Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:56:14 (18189): wrapper (7.7.26015): starting
04:56:14 (18189): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:56:14] Arguments: --nthreads 8
[2025-11-27 04:56:14] Threads: 8
[2025-11-27 04:56:14] Checking for CVMFS
[2025-11-27 04:56:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:56:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:56:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:56:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:56:17] 2.11.2.0 1477 191414 134972 153345 1 85 20637273 25165824 1288 130560 13 65202368 99.878 32295042 2315 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 04:56:17] CVMFS is ok
[2025-11-27 04:56:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:56:17] Checking for apptainer binary...
[2025-11-27 04:56:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:56:17] Running /usr/bin/apptainer --version
[2025-11-27 04:56:17] apptainer version 1.3.2-1.el7
[2025-11-27 04:56:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:56:31] cg-vwn317.simple-grid.lan
[2025-11-27 04:56:31] apptainer works
[2025-11-27 04:56:31] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:56:31] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:56:32] Starting ATLAS job with PandaID=6891601176
[2025-11-27 04:56:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:26:28]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:26:28] 2025-11-28 03:25:33,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:26:28] 2025-11-28 03:25:33,823 | INFO     | time since job start (84340s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:35,832 | INFO     | time since job start (84342s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:36,013 | INFO     | monitor loop #5674: job 0:6891601176 is in state 'finished'
[2025-11-28 04:26:28] 2025-11-28 03:25:36,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:26:28] 2025-11-28 03:25:37,846 | INFO     | time since job start (84344s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:38,518 | INFO     | monitor loop #5675: job 0:6891601176 is in state 'finished'
[2025-11-28 04:26:28] 2025-11-28 03:25:38,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:26:28] 2025-11-28 03:25:39,853 | INFO     | time since job start (84346s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:41,023 | INFO     | monitor loop #5676: job 0:6891601176 is in state 'finished'
[2025-11-28 04:26:28] 2025-11-28 03:25:41,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:26:28] 2025-11-28 03:25:41,863 | INFO     | time since job start (84348s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:43,529 | INFO     | monitor loop #5677: job 0:6891601176 is in state 'finished'
[2025-11-28 04:26:28] 2025-11-28 03:25:43,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:26:28] 2025-11-28 03:25:43,870 | INFO     | time since job start (84350s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:45,474 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 04:26:28] 2025-11-28 03:25:45,475 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 04:26:28] 2025-11-28 03:25:45,477 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6891601176/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 04:26:28] 2025-11-28 03:25:45,477 | INFO     | extracted standard info from prmon json
[2025-11-28 04:26:28] 2025-11-28 03:25:45,478 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:26:28] 2025-11-28 03:25:45,478 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:26:28] 2025-11-28 03:25:45,519 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:26:28] 2025-11-28 03:25:45,521 | INFO     | sum of square deviations: 802581425906.633
[2025-11-28 04:26:28] 2025-11-28 03:25:45,608 | INFO     | sum of deviations: 3007152176297.755
[2025-11-28 04:26:28] 2025-11-28 03:25:45,608 | INFO     | mean x: 1764258348.0495267
[2025-11-28 04:26:28] 2025-11-28 03:25:45,608 | INFO     | mean y: 2837373.944646759
[2025-11-28 04:26:28] 2025-11-28 03:25:45,608 | INFO     | intersect: -6607573930.921272
[2025-11-28 04:26:28] 2025-11-28 03:25:45,610 | INFO     | chi2: 22.639032743160875
[2025-11-28 04:26:28] 2025-11-28 03:25:45,612 | INFO     | sum of square deviations: 793845552766.1051
[2025-11-28 04:26:28] 2025-11-28 03:25:45,665 | INFO     | sum of deviations: 3447452079450.468
[2025-11-28 04:26:28] 2025-11-28 03:25:45,665 | INFO     | mean x: 1764258195.5533626
[2025-11-28 04:26:28] 2025-11-28 03:25:45,665 | INFO     | mean y: 2845060.527777778
[2025-11-28 04:26:28] 2025-11-28 03:25:45,665 | INFO     | intersect: -7658841225.620629
[2025-11-28 04:26:28] 2025-11-28 03:25:45,667 | INFO     | chi2: 19.60357833114818
[2025-11-28 04:26:28] 2025-11-28 03:25:45,667 | INFO     | current chi2=19.60357833114818 (change=13.40805698922666 %)
[2025-11-28 04:26:28] 2025-11-28 03:25:45,667 | INFO     | right removable region: 1367
[2025-11-28 04:26:28] 2025-11-28 03:25:45,669 | INFO     | sum of square deviations: 793844673756.105
[2025-11-28 04:26:28] 2025-11-28 03:25:45,727 | INFO     | sum of deviations: 2443261832511.492
[2025-11-28 04:26:28] 2025-11-28 03:25:45,727 | INFO     | mean x: 1764258500.5533626
