Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
05:25:40 (1002211): wrapper (7.7.26015): starting
05:25:40 (1002211): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 05:25:40] Arguments: --nthreads 8
[2025-11-25 05:25:40] Threads: 8
[2025-11-25 05:25:40] Checking for CVMFS
[2025-11-25 05:25:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:25:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:25:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:25:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:25:41] 2.13.2.0 540105 3586 47732 153272 1 80 3082663 4096000 0 130560 0 1287154 99.980 124039 579 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 05:25:41] CVMFS is ok
[2025-11-25 05:25:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:25:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:25:41] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 05:25:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 05:25:41] Further information can be found at the LHC@home message board.
[2025-11-25 05:25:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:25:41] Checking for apptainer binary...
[2025-11-25 05:25:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:25:41] Running /usr/bin/apptainer --version
[2025-11-25 05:25:41] apptainer version 1.4.3
[2025-11-25 05:25:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:25:42] lab01ubuntu
[2025-11-25 05:25:42] apptainer works
[2025-11-25 05:25:42] Set ATHENA_PROC_NUMBER=8
[2025-11-25 05:25:42] Set ATHENA_CORE_NUMBER=8
[2025-11-25 05:25:42] Starting ATLAS job with PandaID=6891569387
[2025-11-25 05:25:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:24:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:24:19] 2025-11-25 15:23:21,583 | INFO     | monitor loop #2712: job 0:6891569387 is in state 'finished'
[2025-11-25 15:24:19] 2025-11-25 15:23:21,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:24:19] 2025-11-25 15:23:23,580 | INFO     | time since job start (35828s) is within the limit (172800.0s)
[2025-11-25 15:24:19] 2025-11-25 15:23:24,086 | INFO     | monitor loop #2713: job 0:6891569387 is in state 'finished'
[2025-11-25 15:24:19] 2025-11-25 15:23:24,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:24:19] 2025-11-25 15:23:25,587 | INFO     | time since job start (35830s) is within the limit (172800.0s)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,556 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 15:24:19] 2025-11-25 15:23:26,558 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2893.0279999999993
[2025-11-25 15:24:19] 2025-11-25 15:23:26,562 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6891569387/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,564 | INFO     | extracted standard info from prmon json
[2025-11-25 15:24:19] 2025-11-25 15:23:26,564 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:24:19] 2025-11-25 15:23:26,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:24:19] 2025-11-25 15:23:26,584 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:24:19] 2025-11-25 15:23:26,586 | INFO     | sum of square deviations: 62397904822.5
[2025-11-25 15:24:19] 2025-11-25 15:23:26,601 | INFO     | monitor loop #2714: job 0:6891569387 is in state 'finished'
[2025-11-25 15:24:19] 2025-11-25 15:23:26,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,604 | INFO     | sum of deviations: 672574652902.0001
[2025-11-25 15:24:19] 2025-11-25 15:23:26,605 | INFO     | mean x: 1764066277.5
[2025-11-25 15:24:19] 2025-11-25 15:23:26,605 | INFO     | mean y: 2864338.505119454
[2025-11-25 15:24:19] 2025-11-25 15:23:26,605 | INFO     | intersect: -19011656544.219444
[2025-11-25 15:24:19] 2025-11-25 15:23:26,607 | INFO     | chi2: 12.320624853191935
[2025-11-25 15:24:19] 2025-11-25 15:23:26,609 | INFO     | sum of square deviations: 60814275130.0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,625 | INFO     | sum of deviations: 857547778726.9988
[2025-11-25 15:24:19] 2025-11-25 15:23:26,626 | INFO     | mean x: 1764066125.0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,626 | INFO     | mean y: 2882156.7693631668
[2025-11-25 15:24:19] 2025-11-25 15:23:26,627 | INFO     | intersect: -24872379182.570953
[2025-11-25 15:24:19] 2025-11-25 15:23:26,628 | INFO     | chi2: 9.477557236643664
