Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:27:07 (28834): wrapper (7.7.26015): starting
05:27:07 (28834): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:27:07] Arguments: --nthreads 8
[2025-11-27 05:27:07] Threads: 8
[2025-11-27 05:27:07] Checking for CVMFS
[2025-11-27 05:27:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:27:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:27:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:27:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:27:10] 2.11.2.0 30456 286163 139736 153347 1 84 20268350 25165825 1294 130560 11 121235153 99.866 81571844 2739 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 05:27:10] CVMFS is ok
[2025-11-27 05:27:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:27:10] Checking for apptainer binary...
[2025-11-27 05:27:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:27:10] Running /usr/bin/apptainer --version
[2025-11-27 05:27:10] apptainer version 1.3.2-1.el7
[2025-11-27 05:27:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:27:21] cg-vwn385.simple-grid.lan
[2025-11-27 05:27:21] apptainer works
[2025-11-27 05:27:21] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:27:21] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:27:21] Starting ATLAS job with PandaID=6895365880
[2025-11-27 05:27:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:41:51]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:41:51] 2025-11-28 03:41:03,273 | INFO     | monitor loop #5602: job 0:6895365880 is in state 'finished'
[2025-11-28 04:41:51] 2025-11-28 03:41:03,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:41:51] 2025-11-28 03:41:03,404 | INFO     | time since job start (83410s) is within the limit (172800.0s)
[2025-11-28 04:41:51] 2025-11-28 03:41:05,413 | INFO     | time since job start (83412s) is within the limit (172800.0s)
[2025-11-28 04:41:51] 2025-11-28 03:41:05,790 | INFO     | monitor loop #5603: job 0:6895365880 is in state 'finished'
[2025-11-28 04:41:51] 2025-11-28 03:41:05,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:41:51] 2025-11-28 03:41:07,421 | INFO     | time since job start (83414s) is within the limit (172800.0s)
[2025-11-28 04:41:51] 2025-11-28 03:41:08,304 | INFO     | monitor loop #5604: job 0:6895365880 is in state 'finished'
[2025-11-28 04:41:51] 2025-11-28 03:41:08,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:41:51] 2025-11-28 03:41:09,428 | INFO     | time since job start (83416s) is within the limit (172800.0s)
[2025-11-28 04:41:51] 2025-11-28 03:41:10,808 | INFO     | monitor loop #5605: job 0:6895365880 is in state 'finished'
[2025-11-28 04:41:51] 2025-11-28 03:41:10,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:41:51] 2025-11-28 03:41:11,434 | INFO     | time since job start (83418s) is within the limit (172800.0s)
[2025-11-28 04:41:51] 2025-11-28 03:41:13,321 | INFO     | monitor loop #5606: job 0:6895365880 is in state 'finished'
[2025-11-28 04:41:51] 2025-11-28 03:41:13,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:41:51] 2025-11-28 03:41:13,441 | INFO     | time since job start (83420s) is within the limit (172800.0s)
[2025-11-28 04:41:51] 2025-11-28 03:41:13,949 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 04:41:51] 2025-11-28 03:41:13,950 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 04:41:51] 2025-11-28 03:41:13,952 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895365880/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 04:41:51] 2025-11-28 03:41:13,953 | INFO     | extracted standard info from prmon json
[2025-11-28 04:41:51] 2025-11-28 03:41:13,953 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:41:51] 2025-11-28 03:41:13,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:41:51] 2025-11-28 03:41:13,978 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:41:51] 2025-11-28 03:41:13,981 | INFO     | sum of square deviations: 776564287323.2261
[2025-11-28 04:41:51] 2025-11-28 03:41:14,053 | INFO     | sum of deviations: 2546738972277.736
[2025-11-28 04:41:51] 2025-11-28 03:41:14,053 | INFO     | mean x: 1764259738.5780559
[2025-11-28 04:41:51] 2025-11-28 03:41:14,054 | INFO     | mean y: 2836181.0449189986
[2025-11-28 04:41:51] 2025-11-28 03:41:14,054 | INFO     | intersect: -5783045434.686809
[2025-11-28 04:41:51] 2025-11-28 03:41:14,062 | INFO     | chi2: 21.605595495342776
[2025-11-28 04:41:51] 2025-11-28 03:41:14,065 | INFO     | sum of square deviations: 768018610809.893
[2025-11-28 04:41:51] 2025-11-28 03:41:14,122 | INFO     | sum of deviations: 2999062417900.4067
[2025-11-28 04:41:51] 2025-11-28 03:41:14,122 | INFO     | mean x: 1764259586.0820398
[2025-11-28 04:41:51] 2025-11-28 03:41:14,122 | INFO     | mean y: 2844252.239467849
[2025-11-28 04:41:51] 2025-11-28 03:41:14,122 | INFO     | intersect: -6886473982.457427
[2025-11-28 04:41:51] 2025-11-28 03:41:14,124 | INFO     | chi2: 18.328102532396436
[2025-11-28 04:41:51] 2025-11-28 03:41:14,124 | INFO     | current chi2=18.328102532396436 (change=15.169648823855953 %)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,124 | INFO     | right removable region: 1352
