Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:05:24 (8851): wrapper (7.7.26015): starting
10:05:24 (8851): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 10:05:24] Arguments: --nthreads 8
[2025-11-24 10:05:24] Threads: 8
[2025-11-24 10:05:24] Checking for CVMFS
[2025-11-24 10:05:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:05:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:05:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:05:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:05:25] 2.11.2.0 26213 62884 84116 153248 1 81 14551604 20275200 1 130560 0 15408485 99.837 3585030 30236 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 10:05:25] CVMFS is ok
[2025-11-24 10:05:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:05:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:05:25] Further information can be found at the LHC@home message board.
[2025-11-24 10:05:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:05:25] Checking for apptainer binary...
[2025-11-24 10:05:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:05:25] Running /usr/bin/apptainer --version
[2025-11-24 10:05:25] apptainer version 1.3.2-1.el7
[2025-11-24 10:05:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:05:26] c-115-4.aglt2.org
[2025-11-24 10:05:26] apptainer works
[2025-11-24 10:05:26] Set ATHENA_PROC_NUMBER=8
[2025-11-24 10:05:26] Set ATHENA_CORE_NUMBER=8
[2025-11-24 10:05:26] Starting ATLAS job with PandaID=6895355314
[2025-11-24 10:05:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:05:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:05:54] 2025-11-25 02:05:19,218 | INFO     | monitor loop #2889: job 0:6895355314 is in state 'finished'
[2025-11-24 21:05:54] 2025-11-25 02:05:19,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,370 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 21:05:54] 2025-11-25 02:05:19,376 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1778.875
[2025-11-24 21:05:54] 2025-11-25 02:05:19,379 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355314/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,380 | INFO     | extracted standard info from prmon json
[2025-11-24 21:05:54] 2025-11-25 02:05:19,380 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:05:54] 2025-11-25 02:05:19,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:05:54] 2025-11-25 02:05:19,391 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:05:54] 2025-11-25 02:05:19,392 | INFO     | sum of square deviations: 84764620360.74887
[2025-11-24 21:05:54] 2025-11-25 02:05:19,400 | INFO     | sum of deviations: 597715546766.1083
[2025-11-24 21:05:54] 2025-11-25 02:05:19,400 | INFO     | mean x: 1764016539.6733437
[2025-11-24 21:05:54] 2025-11-25 02:05:19,400 | INFO     | mean y: 3082383.5901386747
[2025-11-24 21:05:54] 2025-11-25 02:05:19,401 | INFO     | intersect: -12435835009.397472
[2025-11-24 21:05:54] 2025-11-25 02:05:19,401 | INFO     | chi2: 6.7276110489746
[2025-11-24 21:05:54] 2025-11-25 02:05:19,402 | INFO     | sum of square deviations: 82820698588.46434
[2025-11-24 21:05:54] 2025-11-25 02:05:19,410 | INFO     | sum of deviations: 853518192536.6779
[2025-11-24 21:05:54] 2025-11-25 02:05:19,410 | INFO     | mean x: 1764016387.1785715
[2025-11-24 21:05:54] 2025-11-25 02:05:19,410 | INFO     | mean y: 3102453.3245341615
[2025-11-24 21:05:54] 2025-11-25 02:05:19,410 | INFO     | intersect: -18176170410.228016
[2025-11-24 21:05:54] 2025-11-25 02:05:19,411 | INFO     | chi2: 2.999080936412625
[2025-11-24 21:05:54] 2025-11-25 02:05:19,411 | INFO     | current chi2=2.999080936412625 (change=55.42130907122321 %)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,412 | INFO     | sum of square deviations: 80906730866.14388