[2025-11-25 15:24:19] 2025-11-25 15:23:26,628 | INFO     | current chi2=9.477557236643664 (change=23.075677170802834 %)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,629 | INFO     | right removable region: 580
[2025-11-25 15:24:19] 2025-11-25 15:23:26,630 | INFO     | sum of square deviations: 60814275130.0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,646 | INFO     | sum of deviations: 458209826499.9999
[2025-11-25 15:24:19] 2025-11-25 15:23:26,647 | INFO     | mean x: 1764066430.0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,647 | INFO     | mean y: 2884971.5731497416
[2025-11-25 15:24:19] 2025-11-25 15:23:26,647 | INFO     | intersect: -13288609025.46751
[2025-11-25 15:24:19] 2025-11-25 15:23:26,649 | INFO     | chi2: 8.731093189123456
[2025-11-25 15:24:19] 2025-11-25 15:23:26,649 | INFO     | current chi2=8.731093189123456 (change=29.13433130900443 %)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,651 | INFO     | sum of square deviations: 59257669200.0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,667 | INFO     | sum of deviations: 292788297119.49976
[2025-11-25 15:24:19] 2025-11-25 15:23:26,667 | INFO     | mean x: 1764066582.5
[2025-11-25 15:24:19] 2025-11-25 15:23:26,667 | INFO     | mean y: 2901174.737847222
[2025-11-25 15:24:19] 2025-11-25 15:23:26,668 | INFO     | intersect: -8713237304.356949
[2025-11-25 15:24:19] 2025-11-25 15:23:26,669 | INFO     | chi2: 6.735495551105475
[2025-11-25 15:24:19] 2025-11-25 15:23:26,670 | INFO     | current chi2=6.735495551105475 (change=22.85621736925162 %)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,670 | INFO     | left removable region: 20
[2025-11-25 15:24:19] 2025-11-25 15:23:26,671 | INFO     | sum of square deviations: 54455421020.0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,686 | INFO     | sum of deviations: 366582604991.50006
[2025-11-25 15:24:19] 2025-11-25 15:23:26,687 | INFO     | mean x: 1764066704.5
[2025-11-25 15:24:19] 2025-11-25 15:23:26,687 | INFO     | mean y: 2940718.5660714284
[2025-11-25 15:24:19] 2025-11-25 15:23:26,687 | INFO     | intersect: -11872390622.21769
[2025-11-25 15:24:19] 2025-11-25 15:23:26,689 | INFO     | chi2: 1.6029840437783238
[2025-11-25 15:24:19] 2025-11-25 15:23:26,689 | INFO     | current memory leak: 6.73 B/s (using 560 data points, chi2=1.60)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,690 | INFO     | could have reported an average CPU frequency of 2893 MHz (23 samples)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,691 | INFO     | ..............................
[2025-11-25 15:24:19] 2025-11-25 15:23:26,691 | INFO     | . Timing measurements:
[2025-11-25 15:24:19] 2025-11-25 15:23:26,691 | INFO     | . get job = 0 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,692 | INFO     | . initial setup = 4 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,692 | INFO     | . payload setup = 17 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,692 | INFO     | . stage-in = 0 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,692 | INFO     | . payload execution = 35752 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,693 | INFO     | . stage-out = 4 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,693 | INFO     | . log creation = 0 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,693 | INFO     | ..............................
[2025-11-25 15:24:19] 2025-11-25 15:23:26,819 | INFO     | 
[2025-11-25 15:24:19] 2025-11-25 15:23:26,820 | INFO     | job summary report
[2025-11-25 15:24:19] 2025-11-25 15:23:26,820 | INFO     | --------------------------------------------------
[2025-11-25 15:24:19] 2025-11-25 15:23:26,821 | INFO     | PanDA job id: 6891569387
[2025-11-25 15:24:19] 2025-11-25 15:23:26,821 | INFO     | task id: 47493068
[2025-11-25 15:24:19] 2025-11-25 15:23:26,821 | INFO     | errors: (none)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,821 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:24:19] 2025-11-25 15:23:26,822 | INFO     | pilot state: finished 
[2025-11-25 15:24:19] 2025-11-25 15:23:26,822 | INFO     | transexitcode: 0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,822 | INFO     | exeerrorcode: 0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,823 | INFO     | exeerrordiag: 
[2025-11-25 15:24:19] 2025-11-25 15:23:26,823 | INFO     | exitcode: 0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,823 | INFO     | exitmsg: OK