[2025-11-28 04:26:28] 2025-11-28 03:25:45,727 | INFO     | mean y: 2847216.0891812867
[2025-11-28 04:26:28] 2025-11-28 03:25:45,728 | INFO     | intersect: -5427113580.511599
[2025-11-28 04:26:28] 2025-11-28 03:25:45,729 | INFO     | chi2: 18.1297371311413
[2025-11-28 04:26:28] 2025-11-28 03:25:45,729 | INFO     | current chi2=18.1297371311413 (change=19.918234419188284 %)
[2025-11-28 04:26:28] 2025-11-28 03:25:45,729 | INFO     | left removable region: 10
[2025-11-28 04:26:28] 2025-11-28 03:25:45,731 | INFO     | sum of square deviations: 774848520820.8007
[2025-11-28 04:26:28] 2025-11-28 03:25:45,786 | INFO     | sum of deviations: 2495028247209.65
[2025-11-28 04:26:28] 2025-11-28 03:25:45,787 | INFO     | mean x: 1764258470.0619013
[2025-11-28 04:26:28] 2025-11-28 03:25:45,787 | INFO     | mean y: 2865844.873249816
[2025-11-28 04:26:28] 2025-11-28 03:25:45,787 | INFO     | intersect: -5678082882.395917
[2025-11-28 04:26:28] 2025-11-28 03:25:45,789 | INFO     | chi2: 10.620174498140532
[2025-11-28 04:26:28] 2025-11-28 03:25:45,789 | INFO     | current memory leak: 3.22 B/s (using 1357 data points, chi2=10.62)
[2025-11-28 04:26:28] 2025-11-28 03:25:45,790 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 04:26:28] 2025-11-28 03:25:45,790 | INFO     | ..............................
[2025-11-28 04:26:28] 2025-11-28 03:25:45,790 | INFO     | . Timing measurements:
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . get job = 0 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . initial setup = 7 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . payload setup = 147 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . stage-in = 0 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . payload execution = 83916 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . stage-out = 5 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | . log creation = 2 s
[2025-11-28 04:26:28] 2025-11-28 03:25:45,791 | INFO     | ..............................
[2025-11-28 04:26:28] 2025-11-28 03:25:45,902 | INFO     | time since job start (84352s) is within the limit (172800.0s)
[2025-11-28 04:26:28] 2025-11-28 03:25:46,184 | INFO     | 
[2025-11-28 04:26:28] 2025-11-28 03:25:46,184 | INFO     | job summary report
[2025-11-28 04:26:28] 2025-11-28 03:25:46,184 | INFO     | --------------------------------------------------
[2025-11-28 04:26:28] 2025-11-28 03:25:46,184 | INFO     | PanDA job id: 6891601176
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | task id: 47493068
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | errors: (none)
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | pilot state: finished 
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | transexitcode: 0
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | exeerrorcode: 0
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | exeerrordiag: 
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | exitcode: 0
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | exitmsg: OK
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | cpuconsumptiontime: 316903 s
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | nevents: 1000
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | neventsw: 0
[2025-11-28 04:26:28] 2025-11-28 03:25:46,185 | INFO     | pid: 28508
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | pgrp: 28508
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | corecount: 8
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | event service: False
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | sizes: {0: 2283425, 1: 2284282, 12: 2284282, 23: 2284310, 34: 2284338, 44: 2284366, 55: 2284522, 66: 2284550, 77: 2284578, 87: 2284634, 94: 2284924, 98: 2285232, 8
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | --------------------------------------------------
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | 
[2025-11-28 04:26:28] 2025-11-28 03:25:46,186 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-28 04:26:28] 2025-11-28 03:25:46,307 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:26:28] 2025-11-28 03:25:46,310 | INFO     | job 6891601176 has completed (purged errors)
[2025-11-28 04:26:28] 2025-11-28 03:25:46,310 | INFO     | overall cleanup function is called
[2025-11-28 04:26:28] 2025-11-28 03:25:47,333 | INFO     | --- collectZombieJob: --- 10, [28508]
[2025-11-28 04:26:28] 2025-11-28 03:25:47,333 | INFO     | zombie collector waiting for pid 28508
[2025-11-28 04:26:28] 2025-11-28 03:25:47,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:26:28] 2025-11-28 03:25:47,333 | INFO     | collected zombie processes
[2025-11-28 04:26:28] 2025-11-28 03:25:47,333 | INFO     | will attempt to kill all subprocesses of pid=28508
[2025-11-28 04:26:28] 2025-11-28 03:25:47,442 | INFO     | process IDs to be killed: [28508] (in reverse order)
[2025-11-28 04:26:28] 2025-11-28 03:25:48,168 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:26:28] 2025-11-28 03:25:48,168 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:26:28] 2025-11-28 03:25:48,171 | INFO     | did not find any defunct processes belonging to 28508