[2025-11-28 04:41:51] 2025-11-28 03:41:14,126 | INFO     | sum of square deviations: 768017717769.8932
[2025-11-28 04:41:51] 2025-11-28 03:41:14,182 | INFO     | sum of deviations: 1993862783706.7544
[2025-11-28 04:41:51] 2025-11-28 03:41:14,182 | INFO     | mean x: 1764259891.0820398
[2025-11-28 04:41:51] 2025-11-28 03:41:14,183 | INFO     | mean y: 2846045.4796747966
[2025-11-28 04:41:51] 2025-11-28 03:41:14,183 | INFO     | intersect: -4577376592.911269
[2025-11-28 04:41:51] 2025-11-28 03:41:14,184 | INFO     | chi2: 17.204946596974334
[2025-11-28 04:41:51] 2025-11-28 03:41:14,184 | INFO     | current chi2=17.204946596974334 (change=20.368098159187646 %)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,185 | INFO     | left removable region: 10
[2025-11-28 04:41:51] 2025-11-28 03:41:14,186 | INFO     | sum of square deviations: 749437527524.409
[2025-11-28 04:41:51] 2025-11-28 03:41:14,248 | INFO     | sum of deviations: 2085174417165.0012
[2025-11-28 04:41:51] 2025-11-28 03:41:14,248 | INFO     | mean x: 1764259860.590909
[2025-11-28 04:41:51] 2025-11-28 03:41:14,248 | INFO     | mean y: 2864668.9836065574
[2025-11-28 04:41:51] 2025-11-28 03:41:14,249 | INFO     | intersect: -4905869403.471068
[2025-11-28 04:41:51] 2025-11-28 03:41:14,250 | INFO     | chi2: 9.886342200763869
[2025-11-28 04:41:51] 2025-11-28 03:41:14,250 | INFO     | current memory leak: 2.78 B/s (using 1342 data points, chi2=9.89)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,252 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,252 | INFO     | ..............................
[2025-11-28 04:41:51] 2025-11-28 03:41:14,252 | INFO     | . Timing measurements:
[2025-11-28 04:41:51] 2025-11-28 03:41:14,252 | INFO     | . get job = 0 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | . initial setup = 7 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | . payload setup = 128 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | . stage-in = 0 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | . payload execution = 82983 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | . stage-out = 5 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | . log creation = 1 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,253 | INFO     | ..............................
[2025-11-28 04:41:51] 2025-11-28 03:41:14,380 | INFO     | 
[2025-11-28 04:41:51] 2025-11-28 03:41:14,380 | INFO     | job summary report
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | --------------------------------------------------
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | PanDA job id: 6895365880
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | task id: 47556137
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | errors: (none)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | pilot state: finished 
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | transexitcode: 0
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | exeerrorcode: 0
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | exeerrordiag: 
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | exitcode: 0
[2025-11-28 04:41:51] 2025-11-28 03:41:14,381 | INFO     | exitmsg: OK
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | cpuconsumptiontime: 312710 s
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | nevents: 1000
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | neventsw: 0
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | pid: 6877
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | pgrp: 6877
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | corecount: 8
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | event service: False
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 22: 2284371, 33: 2284399, 44: 2284455, 54: 2284611, 65: 2284639, 76: 2284667, 87: 2284723, 97: 2284751, 102: 2285321, 
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | --------------------------------------------------
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | 
[2025-11-28 04:41:51] 2025-11-28 03:41:14,382 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-28 04:41:51] 2025-11-28 03:41:14,764 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,764 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | job 6895365880 has completed (purged errors)
[2025-11-28 04:41:51] 2025-11-28 03:41:14,766 | INFO     | overall cleanup function is called
[2025-11-28 04:41:51] 2025-11-28 03:41:15,782 | INFO     | --- collectZombieJob: --- 10, [6877]
[2025-11-28 04:41:51] 2025-11-28 03:41:15,783 | INFO     | zombie collector waiting for pid 6877
[2025-11-28 04:41:51] 2025-11-28 03:41:15,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:41:51] 2025-11-28 03:41:15,783 | INFO     | collected zombie processes
[2025-11-28 04:41:51] 2025-11-28 03:41:15,783 | INFO     | will attempt to kill all subprocesses of pid=6877
[2025-11-28 04:41:51] 2025-11-28 03:41:15,906 | INFO     | process IDs to be killed: [6877] (in reverse order)
[2025-11-28 04:41:51] 2025-11-28 03:41:16,551 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:41:51] 2025-11-28 03:41:16,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:41:51] 2025-11-28 03:41:16,555 | INFO     | did not find any defunct processes belonging to 6877