[2025-11-25 15:24:19] 2025-11-25 15:23:26,823 | INFO     | cpuconsumptiontime: 273325 s
[2025-11-25 15:24:19] 2025-11-25 15:23:26,824 | INFO     | nevents: 1000
[2025-11-25 15:24:19] 2025-11-25 15:23:26,824 | INFO     | neventsw: 0
[2025-11-25 15:24:19] 2025-11-25 15:23:26,824 | INFO     | pid: 1012355
[2025-11-25 15:24:19] 2025-11-25 15:23:26,824 | INFO     | pgrp: 1012355
[2025-11-25 15:24:19] 2025-11-25 15:23:26,825 | INFO     | corecount: 8
[2025-11-25 15:24:19] 2025-11-25 15:23:26,825 | INFO     | event service: False
[2025-11-25 15:24:19] 2025-11-25 15:23:26,825 | INFO     | sizes: {0: 2283471, 1: 2284334, 2: 2284334, 12: 2284362, 14: 2284652, 23: 2284680, 35774: 2326434, 35778: 2335447, 35781: 2335503, 35799: 2335749}
[2025-11-25 15:24:19] 2025-11-25 15:23:26,826 | INFO     | --------------------------------------------------
[2025-11-25 15:24:19] 2025-11-25 15:23:26,826 | INFO     | 
[2025-11-25 15:24:19] 2025-11-25 15:23:26,826 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-25 15:24:19] 2025-11-25 15:23:26,872 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,873 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,873 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,874 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,876 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,876 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,876 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,879 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,879 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,879 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:24:19] 2025-11-25 15:23:26,880 | INFO     | job 6891569387 has completed (purged errors)
[2025-11-25 15:24:19] 2025-11-25 15:23:26,880 | INFO     | overall cleanup function is called
[2025-11-25 15:24:19] 2025-11-25 15:23:27,911 | INFO     | --- collectZombieJob: --- 10, [1012355]
[2025-11-25 15:24:19] 2025-11-25 15:23:27,912 | INFO     | zombie collector waiting for pid 1012355
[2025-11-25 15:24:19] 2025-11-25 15:23:27,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:24:19] 2025-11-25 15:23:27,913 | INFO     | collected zombie processes
[2025-11-25 15:24:19] 2025-11-25 15:23:27,953 | INFO     | will attempt to kill all subprocesses of pid=1012355
[2025-11-25 15:24:19] 2025-11-25 15:23:28,126 | INFO     | process IDs to be killed: [1012355] (in reverse order)
[2025-11-25 15:24:19] 2025-11-25 15:23:28,219 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:24:19] 2025-11-25 15:23:28,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:24:19] 2025-11-25 15:23:28,225 | INFO     | did not find any defunct processes belonging to 1012355
[2025-11-25 15:24:19] 2025-11-25 15:23:28,230 | INFO     | did not find any defunct processes belonging to 1012355
[2025-11-25 15:24:19] 2025-11-25 15:23:28,234 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:24:19] 2025-11-25 15:23:28,234 | INFO     | ready for new job
[2025-11-25 15:24:19] 2025-11-25 15:23:28,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:24:19] 2025-11-25 15:23:28,241 | INFO     | ***************************************
[2025-11-25 15:24:19] 2025-11-25 15:23:28,241 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:24:19] 2025-11-25 15:23:28,242 | INFO     | ***************************************
[2025-11-25 15:24:19] 2025-11-25 15:23:28,242 | INFO     | 
[2025-11-25 15:24:19] 2025-11-25 15:23:28,243 | INFO     | pilot is running in a VM
[2025-11-25 15:24:19] 2025-11-25 15:23:28,243 | INFO     | architecture information:
[2025-11-25 15:24:19] 2025-11-25 15:23:28,245 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:24:19] 2025-11-25 15:23:28,278 | INFO     | cat /etc/os-release:
[2025-11-25 15:24:19] NAME="CentOS Linux"
[2025-11-25 15:24:19] VERSION="7 (Core)"
[2025-11-25 15:24:19] ID="centos"
[2025-11-25 15:24:19] ID_LIKE="rhel fedora"
[2025-11-25 15:24:19] VERSION_ID="7"
[2025-11-25 15:24:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:24:19] ANSI_COLOR="0;31"
[2025-11-25 15:24:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:24:19] HOME_URL="https://www.centos.org/"
[2025-11-25 15:24:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:24:19] 
[2025-11-25 15:24:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:24:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:24:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:24:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:24:19] 
