Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:47 (3635371): wrapper (7.7.26015): starting
00:01:47 (3635371): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:01:47] Arguments: --nthreads 12
[2025-11-25 00:01:47] Threads: 12
[2025-11-25 00:01:47] Checking for CVMFS
[2025-11-25 00:01:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:51] 2.13.2.0 6111 32551 269732 153270 2 64 31474511 40960000 13927 16776704 0 32473941 99.737 21234323 38549 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:01:51] CVMFS is ok
[2025-11-25 00:01:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:51] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:51] Checking for apptainer binary...
[2025-11-25 00:01:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:51] Running /usr/bin/apptainer --version
[2025-11-25 00:01:51] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:52] c-210-35-3.aglt2.org
[2025-11-25 00:01:52] apptainer works
[2025-11-25 00:01:52] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:01:52] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:01:52] Starting ATLAS job with PandaID=6895355323
[2025-11-25 00:01:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:40:00]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:40:00] 2025-11-26 01:39:03,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:40:00] 2025-11-26 01:39:04,413 | INFO     | time since job start (74129s) is within the limit (172800.0s)
[2025-11-25 20:40:00] 2025-11-26 01:39:05,605 | INFO     | monitor loop #4384: job 0:6895355323 is in state 'finished'
[2025-11-25 20:40:00] 2025-11-26 01:39:05,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:40:00] 2025-11-26 01:39:06,428 | INFO     | time since job start (74131s) is within the limit (172800.0s)
[2025-11-25 20:40:00] 2025-11-26 01:39:08,152 | INFO     | monitor loop #4385: job 0:6895355323 is in state 'finished'
[2025-11-25 20:40:00] 2025-11-26 01:39:08,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:40:00] 2025-11-26 01:39:08,435 | INFO     | time since job start (74133s) is within the limit (172800.0s)
[2025-11-25 20:40:00] 2025-11-26 01:39:10,442 | INFO     | time since job start (74135s) is within the limit (172800.0s)
[2025-11-25 20:40:00] 2025-11-26 01:39:10,656 | INFO     | monitor loop #4386: job 0:6895355323 is in state 'finished'
[2025-11-25 20:40:00] 2025-11-26 01:39:10,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:40:00] 2025-11-26 01:39:12,451 | INFO     | time since job start (74137s) is within the limit (172800.0s)
[2025-11-25 20:40:00] 2025-11-26 01:39:13,162 | INFO     | monitor loop #4387: job 0:6895355323 is in state 'finished'
[2025-11-25 20:40:00] 2025-11-26 01:39:13,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:40:00] 2025-11-26 01:39:13,982 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 20:40:00] 2025-11-26 01:39:13,991 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2539.270910714286
[2025-11-25 20:40:00] 2025-11-26 01:39:14,015 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895355323/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:40:00] 2025-11-26 01:39:14,016 | INFO     | extracted standard info from prmon json
[2025-11-25 20:40:00] 2025-11-26 01:39:14,016 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:40:00] 2025-11-26 01:39:14,017 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:40:00] 2025-11-26 01:39:14,064 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:40:00] 2025-11-26 01:39:14,066 | INFO     | sum of square deviations: 552407981044.8408
[2025-11-25 20:40:00] 2025-11-26 01:39:14,268 | INFO     | sum of deviations: 6411181400972.242
[2025-11-25 20:40:00] 2025-11-26 01:39:14,269 | INFO     | mean x: 1764084158.1080859
[2025-11-25 20:40:00] 2025-11-26 01:39:14,269 | INFO     | mean y: 3444806.6699669966
[2025-11-25 20:40:00] 2025-11-26 01:39:14,269 | INFO     | intersect: -20470306356.049522
[2025-11-25 20:40:00] 2025-11-26 01:39:14,270 | INFO     | chi2: 18.96315670392885
[2025-11-25 20:40:00] 2025-11-26 01:39:14,299 | INFO     | sum of square deviations: 545603559754.0702
[2025-11-25 20:40:00] 2025-11-26 01:39:14,484 | INFO     | time since job start (74139s) is within the limit (172800.0s)
[2025-11-25 20:40:00] 2025-11-26 01:39:14,576 | INFO     | sum of deviations: 6918468819866.6875
[2025-11-25 20:40:00] 2025-11-26 01:39:14,577 | INFO     | mean x: 1764084005.6064622
[2025-11-25 20:40:00] 2025-11-26 01:39:14,577 | INFO     | mean y: 3456175.2709196354
[2025-11-25 20:40:00] 2025-11-26 01:39:14,577 | INFO     | intersect: -22365826374.70935
[2025-11-25 20:40:00] 2025-11-26 01:39:14,578 | INFO     | chi2: 15.4444779224972
[2025-11-25 20:40:00] 2025-11-26 01:39:14,579 | INFO     | current chi2=15.4444779224972 (change=18.55534306006467 %)
[2025-11-25 20:40:00] 2025-11-26 01:39:14,579 | INFO     | right removable region: 1206
