Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:42:34 (6244): wrapper (7.7.26015): starting
10:42:34 (6244): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 10:42:34] Arguments: --nthreads 8
[2025-11-24 10:42:34] Threads: 8
[2025-11-24 10:42:34] Checking for CVMFS
[2025-11-24 10:42:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:42:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:42:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:42:34] 2.11.2.0 2466 114984 132624 153250 1 82 11345253 18432000 1885 130560 0 81266012 99.972 4975450 28173 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 10:42:34] CVMFS is ok
[2025-11-24 10:42:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:42:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:42:34] Further information can be found at the LHC@home message board.
[2025-11-24 10:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:42:34] Checking for apptainer binary...
[2025-11-24 10:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:42:34] Running /usr/bin/apptainer --version
[2025-11-24 10:42:34] apptainer version 1.3.2-1.el7
[2025-11-24 10:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:42:35] c-206-20.aglt2.org
[2025-11-24 10:42:35] apptainer works
[2025-11-24 10:42:35] Set ATHENA_PROC_NUMBER=8
[2025-11-24 10:42:35] Set ATHENA_CORE_NUMBER=8
[2025-11-24 10:42:35] Starting ATLAS job with PandaID=6895365876
[2025-11-24 10:42:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:36:53]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:36:53] 2025-11-25 11:35:55,330 | INFO     | monitor loop #5123: job 0:6895365876 is in state 'finished'
[2025-11-25 06:36:53] 2025-11-25 11:35:55,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:36:53] 2025-11-25 11:35:55,645 | INFO     | time since job start (71589s) is within the limit (172800.0s)
[2025-11-25 06:36:53] 2025-11-25 11:35:55,929 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 06:36:53] 2025-11-25 11:35:55,935 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.0833333333335
[2025-11-25 06:36:53] 2025-11-25 11:35:55,940 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895365876/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 06:36:53] 2025-11-25 11:35:55,941 | INFO     | extracted standard info from prmon json
[2025-11-25 06:36:53] 2025-11-25 11:35:55,941 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:36:53] 2025-11-25 11:35:55,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:36:53] 2025-11-25 11:35:55,973 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:36:53] 2025-11-25 11:35:55,975 | INFO     | sum of square deviations: 500461645744.1802
[2025-11-25 06:36:53] 2025-11-25 11:35:56,022 | INFO     | sum of deviations: 2246698053330.381
[2025-11-25 06:36:53] 2025-11-25 11:35:56,023 | INFO     | mean x: 1764034738.6402388
[2025-11-25 06:36:53] 2025-11-25 11:35:56,023 | INFO     | mean y: 2869497.3563512363
[2025-11-25 06:36:53] 2025-11-25 11:35:56,023 | INFO     | intersect: -7916325603.83244
[2025-11-25 06:36:53] 2025-11-25 11:35:56,025 | INFO     | chi2: 5.485928410698607
[2025-11-25 06:36:53] 2025-11-25 11:35:56,027 | INFO     | sum of square deviations: 494089327407.1226
[2025-11-25 06:36:53] 2025-11-25 11:35:56,074 | INFO     | sum of deviations: 2561726618634.6343
[2025-11-25 06:36:53] 2025-11-25 11:35:56,074 | INFO     | mean x: 1764034586.1429794
[2025-11-25 06:36:53] 2025-11-25 11:35:56,074 | INFO     | mean y: 2877032.529109589
[2025-11-25 06:36:53] 2025-11-25 11:35:56,075 | INFO     | intersect: -9143190499.89308
[2025-11-25 06:36:53] 2025-11-25 11:35:56,076 | INFO     | chi2: 3.2669590878182513
[2025-11-25 06:36:53] 2025-11-25 11:35:56,076 | INFO     | current chi2=3.2669590878182513 (change=40.44838278518076 %)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,078 | INFO     | sum of square deviations: 487771335670.04614