[2025-11-25 15:24:19] 2025-11-25 15:23:28,279 | INFO     | ***************************************
[2025-11-25 15:24:19] 2025-11-25 15:23:28,783 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-25 15:24:19] 2025-11-25 15:23:28,820 | INFO     | sufficient remaining disk space (13797163008 B)
[2025-11-25 15:24:19] 2025-11-25 15:23:28,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:24:19] 2025-11-25 15:23:28,821 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:24:19] 2025-11-25 15:23:28,822 | INFO     | update_server=False
[2025-11-25 15:24:19] 2025-11-25 15:23:28,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:24:19] 2025-11-25 15:23:28,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:24:19] 2025-11-25 15:23:28,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:24:19] 2025-11-25 15:23:29,106 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:24:19] 2025-11-25 15:23:29,107 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:24:19] 2025-11-25 15:23:29,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:24:19] 2025-11-25 15:23:29,107 | INFO     | will abort loop
[2025-11-25 15:24:19] 2025-11-25 15:23:29,160 | INFO     | all data control threads have been joined
[2025-11-25 15:24:19] 2025-11-25 15:23:29,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:24:19] 2025-11-25 15:23:29,828 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:29,829 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:29,848 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:29,861 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:29,953 | INFO     | all job control threads have been joined
[2025-11-25 15:24:19] 2025-11-25 15:23:30,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,113 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,166 | INFO     | [data] control thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,246 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,248 | INFO     | all payload control threads have been joined
[2025-11-25 15:24:19] 2025-11-25 15:23:30,386 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,619 | INFO     | [job] validate thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,809 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:30,959 | INFO     | [job] control thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:31,116 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:31,214 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:31,254 | INFO     | [payload] control thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:32,865 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:24:19] 2025-11-25 15:23:58,804 | INFO     | PID=1005936 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:24:19] 2025-11-25 15:23:58,804 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:24:19] 2025-11-25 15:23:58,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:24:19] 2025-11-25 15:23:58,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:24:19] 2025-11-25 15:24:13,397 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:24:19] 2025-11-25 15:24:14,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128175271491392)>', '<ExcThread(monitor, started 128174482507520)>']
[2025-11-25 15:24:19] 2025-11-25 15:24:14,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:24:19] 2025-11-25 15:24:14,889 | INFO     | [monitor] control thread has ended
[2025-11-25 15:24:19] 2025-11-25 15:24:19,220 | INFO     | all workflow threads have been joined
[2025-11-25 15:24:19] 2025-11-25 15:24:19,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:24:19] 2025-11-25 15:24:19,222 | INFO     | traces error code: 0
[2025-11-25 15:24:19] 2025-11-25 15:24:19,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:24:19] 2025-11-25 15:24:19,429 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:24:19] 2025-11-25 15:24:19,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:24:19] 2025-11-25 15:24:19,444 [wrapper] pilotpid: 1005936
[2025-11-25 15:24:19] 2025-11-25 15:24:19,452 [wrapper] Pilot exit status: 0
[2025-11-25 15:24:19] 2025-11-25 15:24:19,478 [wrapper] pandaids: 6891569387
[2025-11-25 15:24:19] 2025-11-25 15:24:19,555 [wrapper] cleanup supervisor_pilot 1076301 1005937
[2025-11-25 15:24:19] 2025-11-25 15:24:19,563 [wrapper] Test setup, not cleaning
[2025-11-25 15:24:19] 2025-11-25 15:24:19,572 [wrapper] apfmon messages muted