[2025-11-25 20:40:00] 2025-11-26 01:39:14,611 | INFO     | sum of square deviations: 545599116961.0483
[2025-11-25 20:40:00] 2025-11-26 01:39:14,712 | INFO     | sum of deviations: 5832435259676.672
[2025-11-25 20:40:00] 2025-11-26 01:39:14,712 | INFO     | mean x: 1764084310.6594863
[2025-11-25 20:40:00] 2025-11-26 01:39:14,712 | INFO     | mean y: 3457771.347141674
[2025-11-25 20:40:00] 2025-11-26 01:39:14,713 | INFO     | intersect: -18854541104.899857
[2025-11-25 20:40:00] 2025-11-26 01:39:14,714 | INFO     | chi2: 14.878981883151356
[2025-11-25 20:40:00] 2025-11-26 01:39:14,714 | INFO     | current chi2=14.878981883151356 (change=21.537420612736486 %)
[2025-11-25 20:40:00] 2025-11-26 01:39:14,714 | INFO     | left removable region: 10
[2025-11-25 20:40:00] 2025-11-26 01:39:14,716 | INFO     | sum of square deviations: 530822208426.90424
[2025-11-25 20:40:00] 2025-11-26 01:39:14,744 | INFO     | sum of deviations: 5912409716761.645
[2025-11-25 20:40:00] 2025-11-26 01:39:14,744 | INFO     | mean x: 1764084280.2107024
[2025-11-25 20:40:00] 2025-11-26 01:39:14,744 | INFO     | mean y: 3483349.4657190638
[2025-11-25 20:40:00] 2025-11-26 01:39:14,745 | INFO     | intersect: -19645259438.46997
[2025-11-25 20:40:00] 2025-11-26 01:39:14,746 | INFO     | chi2: 7.476573724305605
[2025-11-25 20:40:00] 2025-11-26 01:39:14,746 | INFO     | current memory leak: 11.14 B/s (using 1196 data points, chi2=7.48)
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | could have reported an average CPU frequency of 2632 MHz (44 samples)
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | ..............................
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . Timing measurements:
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . get job = 1 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . initial setup = 6 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . payload setup = 65 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . stage-in = 0 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . payload execution = 73948 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . stage-out = 6 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,748 | INFO     | . log creation = 1 s
[2025-11-25 20:40:00] 2025-11-26 01:39:14,749 | INFO     | ..............................
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | 
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | job summary report
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | --------------------------------------------------
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | PanDA job id: 6895355323
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | task id: 47556137
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | errors: (none)
[2025-11-25 20:40:00] 2025-11-26 01:39:15,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | pilot state: finished 
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | transexitcode: 0
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | exeerrorcode: 0
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | exeerrordiag: 
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | exitcode: 0
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | exitmsg: OK
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | cpuconsumptiontime: 258883 s
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | nevents: 1000
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | neventsw: 0
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | pid: 3650889
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | pgrp: 3650889
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | corecount: 12
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | event service: False
[2025-11-25 20:40:00] 2025-11-26 01:39:15,186 | INFO     | sizes: {0: 2284138, 1: 2284337, 2: 2284337, 14: 2284365, 25: 2284393, 36: 2284421, 46: 2284839, 48: 2284867, 74017: 2344061, 74018: 2344060, 74025: 2353115, 74026:
[2025-11-25 20:40:00] 2025-11-26 01:39:15,187 | INFO     | --------------------------------------------------
[2025-11-25 20:40:00] 2025-11-26 01:39:15,187 | INFO     | 
[2025-11-25 20:40:00] 2025-11-26 01:39:15,187 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 20:40:00] 2025-11-26 01:39:15,305 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:40:00] 2025-11-26 01:39:15,307 | INFO     | job 6895355323 has completed (purged errors)
[2025-11-25 20:40:00] 2025-11-26 01:39:15,308 | INFO     | overall cleanup function is called
[2025-11-25 20:40:00] 2025-11-26 01:39:16,349 | INFO     | --- collectZombieJob: --- 10, [3650889]
[2025-11-25 20:40:00] 2025-11-26 01:39:16,349 | INFO     | zombie collector waiting for pid 3650889
[2025-11-25 20:40:00] 2025-11-26 01:39:16,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:40:00] 2025-11-26 01:39:16,349 | INFO     | collected zombie processes