[2025-11-24 21:05:54] 2025-11-25 02:05:19,419 | INFO     | sum of deviations: 937616591344.9946
[2025-11-24 21:05:54] 2025-11-25 02:05:19,420 | INFO     | mean x: 1764016234.683881
[2025-11-24 21:05:54] 2025-11-25 02:05:19,420 | INFO     | mean y: 3109139.7276995303
[2025-11-24 21:05:54] 2025-11-25 02:05:19,420 | INFO     | intersect: -20439823992.47294
[2025-11-24 21:05:54] 2025-11-25 02:05:19,420 | INFO     | chi2: 2.403722136895686
[2025-11-24 21:05:54] 2025-11-25 02:05:19,421 | INFO     | current chi2=2.403722136895686 (change=19.85137487583387 %)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,421 | INFO     | right removable region: 638
[2025-11-24 21:05:54] 2025-11-25 02:05:19,421 | INFO     | sum of square deviations: 82820432018.46423
[2025-11-24 21:05:54] 2025-11-25 02:05:19,429 | INFO     | sum of deviations: 407554695650.57184
[2025-11-24 21:05:54] 2025-11-25 02:05:19,429 | INFO     | mean x: 1764016692.1785715
[2025-11-24 21:05:54] 2025-11-25 02:05:19,429 | INFO     | mean y: 3097273.5776397516
[2025-11-24 21:05:54] 2025-11-25 02:05:19,430 | INFO     | intersect: -8677529820.266605
[2025-11-24 21:05:54] 2025-11-25 02:05:19,430 | INFO     | chi2: 4.538488806107123
[2025-11-24 21:05:54] 2025-11-25 02:05:19,430 | INFO     | current chi2=4.538488806107123 (change=32.53936987336887 %)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,431 | INFO     | sum of square deviations: 80906236766.51025
[2025-11-24 21:05:54] 2025-11-25 02:05:19,439 | INFO     | sum of deviations: 360806929221.33167
[2025-11-24 21:05:54] 2025-11-25 02:05:19,439 | INFO     | mean x: 1764016844.682316
[2025-11-24 21:05:54] 2025-11-25 02:05:19,439 | INFO     | mean y: 3100996.1001564944
[2025-11-24 21:05:54] 2025-11-25 02:05:19,439 | INFO     | intersect: -7863653487.3809595
[2025-11-24 21:05:54] 2025-11-25 02:05:19,440 | INFO     | chi2: 4.47057301077094
[2025-11-24 21:05:54] 2025-11-25 02:05:19,440 | INFO     | current chi2=4.47057301077094 (change=1.4964407369429724 %)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,440 | INFO     | left removable region: 20
[2025-11-24 21:05:54] 2025-11-25 02:05:19,441 | INFO     | sum of square deviations: 73189003873.91603
[2025-11-24 21:05:54] 2025-11-25 02:05:19,448 | INFO     | sum of deviations: 632475928731.3922
[2025-11-24 21:05:54] 2025-11-25 02:05:19,448 | INFO     | mean x: 1764016814.197411
[2025-11-24 21:05:54] 2025-11-25 02:05:19,448 | INFO     | mean y: 3133706.1197411004
[2025-11-24 21:05:54] 2025-11-25 02:05:19,448 | INFO     | intersect: -15240934580.139925
[2025-11-24 21:05:54] 2025-11-25 02:05:19,449 | INFO     | chi2: 0.07999773185577358
[2025-11-24 21:05:54] 2025-11-25 02:05:19,449 | INFO     | current memory leak: 8.64 B/s (using 618 data points, chi2=0.08)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | could have reported an average CPU frequency of 2407 MHz (25 samples)
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | ..............................
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | . Timing measurements:
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | . get job = 0 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | . initial setup = 2 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | . payload setup = 9 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | . stage-in = 0 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,450 | INFO     | . payload execution = 39533 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,451 | INFO     | . stage-out = 3 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,451 | INFO     | . log creation = 0 s
[2025-11-24 21:05:54] 2025-11-25 02:05:19,451 | INFO     | ..............................