[2025-11-25 06:36:53] 2025-11-25 11:35:56,125 | INFO     | sum of deviations: 2738028612546.559
[2025-11-25 06:36:53] 2025-11-25 11:35:56,126 | INFO     | mean x: 1764034433.6457438
[2025-11-25 06:36:53] 2025-11-25 11:35:56,126 | INFO     | mean y: 2881286.324161651
[2025-11-25 06:36:53] 2025-11-25 11:35:56,126 | INFO     | intersect: -9899251946.25812
[2025-11-25 06:36:53] 2025-11-25 11:35:56,128 | INFO     | chi2: 2.504721049570397
[2025-11-25 06:36:53] 2025-11-25 11:35:56,128 | INFO     | current chi2=2.504721049570397 (change=23.33172891849386 %)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,128 | INFO     | right removable region: 1162
[2025-11-25 06:36:53] 2025-11-25 11:35:56,130 | INFO     | sum of square deviations: 494088869297.1226
[2025-11-25 06:36:53] 2025-11-25 11:35:56,177 | INFO     | sum of deviations: 1943369632301.9827
[2025-11-25 06:36:53] 2025-11-25 11:35:56,177 | INFO     | mean x: 1764034891.1429794
[2025-11-25 06:36:53] 2025-11-25 11:35:56,178 | INFO     | mean y: 2876748.1558219176
[2025-11-25 06:36:53] 2025-11-25 11:35:56,178 | INFO     | intersect: -6935494162.011055
[2025-11-25 06:36:53] 2025-11-25 11:35:56,179 | INFO     | chi2: 3.4712630777989073
[2025-11-25 06:36:53] 2025-11-25 11:35:56,180 | INFO     | current chi2=3.4712630777989073 (change=36.72423666649966 %)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,181 | INFO     | sum of square deviations: 487770633316.9133
[2025-11-25 06:36:53] 2025-11-25 11:35:56,228 | INFO     | sum of deviations: 1866914358623.4983
[2025-11-25 06:36:53] 2025-11-25 11:35:56,228 | INFO     | mean x: 1764035043.6431642
[2025-11-25 06:36:53] 2025-11-25 11:35:56,228 | INFO     | mean y: 2878593.0060189166
[2025-11-25 06:36:53] 2025-11-25 11:35:56,228 | INFO     | intersect: -6748865212.678845
[2025-11-25 06:36:53] 2025-11-25 11:35:56,230 | INFO     | chi2: 3.4189898417004887
[2025-11-25 06:36:53] 2025-11-25 11:35:56,230 | INFO     | current chi2=3.4189898417004887 (change=1.5058851757085647 %)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,230 | INFO     | left removable region: 20
[2025-11-25 06:36:53] 2025-11-25 11:35:56,232 | INFO     | sum of square deviations: 461822642318.69354
[2025-11-25 06:36:53] 2025-11-25 11:35:56,277 | INFO     | sum of deviations: 2282517852848.2837
[2025-11-25 06:36:53] 2025-11-25 11:35:56,277 | INFO     | mean x: 1764035013.1488616
[2025-11-25 06:36:53] 2025-11-25 11:35:56,278 | INFO     | mean y: 2893790.0218914184
[2025-11-25 06:36:53] 2025-11-25 11:35:56,278 | INFO     | intersect: -8715694346.64027
[2025-11-25 06:36:53] 2025-11-25 11:35:56,279 | INFO     | chi2: 0.31253222730733726
[2025-11-25 06:36:53] 2025-11-25 11:35:56,280 | INFO     | current memory leak: 4.94 B/s (using 1142 data points, chi2=0.31)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,281 | INFO     | could have reported an average CPU frequency of 2623 MHz (43 samples)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,281 | INFO     | ..............................
[2025-11-25 06:36:53] 2025-11-25 11:35:56,282 | INFO     | . Timing measurements:
[2025-11-25 06:36:53] 2025-11-25 11:35:56,282 | INFO     | . get job = 0 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,282 | INFO     | . initial setup = 2 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,282 | INFO     | . payload setup = 5 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,282 | INFO     | . stage-in = 0 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,282 | INFO     | . payload execution = 71555 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,283 | INFO     | . stage-out = 4 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,283 | INFO     | . log creation = 0 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,283 | INFO     | ..............................
