29 12:48:08,531 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 13:48:08] 2025-11-29 12:48:08,531 | INFO     | traces error code: 0
[2025-11-29 13:48:08] 2025-11-29 12:48:08,531 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 13:48:08] 2025-11-29 12:48:08,582 [wrapper] ==== pilot stdout END ====
[2025-11-29 13:48:08] 2025-11-29 12:48:08,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 13:48:08] 2025-11-29 12:48:08,587 [wrapper] pilotpid: 1887974
[2025-11-29 13:48:08] 2025-11-29 12:48:08,590 [wrapper] Pilot exit status: 0
[2025-11-29 13:48:08] 2025-11-29 12:48:08,597 [wrapper] pandaids: 6895355941
[2025-11-29 13:48:08] 2025-11-29 12:48:08,615 [wrapper] cleanup supervisor_pilot 1944747 1887975
[2025-11-29 13:48:08] 2025-11-29 12:48:08,617 [wrapper] Test setup, not cleaning
[2025-11-29 13:48:08] 2025-11-29 12:48:08,620 [wrapper] apfmon messages muted
[2025-11-29 13:48:08] 2025-11-29 12:48:08,622 [wrapper] ==== wrapper stdout END ====
[2025-11-29 13:48:08] 2025-11-29 12:48:08,625 [wrapper] ==== wrapper stderr END ====
[2025-11-29 13:48:08]  *** Error codes and diagnostics ***
[2025-11-29 13:48:08]     "exeErrorCode": 0,
[2025-11-29 13:48:08]     "exeErrorDiag": "",
[2025-11-29 13:48:08]     "pilotErrorCode": 0,
[2025-11-29 13:48:08]     "pilotErrorDiag": "",
[2025-11-29 13:48:08]  *** Listing of results directory ***
[2025-11-29 13:48:08] total 1323532
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc    576529 Nov 23 10:19 pilot3.tar.gz
[2025-11-29 13:48:08] -rwx------ 1 boinc boinc     36292 Nov 23 10:21 runpilot2-wrapper.sh
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc      5112 Nov 23 10:21 queuedata.json
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc       100 Nov 29 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 13:48:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 05:38 run_atlas
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc       105 Nov 29 05:38 job.xml
[2025-11-29 13:48:08] -rw-r--r-- 2 boinc boinc 410172421 Nov 29 05:38 EVNT.47483658._000678.pool.root.1
[2025-11-29 13:48:08] -rw-r--r-- 2 boinc boinc    590094 Nov 29 05:38 input.tar.gz
[2025-11-29 13:48:08] -rw-r--r-- 2 boinc boinc     15847 Nov 29 05:38 start_atlas.sh
[2025-11-29 13:48:08] drwxrwx--x 2 boinc boinc      4096 Nov 29 05:38 shared
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc         0 Nov 29 05:38 boinc_setup_complete
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc      6447 Nov 29 05:38 init_data.xml
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc         0 Nov 29 05:38 boinc_lockfile
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc      2786 Nov 29 05:38 pandaJob.out
[2025-11-29 13:48:08] -rw------- 1 boinc boinc    991834 Nov 29 05:38 agis_schedconf.cvmfs.json
[2025-11-29 13:48:08] drwx------ 5 boinc boinc      4096 Nov 29 05:38 pilot3
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc       531 Nov 29 13:44 boinc_task_state.xml
[2025-11-29 13:48:08] -rw------- 1 boinc boinc        95 Nov 29 13:46 pilot_heartbeat.json
[2025-11-29 13:48:08] -rw------- 1 boinc boinc 930613885 Nov 29 13:47 HITS.47556137._006736.pool.root.1
[2025-11-29 13:48:08] -rw------- 1 boinc boinc      1025 Nov 29 13:47 memory_monitor_summary.json
[2025-11-29 13:48:08] -rw------- 1 boinc boinc   1516240 Nov 29 13:47 agis_ddmendpoints.agis.ALL.json
[2025-11-29 13:48:08] -rw------- 1 boinc boinc   1171525 Nov 29 13:47 log.47556137._006736.job.log.tgz.1
[2025-11-29 13:48:08] -rw------- 1 boinc boinc      8551 Nov 29 13:47 heartbeat.json
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc      8192 Nov 29 13:47 boinc_mmap_file
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc        28 Nov 29 13:47 wrapper_checkpoint.txt
[2025-11-29 13:48:08] -rw------- 1 boinc boinc      4556 Nov 29 13:48 pilotlog.txt
[2025-11-29 13:48:08] -rw------- 1 boinc boinc   4132276 Nov 29 13:48 log.47556137._006736.job.log.1
[2025-11-29 13:48:08] -rw------- 1 boinc boinc       353 Nov 29 13:48 output.list
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc       620 Nov 29 13:48 runtime_log
[2025-11-29 13:48:08] -rw------- 1 boinc boinc   5324800 Nov 29 13:48 result.tar.gz
[2025-11-29 13:48:08] -rw------- 1 boinc boinc       666 Nov 29 13:48 sCRKDmpSLh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrlKKDmu8TJnn.diag
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc      8898 Nov 29 13:48 runtime_log.err
[2025-11-29 13:48:08] -rw-r--r-- 1 boinc boinc      6982 Nov 29 13:48 stderr.txt
[2025-11-29 13:48:08] HITS file was successfully produced:
[2025-11-29 13:48:08] -rw------- 1 boinc boinc 930613885 Nov 29 13:47 shared/HITS.pool.root.1
[2025-11-29 13:48:08]  *** Contents of shared directory: ***
[2025-11-29 13:48:08] total 1315168
[2025-11-29 13:48:08] -rw-r--r-- 2 boinc boinc 410172421 Nov 29 05:38 ATLAS.root_0
[2025-11-29 13:48:08] -rw-r--r-- 2 boinc boinc    590094 Nov 29 05:38 input.tar.gz
[2025-11-29 13:48:08] -rw-r--r-- 2 boinc boinc     15847 Nov 29 05:38 start_atlas.sh
[2025-11-29 13:48:08] -rw------- 1 boinc boinc 930613885 Nov 29 13:47 HITS.pool.root.1
[2025-11-29 13:48:08] -rw------- 1 boinc boinc   5324800 Nov 29 13:48 result.tar.gz
13:48:10 (1884244): run_atlas exited; CPU time 86679.987402
13:48:10 (1884244): called boinc_finish(0)

</stderr_txt>
]]>

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