[2025-11-24 21:05:54] 2025-11-25 02:05:19,940 | INFO     | PID=12615 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 21:05:54] 2025-11-25 02:05:20,016 | INFO     | 
[2025-11-24 21:05:54] 2025-11-25 02:05:20,016 | INFO     | job summary report
[2025-11-24 21:05:54] 2025-11-25 02:05:20,016 | INFO     | --------------------------------------------------
[2025-11-24 21:05:54] 2025-11-25 02:05:20,016 | INFO     | PanDA job id: 6895355314
[2025-11-24 21:05:54] 2025-11-25 02:05:20,017 | INFO     | task id: 47556149
[2025-11-24 21:05:54] 2025-11-25 02:05:20,017 | INFO     | errors: (none)
[2025-11-24 21:05:54] 2025-11-25 02:05:20,017 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:05:54] 2025-11-25 02:05:20,017 | INFO     | pilot state: finished 
[2025-11-24 21:05:54] 2025-11-25 02:05:20,017 | INFO     | transexitcode: 0
[2025-11-24 21:05:54] 2025-11-25 02:05:20,018 | INFO     | exeerrorcode: 0
[2025-11-24 21:05:54] 2025-11-25 02:05:20,018 | INFO     | exeerrordiag: 
[2025-11-24 21:05:54] 2025-11-25 02:05:20,018 | INFO     | exitcode: 0
[2025-11-24 21:05:54] 2025-11-25 02:05:20,018 | INFO     | exitmsg: OK
[2025-11-24 21:05:54] 2025-11-25 02:05:20,018 | INFO     | cpuconsumptiontime: 308098 s
[2025-11-24 21:05:54] 2025-11-25 02:05:20,018 | INFO     | nevents: 1000
[2025-11-24 21:05:54] 2025-11-25 02:05:20,019 | INFO     | neventsw: 0
[2025-11-24 21:05:54] 2025-11-25 02:05:20,019 | INFO     | pid: 19056
[2025-11-24 21:05:54] 2025-11-25 02:05:20,019 | INFO     | pgrp: 19056
[2025-11-24 21:05:54] 2025-11-25 02:05:20,019 | INFO     | corecount: 8
[2025-11-24 21:05:54] 2025-11-25 02:05:20,019 | INFO     | event service: False
[2025-11-24 21:05:54] 2025-11-25 02:05:20,019 | INFO     | sizes: {0: 2284087, 1: 2284286, 7: 2284548, 11: 2284576, 39546: 2327914, 39547: 2327913, 39551: 2337091, 39552: 2337147, 39559: 2337457}
[2025-11-24 21:05:54] 2025-11-25 02:05:20,020 | INFO     | --------------------------------------------------
[2025-11-24 21:05:54] 2025-11-25 02:05:20,020 | INFO     | 
[2025-11-24 21:05:54] 2025-11-25 02:05:20,020 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 21:05:54] 2025-11-25 02:05:20,050 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,051 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,051 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,051 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,052 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,052 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,052 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,053 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:05:54] 2025-11-25 02:05:20,054 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,054 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:05:54] 2025-11-25 02:05:20,054 | INFO     | job 6895355314 has completed (purged errors)
[2025-11-24 21:05:54] 2025-11-25 02:05:20,054 | INFO     | overall cleanup function is called
[2025-11-24 21:05:54] 2025-11-25 02:05:21,070 | INFO     | --- collectZombieJob: --- 10, [19056]
[2025-11-24 21:05:54] 2025-11-25 02:05:21,072 | INFO     | zombie collector waiting for pid 19056
[2025-11-24 21:05:54] 2025-11-25 02:05:21,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:05:54] 2025-11-25 02:05:21,072 | INFO     | collected zombie processes
[2025-11-24 21:05:54] 2025-11-25 02:05:21,073 | INFO     | will attempt to kill all subprocesses of pid=19056
[2025-11-24 21:05:54] 2025-11-25 02:05:21,161 | INFO     | process IDs to be killed: [19056] (in reverse order)
[2025-11-24 21:05:54] 2025-11-25 02:05:21,219 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:05:54] 2025-11-25 02:05:21,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:05:54] 2025-11-25 02:05:21,223 | INFO     | did not find any defunct processes belonging to 19056
[2025-11-24 21:05:54] 2025-11-25 02:05:21,226 | INFO     | did not find any defunct processes belonging to 19056
[2025-11-24 21:05:54] 2025-11-25 02:05:21,229 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:05:54] 2025-11-25 02:05:21,229 | INFO     | ready for new job
[2025-11-24 21:05:54] 2025-11-25 02:05:21,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:05:54] 2025-11-25 02:05:21,233 | INFO     | ***************************************
[2025-11-24 21:05:54] 2025-11-25 02:05:21,233 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:05:54] 2025-11-25 02:05:21,233 | INFO     | ***************************************
[2025-11-24 21:05:54] 2025-11-25 02:05:21,233 | INFO     | 
[2025-11-24 21:05:54] 2025-11-25 02:05:21,234 | INFO     | architecture information:
[2025-11-24 21:05:54] 2025-11-25 02:05:21,234 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:05:54] 2025-11-25 02:05:21,254 | INFO     | cat /etc/os-release:
[2025-11-24 21:05:54] NAME="CentOS Linux"
[2025-11-24 21:05:54] VERSION="7 (Core)"
[2025-11-24 21:05:54] ID="centos"
[2025-11-24 21:05:54] ID_LIKE="rhel fedora"
[2025-11-24 21:05:54] VERSION_ID="7"
[2025-11-24 21:05:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:05:54] ANSI_COLOR="0;31"
[2025-11-24 21:05:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:05:54] HOME_URL="https://www.centos.org/"
[2025-11-24 21:05:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:05:54] 
[2025-11-24 21:05:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:05:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:05:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:05:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:05:54] 
[2025-11-24 21:05:54] 2025-11-25 02:05:21,254 | INFO     | ***************************************
[2025-11-24 21:05:54] 2025-11-25 02:05:21,758 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 21:05:54] 2025-11-25 02:05:21,780 | INFO     | sufficient remaining disk space (17486053376 B)
[2025-11-24 21:05:54] 2025-11-25 02:05:21,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:05:54] 2025-11-25 02:05:21,781 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:05:54] 2025-11-25 02:05:21,781 | INFO     | update_server=False
[2025-11-24 21:05:54] 2025-11-25 02:05:21,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:05:54] 2025-11-25 02:05:21,880 | INFO     | all payload control threads have been joined
[2025-11-24 21:05:54] 2025-11-25 02:05:22,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:05:54] 2025-11-25 02:05:22,212 | INFO     | all job control threads have been joined
[2025-11-24 21:05:54] 2025-11-25 02:05:22,327 | INFO     | all data control threads have been joined
[2025-11-24 21:05:54] 2025-11-25 02:05:22,753 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:05:54] 2025-11-25 02:05:22,754 | INFO     | aborting loop
[2025-11-24 21:05:54] 2025-11-25 02:05:22,787 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:22,886 | INFO     | [payload] control thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:22,902 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,019 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,141 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,218 | INFO     | [job] control thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,333 | INFO     | [data] control thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:05:54] 2025-11-25 02:05:23,518 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,522 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,532 | INFO     | [job] validate thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:23,757 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:24,051 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:24,147 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:24,543 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:05:54] 2025-11-25 02:05:25,549 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:27,348 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:05:54] 2025-11-25 02:05:47,937 [wrapper] supervise_pilot (15 min periods counter: 45)
[2025-11-24 21:05:54] 2025-11-25 02:05:49,027 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:05:54] 2025-11-25 02:05:49,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898420188992)>', '<ExcThread(monitor, started 139897553811200)>']
[2025-11-24 21:05:54] 2025-11-25 02:05:52,157 | INFO     | PID=12615 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 21:05:54] 2025-11-25 02:05:52,157 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:05:54] 2025-11-25 02:05:52,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:05:54] 2025-11-25 02:05:52,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:05:54] 2025-11-25 02:05:52,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:05:54] 2025-11-25 02:05:52,158 | INFO     | [monitor] control thread has ended
[2025-11-24 21:05:54] 2025-11-25 02:05:54,391 | INFO     | all workflow threads have been joined
[2025-11-24 21:05:54] 2025-11-25 02:05:54,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:05:54] 2025-11-25 02:05:54,392 | INFO     | traces error code: 0
[2025-11-24 21:05:54] 2025-11-25 02:05:54,393 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:05:54] 2025-11-25 02:05:54,511 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:05:54] 2025-11-25 02:05:54,516 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:05:54] 2025-11-25 02:05:54,520 [wrapper] pilotpid: 12615
[2025-11-24 21:05:54] 2025-11-25 02:05:54,525 [wrapper] Pilot exit status: 0
[2025-11-24 21:05:54] 2025-11-25 02:05:54,544 [wrapper] pandaids: 6895355314
[2025-11-24 21:05:54] 2025-11-25 02:05:54,588 [wrapper] cleanup supervisor_pilot 23909 12616