[2025-11-28 04:41:51] 2025-11-28 03:41:16,558 | INFO     | did not find any defunct processes belonging to 6877
[2025-11-28 04:41:51] 2025-11-28 03:41:16,561 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:41:51] 2025-11-28 03:41:16,561 | INFO     | ready for new job
[2025-11-28 04:41:51] 2025-11-28 03:41:16,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:41:51] 2025-11-28 03:41:16,566 | INFO     | ***************************************
[2025-11-28 04:41:51] 2025-11-28 03:41:16,566 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:41:51] 2025-11-28 03:41:16,566 | INFO     | ***************************************
[2025-11-28 04:41:51] 2025-11-28 03:41:16,566 | INFO     | 
[2025-11-28 04:41:51] 2025-11-28 03:41:16,567 | INFO     | pilot is running in a VM
[2025-11-28 04:41:51] 2025-11-28 03:41:16,567 | INFO     | architecture information:
[2025-11-28 04:41:51] 2025-11-28 03:41:16,570 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:41:51] 2025-11-28 03:41:16,840 | INFO     | cat /etc/os-release:
[2025-11-28 04:41:51] NAME="CentOS Linux"
[2025-11-28 04:41:51] VERSION="7 (Core)"
[2025-11-28 04:41:51] ID="centos"
[2025-11-28 04:41:51] ID_LIKE="rhel fedora"
[2025-11-28 04:41:51] VERSION_ID="7"
[2025-11-28 04:41:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:41:51] ANSI_COLOR="0;31"
[2025-11-28 04:41:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:41:51] HOME_URL="https://www.centos.org/"
[2025-11-28 04:41:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:41:51] 
[2025-11-28 04:41:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:41:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:41:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:41:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:41:51] 
[2025-11-28 04:41:51] 2025-11-28 03:41:16,840 | INFO     | ***************************************
[2025-11-28 04:41:51] 2025-11-28 03:41:17,344 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-28 04:41:51] 2025-11-28 03:41:17,665 | INFO     | sufficient remaining disk space (495528706048 B)
[2025-11-28 04:41:51] 2025-11-28 03:41:17,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:41:51] 2025-11-28 03:41:17,665 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:41:51] 2025-11-28 03:41:17,665 | INFO     | update_server=False
[2025-11-28 04:41:51] 2025-11-28 03:41:17,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:41:51] 2025-11-28 03:41:17,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:41:51] 2025-11-28 03:41:17,667 | INFO     | aborting loop
[2025-11-28 04:41:51] 2025-11-28 03:41:17,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:41:51] 2025-11-28 03:41:18,301 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:41:51] 2025-11-28 03:41:18,671 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:18,672 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:18,716 | INFO     | all data control threads have been joined
[2025-11-28 04:41:51] 2025-11-28 03:41:18,756 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:18,915 | INFO     | all payload control threads have been joined
[2025-11-28 04:41:51] 2025-11-28 03:41:19,188 | INFO     | all job control threads have been joined
[2025-11-28 04:41:51] 2025-11-28 03:41:19,221 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:41:51] 2025-11-28 03:41:19,526 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,675 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,722 | INFO     | [data] control thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,744 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:41:51] 2025-11-28 03:41:19,921 | INFO     | [payload] control thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:19,929 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:20,072 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:20,106 | INFO     | [job] validate thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:20,194 | INFO     | [job] control thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:20,403 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:23,818 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:41:51] 2025-11-28 03:41:24,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139861661894464)>', '<ExcThread(monitor, started 139861222737664)>']
[2025-11-28 04:41:51] 2025-11-28 03:41:29,586 | INFO     | all workflow threads have been joined
[2025-11-28 04:41:51] 2025-11-28 03:41:29,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:41:51] 2025-11-28 03:41:29,587 | INFO     | traces error code: 0
[2025-11-28 04:41:51] 2025-11-28 03:41:29,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:41:51] 2025-11-28 03:41:46,594 | INFO     | PID=32683 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 04:41:51] 2025-11-28 03:41:46,594 | INFO     | .. there are 9 such processes running
[2025-11-28 04:41:51] 2025-11-28 03:41:46,595 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:41:51] 2025-11-28 03:41:46,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:41:51] 2025-11-28 03:41:46,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:41:51] 2025-11-28 03:41:46,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:41:51] 2025-11-28 03:41:46,595 | INFO     | [monitor] control thread has ended