[2025-11-25 06:36:53] 2025-11-25 11:35:56,853 | INFO     | 
[2025-11-25 06:36:53] 2025-11-25 11:35:56,855 | INFO     | job summary report
[2025-11-25 06:36:53] 2025-11-25 11:35:56,855 | INFO     | --------------------------------------------------
[2025-11-25 06:36:53] 2025-11-25 11:35:56,855 | INFO     | PanDA job id: 6895365876
[2025-11-25 06:36:53] 2025-11-25 11:35:56,855 | INFO     | task id: 47556137
[2025-11-25 06:36:53] 2025-11-25 11:35:56,855 | INFO     | errors: (none)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:36:53] 2025-11-25 11:35:56,856 | INFO     | pilot state: finished 
[2025-11-25 06:36:53] 2025-11-25 11:35:56,856 | INFO     | transexitcode: 0
[2025-11-25 06:36:53] 2025-11-25 11:35:56,856 | INFO     | exeerrorcode: 0
[2025-11-25 06:36:53] 2025-11-25 11:35:56,856 | INFO     | exeerrordiag: 
[2025-11-25 06:36:53] 2025-11-25 11:35:56,856 | INFO     | exitcode: 0
[2025-11-25 06:36:53] 2025-11-25 11:35:56,857 | INFO     | exitmsg: OK
[2025-11-25 06:36:53] 2025-11-25 11:35:56,857 | INFO     | cpuconsumptiontime: 550375 s
[2025-11-25 06:36:53] 2025-11-25 11:35:56,857 | INFO     | nevents: 1000
[2025-11-25 06:36:53] 2025-11-25 11:35:56,857 | INFO     | neventsw: 0
[2025-11-25 06:36:53] 2025-11-25 11:35:56,857 | INFO     | pid: 16408
[2025-11-25 06:36:53] 2025-11-25 11:35:56,857 | INFO     | pgrp: 16408
[2025-11-25 06:36:53] 2025-11-25 11:35:56,858 | INFO     | corecount: 8
[2025-11-25 06:36:53] 2025-11-25 11:35:56,858 | INFO     | event service: False
[2025-11-25 06:36:53] 2025-11-25 11:35:56,858 | INFO     | sizes: {0: 2284088, 1: 2284287, 4: 2284549, 12: 2284577, 71564: 2341735, 71569: 2350918, 71575: 2351108}
[2025-11-25 06:36:53] 2025-11-25 11:35:56,858 | INFO     | --------------------------------------------------
[2025-11-25 06:36:53] 2025-11-25 11:35:56,858 | INFO     | 
[2025-11-25 06:36:53] 2025-11-25 11:35:56,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 06:36:53] 2025-11-25 11:35:56,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,874 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,874 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,876 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,877 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,877 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,877 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:36:53] 2025-11-25 11:35:56,877 | INFO     | job 6895365876 has completed (purged errors)
[2025-11-25 06:36:53] 2025-11-25 11:35:56,877 | INFO     | overall cleanup function is called
[2025-11-25 06:36:53] 2025-11-25 11:35:57,892 | INFO     | --- collectZombieJob: --- 10, [16408]
[2025-11-25 06:36:53] 2025-11-25 11:35:57,892 | INFO     | zombie collector waiting for pid 16408
[2025-11-25 06:36:53] 2025-11-25 11:35:58,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:36:53] 2025-11-25 11:35:58,033 | INFO     | collected zombie processes
[2025-11-25 06:36:53] 2025-11-25 11:35:58,034 | INFO     | will attempt to kill all subprocesses of pid=16408
[2025-11-25 06:36:53] 2025-11-25 11:35:58,161 | INFO     | process IDs to be killed: [16408] (in reverse order)
[2025-11-25 06:36:53] 2025-11-25 11:35:58,218 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:36:53] 2025-11-25 11:35:58,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:36:53] 2025-11-25 11:35:58,224 | INFO     | did not find any defunct processes belonging to 16408
[2025-11-25 06:36:53] 2025-11-25 11:35:58,230 | INFO     | did not find any defunct processes belonging to 16408
[2025-11-25 06:36:53] 2025-11-25 11:35:58,231 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:36:53] 2025-11-25 11:35:58,232 | INFO     | ready for new job
[2025-11-25 06:36:53] 2025-11-25 11:35:58,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:36:53] 2025-11-25 11:35:58,237 | INFO     | ***************************************
[2025-11-25 06:36:53] 2025-11-25 11:35:58,237 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:36:53] 2025-11-25 11:35:58,237 | INFO     | ***************************************
[2025-11-25 06:36:53] 2025-11-25 11:35:58,237 | INFO     | 
[2025-11-25 06:36:53] 2025-11-25 11:35:58,239 | INFO     | architecture information:
[2025-11-25 06:36:53] 2025-11-25 11:35:58,239 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:36:53] 2025-11-25 11:35:58,255 | INFO     | cat /etc/os-release:
[2025-11-25 06:36:53] NAME="CentOS Linux"
[2025-11-25 06:36:53] VERSION="7 (Core)"
[2025-11-25 06:36:53] ID="centos"
[2025-11-25 06:36:53] ID_LIKE="rhel fedora"
[2025-11-25 06:36:53] VERSION_ID="7"