[2025-11-25 15:24:19] 2025-11-25 15:24:19,580 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:24:19] 2025-11-25 15:24:19,589 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:24:19]  *** Error codes and diagnostics ***
[2025-11-25 15:24:19]     "exeErrorCode": 0,
[2025-11-25 15:24:19]     "exeErrorDiag": "",
[2025-11-25 15:24:19]     "pilotErrorCode": 0,
[2025-11-25 15:24:19]     "pilotErrorDiag": "",
[2025-11-25 15:24:19]  *** Listing of results directory ***
[2025-11-25 15:24:19] total 1321464
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc    576529 Nov 18 15:15 pilot3.tar.gz
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc      5112 Nov 18 15:35 queuedata.json
[2025-11-25 15:24:19] -rwx------ 1 boinc boinc     36292 Nov 18 15:36 runpilot2-wrapper.sh
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc       100 Nov 25 05:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:24:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 05:25 run_atlas
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc       105 Nov 25 05:25 job.xml
[2025-11-25 15:24:19] -rw-r--r-- 2 boinc boinc 413166168 Nov 25 05:25 EVNT.47493065._000198.pool.root.1
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc      6316 Nov 25 05:25 init_data.xml
[2025-11-25 15:24:19] -rw-r--r-- 2 boinc boinc     15120 Nov 25 05:25 start_atlas.sh
[2025-11-25 15:24:19] drwxrwx--x 2 boinc boinc      4096 Nov 25 05:25 shared
[2025-11-25 15:24:19] -rw-r--r-- 2 boinc boinc    590098 Nov 25 05:25 input.tar.gz
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:25 boinc_lockfile
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc      2773 Nov 25 05:25 pandaJob.out
[2025-11-25 15:24:19] -rw------- 1 boinc boinc    991801 Nov 25 05:26 agis_schedconf.cvmfs.json
[2025-11-25 15:24:19] drwx------ 5 boinc boinc      4096 Nov 25 05:26 pilot3
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc       532 Nov 25 15:09 boinc_task_state.xml
[2025-11-25 15:24:19] -rw------- 1 boinc boinc 922188219 Nov 25 15:22 HITS.47493068._001976.pool.root.1
[2025-11-25 15:24:19] -rw------- 1 boinc boinc      1032 Nov 25 15:22 memory_monitor_summary.json
[2025-11-25 15:24:19] -rw------- 1 boinc boinc   1516240 Nov 25 15:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:24:19] -rw------- 1 boinc boinc   1866000 Nov 25 15:23 log.47493068._001976.job.log.tgz.1
[2025-11-25 15:24:19] -rw------- 1 boinc boinc        95 Nov 25 15:23 pilot_heartbeat.json
[2025-11-25 15:24:19] -rw------- 1 boinc boinc      8600 Nov 25 15:23 heartbeat.json
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc      8192 Nov 25 15:24 boinc_mmap_file
[2025-11-25 15:24:19] -rw------- 1 boinc boinc      5003 Nov 25 15:24 pilotlog.txt
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc        29 Nov 25 15:24 wrapper_checkpoint.txt
[2025-11-25 15:24:19] -rw------- 1 boinc boinc   5085392 Nov 25 15:24 log.47493068._001976.job.log.1
[2025-11-25 15:24:19] -rw------- 1 boinc boinc       353 Nov 25 15:24 output.list
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc       620 Nov 25 15:24 runtime_log
[2025-11-25 15:24:19] -rw------- 1 boinc boinc   6973440 Nov 25 15:24 result.tar.gz
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc      8776 Nov 25 15:24 runtime_log.err
[2025-11-25 15:24:19] -rw------- 1 boinc boinc       656 Nov 25 15:24 bd6NDmTwcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMYFKDmt16iUn.diag
[2025-11-25 15:24:19] -rw-r--r-- 1 boinc boinc     21691 Nov 25 15:24 stderr.txt
[2025-11-25 15:24:19] HITS file was successfully produced:
[2025-11-25 15:24:19] -rw------- 1 boinc boinc 922188219 Nov 25 15:22 shared/HITS.pool.root.1
[2025-11-25 15:24:19]  *** Contents of shared directory: ***
[2025-11-25 15:24:19] total 1311476
[2025-11-25 15:24:19] -rw-r--r-- 2 boinc boinc 413166168 Nov 25 05:25 ATLAS.root_0
[2025-11-25 15:24:19] -rw-r--r-- 2 boinc boinc     15120 Nov 25 05:25 start_atlas.sh
[2025-11-25 15:24:19] -rw-r--r-- 2 boinc boinc    590098 Nov 25 05:25 input.tar.gz
[2025-11-25 15:24:19] -rw------- 1 boinc boinc 922188219 Nov 25 15:22 HITS.pool.root.1
[2025-11-25 15:24:19] -rw------- 1 boinc boinc   6973440 Nov 25 15:24 result.tar.gz
15:24:21 (1002211): run_atlas exited; CPU time 272954.240777
15:24:21 (1002211): called boinc_finish(0)

</stderr_txt>
]]>

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