[2025-11-28 04:41:51] 2025-11-28 03:41:46,826 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:41:51] 2025-11-28 03:41:46,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:41:51] 2025-11-28 03:41:46,909 [wrapper] pilotpid: 32683
[2025-11-28 04:41:51] 2025-11-28 03:41:46,977 [wrapper] Pilot exit status: 0
[2025-11-28 04:41:51] 2025-11-28 03:41:47,347 [wrapper] pandaids: 6895365880
[2025-11-28 04:41:51] 2025-11-28 03:41:48,387 [wrapper] cleanup supervisor_pilot 24394 32684
[2025-11-28 04:41:51] 2025-11-28 03:41:48,488 [wrapper] Test setup, not cleaning
[2025-11-28 04:41:51] 2025-11-28 03:41:48,544 [wrapper] apfmon messages muted
[2025-11-28 04:41:51] 2025-11-28 03:41:48,638 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:41:51] 2025-11-28 03:41:48,707 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:41:51]  *** Error codes and diagnostics ***
[2025-11-28 04:41:51]     "exeErrorCode": 0,
[2025-11-28 04:41:51]     "exeErrorDiag": "",
[2025-11-28 04:41:51]     "pilotErrorCode": 0,
[2025-11-28 04:41:51]     "pilotErrorDiag": "",
[2025-11-28 04:41:51]  *** Listing of results directory ***
[2025-11-28 04:41:51] total 1318712
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:39 pilot3.tar.gz
[2025-11-28 04:41:51] -rwx------. 1 boinc boinc     36292 Nov 23 19:14 runpilot2-wrapper.sh
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc      5112 Nov 23 19:14 queuedata.json
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc       100 Nov 27 05:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:41:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 05:27 run_atlas
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc       105 Nov 27 05:27 job.xml
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc      6393 Nov 27 05:27 init_data.xml
[2025-11-28 04:41:51] -rw-r--r--. 2 boinc boinc 409196151 Nov 27 05:27 EVNT.47483658._000838.pool.root.1
[2025-11-28 04:41:51] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:27 start_atlas.sh
[2025-11-28 04:41:51] drwxrwx--x. 2 boinc boinc        68 Nov 27 05:27 shared
[2025-11-28 04:41:51] -rw-r--r--. 2 boinc boinc    590091 Nov 27 05:27 input.tar.gz
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc         0 Nov 27 05:27 boinc_lockfile
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc      2785 Nov 27 05:27 pandaJob.out
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc    991570 Nov 27 05:30 agis_schedconf.cvmfs.json
[2025-11-28 04:41:51] drwx------. 5 boinc boinc      4096 Nov 27 05:30 pilot3
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc       533 Nov 28 04:15 boinc_task_state.xml
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc 910182314 Nov 28 04:38 HITS.47556137._008243.pool.root.1
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc      1028 Nov 28 04:39 memory_monitor_summary.json
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc   1516240 Nov 28 04:39 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc   2444239 Nov 28 04:39 log.47556137._008243.job.log.tgz.1
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc      8627 Nov 28 04:41 heartbeat.json
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc      8192 Nov 28 04:41 boinc_mmap_file
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc        29 Nov 28 04:41 wrapper_checkpoint.txt
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc        95 Nov 28 04:41 pilot_heartbeat.json
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc       820 Nov 28 04:41 pilotlog.txt
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc  11096649 Nov 28 04:41 log.47556137._008243.job.log.1
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc       353 Nov 28 04:41 output.list
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc       620 Nov 28 04:41 runtime_log
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc  13557760 Nov 28 04:41 result.tar.gz
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc      8833 Nov 28 04:41 runtime_log.err
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc       662 Nov 28 04:41 aejLDmtmTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmt5KKDmKZkwkn.diag
[2025-11-28 04:41:51] -rw-r--r--. 1 boinc boinc     21439 Nov 28 04:41 stderr.txt
[2025-11-28 04:41:51] HITS file was successfully produced:
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc 910182314 Nov 28 04:38 shared/HITS.pool.root.1
[2025-11-28 04:41:51]  *** Contents of shared directory: ***
[2025-11-28 04:41:51] total 1302296
[2025-11-28 04:41:51] -rw-r--r--. 2 boinc boinc 409196151 Nov 27 05:27 ATLAS.root_0
[2025-11-28 04:41:51] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:27 start_atlas.sh
[2025-11-28 04:41:51] -rw-r--r--. 2 boinc boinc    590091 Nov 27 05:27 input.tar.gz
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc 910182314 Nov 28 04:38 HITS.pool.root.1
[2025-11-28 04:41:51] -rw-------. 1 boinc boinc  13557760 Nov 28 04:41 result.tar.gz
04:41:53 (28834): run_atlas exited; CPU time 313293.060399
04:41:53 (28834): called boinc_finish(0)

</stderr_txt>
]]>

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