[2025-11-25 06:36:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:36:53] ANSI_COLOR="0;31"
[2025-11-25 06:36:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:36:53] HOME_URL="https://www.centos.org/"
[2025-11-25 06:36:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:36:53] 
[2025-11-25 06:36:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:36:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:36:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:36:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:36:53] 
[2025-11-25 06:36:53] 2025-11-25 11:35:58,256 | INFO     | ***************************************
[2025-11-25 06:36:53] 2025-11-25 11:35:58,758 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 06:36:53] 2025-11-25 11:35:58,774 | INFO     | sufficient remaining disk space (26275217408 B)
[2025-11-25 06:36:53] 2025-11-25 11:35:58,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:36:53] 2025-11-25 11:35:58,774 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:36:53] 2025-11-25 11:35:58,775 | INFO     | update_server=False
[2025-11-25 06:36:53] 2025-11-25 11:35:58,775 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:36:53] 2025-11-25 11:35:58,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:36:53] 2025-11-25 11:35:58,844 | INFO     | aborting loop
[2025-11-25 06:36:53] 2025-11-25 11:35:58,932 | INFO     | all data control threads have been joined
[2025-11-25 06:36:53] 2025-11-25 11:35:59,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:36:53] 2025-11-25 11:35:59,755 | INFO     | all job control threads have been joined
[2025-11-25 06:36:53] 2025-11-25 11:35:59,780 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:35:59,851 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:35:59,937 | INFO     | [data] control thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:35:59,977 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:00,083 | INFO     | all payload control threads have been joined
[2025-11-25 06:36:53] 2025-11-25 11:36:00,167 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:00,760 | INFO     | [job] control thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:00,918 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,080 | INFO     | [job] validate thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,088 | INFO     | [payload] control thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,123 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,125 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,216 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,252 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:01,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:36:53] 2025-11-25 11:36:01,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:36:53] 2025-11-25 11:36:02,453 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:05,797 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:36:53] 2025-11-25 11:36:28,876 | INFO     | PID=9933 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 06:36:53] 2025-11-25 11:36:28,876 | INFO     | .. there are 3 such processes running
[2025-11-25 06:36:53] 2025-11-25 11:36:28,877 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:36:53] 2025-11-25 11:36:28,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:36:53] 2025-11-25 11:36:28,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:36:53] 2025-11-25 11:36:45,784 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:36:53] 2025-11-25 11:36:47,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650568730432)>', '<ExcThread(monitor, started 139649913710336)>']
[2025-11-25 06:36:53] 2025-11-25 11:36:47,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:36:53] 2025-11-25 11:36:47,983 | INFO     | [monitor] control thread has ended
[2025-11-25 06:36:53] 2025-11-25 11:36:52,722 | INFO     | all workflow threads have been joined
[2025-11-25 06:36:53] 2025-11-25 11:36:52,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:36:53] 2025-11-25 11:36:52,737 | INFO     | traces error code: 0
[2025-11-25 06:36:53] 2025-11-25 11:36:52,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:36:53] 2025-11-25 11:36:52,836 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:36:53] 2025-11-25 11:36:52,838 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:36:53] 2025-11-25 11:36:52,841 [wrapper] pilotpid: 9933
[2025-11-25 06:36:53] 2025-11-25 11:36:52,843 [wrapper] Pilot exit status: 0
[2025-11-25 06:36:53] 2025-11-25 11:36:52,853 [wrapper] pandaids: 6895365876
[2025-11-25 06:36:53] 2025-11-25 11:36:52,883 [wrapper] cleanup supervisor_pilot  8672 9934