[2025-11-24 21:05:54] 2025-11-25 02:05:54,593 [wrapper] Test setup, not cleaning
[2025-11-24 21:05:54] 2025-11-25 02:05:54,598 [wrapper] apfmon messages muted
[2025-11-24 21:05:54] 2025-11-25 02:05:54,602 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:05:54] 2025-11-25 02:05:54,607 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:05:54]  *** Error codes and diagnostics ***
[2025-11-24 21:05:54]     "exeErrorCode": 0,
[2025-11-24 21:05:54]     "exeErrorDiag": "",
[2025-11-24 21:05:54]     "pilotErrorCode": 0,
[2025-11-24 21:05:54]     "pilotErrorDiag": "",
[2025-11-24 21:05:54]  *** Listing of results directory ***
[2025-11-24 21:05:54] total 1308936
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 01:48 pilot3.tar.gz
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 02:06 queuedata.json
[2025-11-24 21:05:54] -rwx------ 1 boincer umatlas     36292 Nov 23 02:06 runpilot2-wrapper.sh
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas       100 Nov 24 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:05:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 10:05 run_atlas
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas       105 Nov 24 10:05 job.xml
[2025-11-24 21:05:54] -rw-r--r-- 2 boincer umatlas 407565756 Nov 24 10:05 EVNT.47483658._001146.pool.root.1
[2025-11-24 21:05:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 10:05 start_atlas.sh
[2025-11-24 21:05:54] drwxrwx--x 2 boincer umatlas      4096 Nov 24 10:05 shared
[2025-11-24 21:05:54] -rw-r--r-- 2 boincer umatlas    590104 Nov 24 10:05 input.tar.gz
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas         0 Nov 24 10:05 boinc_lockfile
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas      2784 Nov 24 10:05 pandaJob.out
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas        57 Nov 24 10:05 setup.sh.local
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas    988283 Nov 24 10:05 agis_schedconf.cvmfs.json
[2025-11-24 21:05:54] drwx------ 5 boincer umatlas      4096 Nov 24 10:05 pilot3
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas       532 Nov 24 20:55 boinc_task_state.xml
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas      5912 Nov 24 21:01 init_data.xml
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas 914140104 Nov 24 21:04 HITS.47556149._001322.pool.root.1
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas      1064 Nov 24 21:05 memory_monitor_summary.json
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas   1516227 Nov 24 21:05 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas   1909203 Nov 24 21:05 log.47556149._001322.job.log.tgz.1
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas        95 Nov 24 21:05 pilot_heartbeat.json
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas      8667 Nov 24 21:05 heartbeat.json
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 21:05 boinc_mmap_file
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas        29 Nov 24 21:05 wrapper_checkpoint.txt
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas      4746 Nov 24 21:05 pilotlog.txt
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas   5452590 Nov 24 21:05 log.47556149._001322.job.log.1
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas       353 Nov 24 21:05 output.list
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas       620 Nov 24 21:05 runtime_log
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas   7383040 Nov 24 21:05 result.tar.gz
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 21:05 runtime_log.err
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas       666 Nov 24 21:05 laHODmQMJh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8SIKDmQNr2So.diag
[2025-11-24 21:05:54] -rw-r--r-- 1 boincer umatlas     21402 Nov 24 21:05 stderr.txt
[2025-11-24 21:05:54] HITS file was successfully produced:
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas 914140104 Nov 24 21:04 shared/HITS.pool.root.1
[2025-11-24 21:05:54]  *** Contents of shared directory: ***
[2025-11-24 21:05:54] total 1298544
[2025-11-24 21:05:54] -rw-r--r-- 2 boincer umatlas 407565756 Nov 24 10:05 ATLAS.root_0
[2025-11-24 21:05:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 10:05 start_atlas.sh
[2025-11-24 21:05:54] -rw-r--r-- 2 boincer umatlas    590104 Nov 24 10:05 input.tar.gz
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas 914140104 Nov 24 21:04 HITS.pool.root.1
[2025-11-24 21:05:54] -rw------- 1 boincer umatlas   7383040 Nov 24 21:05 result.tar.gz
21:05:55 (8851): run_atlas exited; CPU time 306432.487099
21:05:55 (8851): called boinc_finish(0)

</stderr_txt>
]]>

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