[2025-11-28 04:26:28] 2025-11-28 03:25:48,173 | INFO     | did not find any defunct processes belonging to 28508
[2025-11-28 04:26:28] 2025-11-28 03:25:48,230 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:26:28] 2025-11-28 03:25:48,231 | INFO     | ready for new job
[2025-11-28 04:26:28] 2025-11-28 03:25:48,231 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:26:28] 2025-11-28 03:25:48,236 | INFO     | ***************************************
[2025-11-28 04:26:28] 2025-11-28 03:25:48,236 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:26:28] 2025-11-28 03:25:48,236 | INFO     | ***************************************
[2025-11-28 04:26:28] 2025-11-28 03:25:48,236 | INFO     | 
[2025-11-28 04:26:28] 2025-11-28 03:25:48,237 | INFO     | pilot is running in a VM
[2025-11-28 04:26:28] 2025-11-28 03:25:48,237 | INFO     | architecture information:
[2025-11-28 04:26:28] 2025-11-28 03:25:48,244 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:26:28] 2025-11-28 03:25:48,360 | INFO     | cat /etc/os-release:
[2025-11-28 04:26:28] NAME="CentOS Linux"
[2025-11-28 04:26:28] VERSION="7 (Core)"
[2025-11-28 04:26:28] ID="centos"
[2025-11-28 04:26:28] ID_LIKE="rhel fedora"
[2025-11-28 04:26:28] VERSION_ID="7"
[2025-11-28 04:26:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:26:28] ANSI_COLOR="0;31"
[2025-11-28 04:26:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:26:28] HOME_URL="https://www.centos.org/"
[2025-11-28 04:26:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:26:28] 
[2025-11-28 04:26:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:26:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:26:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:26:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:26:28] 
[2025-11-28 04:26:28] 2025-11-28 03:25:48,360 | INFO     | ***************************************
[2025-11-28 04:26:28] 2025-11-28 03:25:48,863 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-28 04:26:28] 2025-11-28 03:25:49,133 | INFO     | sufficient remaining disk space (495307456512 B)
[2025-11-28 04:26:28] 2025-11-28 03:25:49,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:26:28] 2025-11-28 03:25:49,134 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:26:28] 2025-11-28 03:25:49,134 | INFO     | update_server=False
[2025-11-28 04:26:28] 2025-11-28 03:25:49,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:26:28] 2025-11-28 03:25:49,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:26:28] 2025-11-28 03:25:49,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:26:28] 2025-11-28 03:25:49,268 | INFO     | all data control threads have been joined
[2025-11-28 04:26:28] 2025-11-28 03:25:49,304 | INFO     | all payload control threads have been joined
[2025-11-28 04:26:28] 2025-11-28 03:25:49,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:26:28] 2025-11-28 03:25:49,573 | INFO     | aborting loop
[2025-11-28 04:26:28] 2025-11-28 03:25:49,948 | INFO     | all job control threads have been joined
[2025-11-28 04:26:28] 2025-11-28 03:25:50,140 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,181 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,274 | INFO     | [data] control thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,310 | INFO     | [payload] control thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,399 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,579 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,667 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:26:28] 2025-11-28 03:25:50,954 | INFO     | [job] control thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:50,978 | INFO     | [job] validate thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:51,141 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:51,368 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:51,547 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:51,591 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:51,627 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:51,927 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:25:53,149 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:26:28] 2025-11-28 03:26:19,057 | INFO     | PID=21945 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 04:26:28] 2025-11-28 03:26:19,057 | INFO     | .. there are 9 such processes running
[2025-11-28 04:26:28] 2025-11-28 03:26:19,058 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:26:28] 2025-11-28 03:26:19,058 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:26:28] 2025-11-28 03:26:19,058 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:26:28] 2025-11-28 03:26:19,285 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:26:28] 2025-11-28 03:26:20,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838691292992)>', '<ExcThread(monitor, started 139838380545792)>']
[2025-11-28 04:26:28] 2025-11-28 03:26:21,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:26:28] 2025-11-28 03:26:21,070 | INFO     | [monitor] control thread has ended
[2025-11-28 04:26:28] 2025-11-28 03:26:25,523 | INFO     | all workflow threads have been joined