[2025-11-25 06:36:53] 2025-11-25 11:36:52,886 [wrapper] Test setup, not cleaning
[2025-11-25 06:36:53] 2025-11-25 11:36:52,888 [wrapper] apfmon messages muted
[2025-11-25 06:36:53] 2025-11-25 11:36:52,890 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:36:53] 2025-11-25 11:36:52,892 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:36:53]  *** Error codes and diagnostics ***
[2025-11-25 06:36:53]     "exeErrorCode": 0,
[2025-11-25 06:36:53]     "exeErrorDiag": "",
[2025-11-25 06:36:53]     "pilotErrorCode": 0,
[2025-11-25 06:36:53]     "pilotErrorDiag": "",
[2025-11-25 06:36:53]  *** Listing of results directory ***
[2025-11-25 06:36:53] total 1337824
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 13:11 queuedata.json
[2025-11-25 06:36:53] -rwx------ 1 boincer umatlas     36292 Nov 23 13:11 runpilot2-wrapper.sh
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas       100 Nov 24 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:36:53] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 10:42 run_atlas
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas       105 Nov 24 10:42 job.xml
[2025-11-25 06:36:53] -rw-r--r-- 2 boincer umatlas 410188963 Nov 24 10:42 EVNT.47483658._000837.pool.root.1
[2025-11-25 06:36:53] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 10:42 start_atlas.sh
[2025-11-25 06:36:53] drwxrwx--x 2 boincer umatlas      4096 Nov 24 10:42 shared
[2025-11-25 06:36:53] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 10:42 input.tar.gz
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas         0 Nov 24 10:42 boinc_lockfile
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 10:42 pandaJob.out
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas        57 Nov 24 10:42 setup.sh.local
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas    987541 Nov 24 10:42 agis_schedconf.cvmfs.json
[2025-11-25 06:36:53] drwx------ 5 boincer umatlas      4096 Nov 24 10:42 pilot3
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas       533 Nov 25 06:20 boinc_task_state.xml
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 06:28 init_data.xml
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas 931349645 Nov 25 06:35 HITS.47556137._008239.pool.root.1
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas      1068 Nov 25 06:35 memory_monitor_summary.json
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas   1516240 Nov 25 06:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas   2332337 Nov 25 06:35 log.47556137._008239.job.log.tgz.1
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas      8675 Nov 25 06:35 heartbeat.json
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas        95 Nov 25 06:36 pilot_heartbeat.json
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 06:36 boinc_mmap_file
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas        29 Nov 25 06:36 wrapper_checkpoint.txt
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas      4820 Nov 25 06:36 pilotlog.txt
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas   9903517 Nov 25 06:36 log.47556137._008239.job.log.1
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas       353 Nov 25 06:36 output.list
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas       620 Nov 25 06:36 runtime_log
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas  12257280 Nov 25 06:36 result.tar.gz
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas       668 Nov 25 06:36 SDnKDmkjTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr5KKDmoYXwqn.diag
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 06:36 runtime_log.err
[2025-11-25 06:36:53] -rw-r--r-- 1 boincer umatlas     21289 Nov 25 06:36 stderr.txt
[2025-11-25 06:36:53] HITS file was successfully produced:
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas 931349645 Nov 25 06:35 shared/HITS.pool.root.1
[2025-11-25 06:36:53]  *** Contents of shared directory: ***
[2025-11-25 06:36:53] total 1322676
[2025-11-25 06:36:53] -rw-r--r-- 2 boincer umatlas 410188963 Nov 24 10:42 ATLAS.root_0
[2025-11-25 06:36:53] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 10:42 start_atlas.sh
[2025-11-25 06:36:53] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 10:42 input.tar.gz
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas 931349645 Nov 25 06:35 HITS.pool.root.1
[2025-11-25 06:36:53] -rw------- 1 boincer umatlas  12257280 Nov 25 06:36 result.tar.gz
06:36:54 (6244): run_atlas exited; CPU time 549082.463644
06:36:54 (6244): called boinc_finish(0)

</stderr_txt>
]]>

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