[2025-11-28 04:26:28] 2025-11-28 03:26:25,523 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:26:28] 2025-11-28 03:26:25,523 | INFO     | traces error code: 0
[2025-11-28 04:26:28] 2025-11-28 03:26:25,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:26:28] 2025-11-28 03:26:25,692 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:26:28] 2025-11-28 03:26:25,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:26:28] 2025-11-28 03:26:25,800 [wrapper] pilotpid: 21945
[2025-11-28 04:26:28] 2025-11-28 03:26:25,810 [wrapper] Pilot exit status: 0
[2025-11-28 04:26:28] 2025-11-28 03:26:26,134 [wrapper] pandaids: 6891601176
[2025-11-28 04:26:28] 2025-11-28 03:26:26,544 [wrapper] cleanup supervisor_pilot 31756 21946
[2025-11-28 04:26:28] 2025-11-28 03:26:26,642 [wrapper] Test setup, not cleaning
[2025-11-28 04:26:28] 2025-11-28 03:26:26,704 [wrapper] apfmon messages muted
[2025-11-28 04:26:28] 2025-11-28 03:26:26,717 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:26:28] 2025-11-28 03:26:26,791 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:26:28]  *** Error codes and diagnostics ***
[2025-11-28 04:26:28]     "exeErrorCode": 0,
[2025-11-28 04:26:28]     "exeErrorDiag": "",
[2025-11-28 04:26:28]     "pilotErrorCode": 0,
[2025-11-28 04:26:28]     "pilotErrorDiag": "",
[2025-11-28 04:26:28]  *** Listing of results directory ***
[2025-11-28 04:26:28] total 1329960
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc      5112 Nov 18 20:03 queuedata.json
[2025-11-28 04:26:28] -rwx------. 1 boinc boinc     36292 Nov 18 20:04 runpilot2-wrapper.sh
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc       100 Nov 27 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:26:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 04:56 run_atlas
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc       105 Nov 27 04:56 job.xml
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc      6391 Nov 27 04:56 init_data.xml
[2025-11-28 04:26:28] -rw-r--r--. 2 boinc boinc 411750097 Nov 27 04:56 EVNT.47493065._000822.pool.root.1
[2025-11-28 04:26:28] -rw-r--r--. 2 boinc boinc     15120 Nov 27 04:56 start_atlas.sh
[2025-11-28 04:26:28] drwxrwx--x. 2 boinc boinc        68 Nov 27 04:56 shared
[2025-11-28 04:26:28] -rw-r--r--. 2 boinc boinc    590095 Nov 27 04:56 input.tar.gz
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc         0 Nov 27 04:56 boinc_lockfile
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc      2772 Nov 27 04:56 pandaJob.out
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc    991546 Nov 27 04:59 agis_schedconf.cvmfs.json
[2025-11-28 04:26:28] drwx------. 5 boinc boinc      4096 Nov 27 04:59 pilot3
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc       533 Nov 28 03:58 boinc_task_state.xml
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc 918775471 Nov 28 04:22 HITS.47493068._006868.pool.root.1
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc      1028 Nov 28 04:24 memory_monitor_summary.json
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc   1516240 Nov 28 04:24 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc   2465403 Nov 28 04:24 log.47493068._006868.job.log.tgz.1
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc      8628 Nov 28 04:25 heartbeat.json
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc      8192 Nov 28 04:26 boinc_mmap_file
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc        29 Nov 28 04:26 wrapper_checkpoint.txt
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc        95 Nov 28 04:26 pilot_heartbeat.json
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc      4885 Nov 28 04:26 pilotlog.txt
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc  11261938 Nov 28 04:26 log.47493068._006868.job.log.1
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc       353 Nov 28 04:26 output.list
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc       620 Nov 28 04:26 runtime_log
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc  13742080 Nov 28 04:26 result.tar.gz
[2025-11-28 04:26:28] -rw-------. 1 boinc boinc       663 Nov 28 04:26 WV1NDmSBgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2kFKDmO35Nqn.diag
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc      8717 Nov 28 04:26 runtime_log.err
[2025-11-28 04:26:28] -rw-r--r--. 1 boinc boinc     21437 Nov 28 04:26 stderr.txt
[2025-11-28 04:26:29] HITS file was successfully produced:
[2025-11-28 04:26:29] -rw-------. 1 boinc boinc 918775471 Nov 28 04:22 shared/HITS.pool.root.1
[2025-11-28 04:26:29]  *** Contents of shared directory: ***
[2025-11-28 04:26:29] total 1313360
[2025-11-28 04:26:29] -rw-r--r--. 2 boinc boinc 411750097 Nov 27 04:56 ATLAS.root_0
[2025-11-28 04:26:29] -rw-r--r--. 2 boinc boinc     15120 Nov 27 04:56 start_atlas.sh
[2025-11-28 04:26:29] -rw-r--r--. 2 boinc boinc    590095 Nov 27 04:56 input.tar.gz
[2025-11-28 04:26:29] -rw-------. 1 boinc boinc 918775471 Nov 28 04:22 HITS.pool.root.1
[2025-11-28 04:26:29] -rw-------. 1 boinc boinc  13742080 Nov 28 04:26 result.tar.gz
04:26:30 (18189): run_atlas exited; CPU time 317488.218880
04:26:30 (18189): called boinc_finish(0)

</stderr_txt>
]]>

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