[2025-11-25 20:40:00] 2025-11-26 01:39:16,349 | INFO     | will attempt to kill all subprocesses of pid=3650889
[2025-11-25 20:40:00] 2025-11-26 01:39:17,171 | INFO     | process IDs to be killed: [3650889] (in reverse order)
[2025-11-25 20:40:00] 2025-11-26 01:39:17,311 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:40:00] 2025-11-26 01:39:17,315 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:40:00] 2025-11-26 01:39:17,324 | INFO     | did not find any defunct processes belonging to 3650889
[2025-11-25 20:40:00] 2025-11-26 01:39:17,333 | INFO     | did not find any defunct processes belonging to 3650889
[2025-11-25 20:40:00] 2025-11-26 01:39:17,335 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:40:00] 2025-11-26 01:39:17,335 | INFO     | ready for new job
[2025-11-25 20:40:00] 2025-11-26 01:39:17,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:40:00] 2025-11-26 01:39:17,340 | INFO     | ***************************************
[2025-11-25 20:40:00] 2025-11-26 01:39:17,341 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:40:00] 2025-11-26 01:39:17,341 | INFO     | ***************************************
[2025-11-25 20:40:00] 2025-11-26 01:39:17,341 | INFO     | 
[2025-11-25 20:40:00] 2025-11-26 01:39:17,344 | INFO     | architecture information:
[2025-11-25 20:40:00] 2025-11-26 01:39:17,345 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:40:00] 2025-11-26 01:39:17,365 | INFO     | cat /etc/os-release:
[2025-11-25 20:40:00] NAME="CentOS Linux"
[2025-11-25 20:40:00] VERSION="7 (Core)"
[2025-11-25 20:40:00] ID="centos"
[2025-11-25 20:40:00] ID_LIKE="rhel fedora"
[2025-11-25 20:40:00] VERSION_ID="7"
[2025-11-25 20:40:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:40:00] ANSI_COLOR="0;31"
[2025-11-25 20:40:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:40:00] HOME_URL="https://www.centos.org/"
[2025-11-25 20:40:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:40:00] 
[2025-11-25 20:40:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:40:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:40:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:40:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:40:00] 
[2025-11-25 20:40:00] 2025-11-26 01:39:17,366 | INFO     | ***************************************
[2025-11-25 20:40:00] 2025-11-26 01:39:17,869 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 20:40:00] 2025-11-26 01:39:17,961 | INFO     | sufficient remaining disk space (71567409152 B)
[2025-11-25 20:40:00] 2025-11-26 01:39:17,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:40:00] 2025-11-26 01:39:17,962 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:40:00] 2025-11-26 01:39:17,962 | INFO     | update_server=False
[2025-11-25 20:40:00] 2025-11-26 01:39:17,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:40:00] 2025-11-26 01:39:17,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:40:00] 2025-11-26 01:39:18,196 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 20:40:00] 2025-11-26 01:39:18,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 20:40:00] 2025-11-26 01:39:18,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:40:00] 2025-11-26 01:39:18,197 | INFO     | will abort loop
[2025-11-25 20:40:00] 2025-11-26 01:39:18,391 | INFO     | all data control threads have been joined
[2025-11-25 20:40:00] 2025-11-26 01:39:18,442 | INFO     | all payload control threads have been joined
[2025-11-25 20:40:00] 2025-11-26 01:39:18,968 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:18,988 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:18,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,165 | INFO     | all job control threads have been joined
[2025-11-25 20:40:00] 2025-11-26 01:39:19,203 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:40:00] 2025-11-26 01:39:19,397 | INFO     | [data] control thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,407 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,448 | INFO     | [payload] control thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,699 | INFO     | [job] validate thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,705 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,711 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:19,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:40:00] 2025-11-26 01:39:20,171 | INFO     | [job] control thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:20,310 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:20,418 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:20,946 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:21,311 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:21,974 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:40:00] 2025-11-26 01:39:50,209 | INFO     | PID=3643617 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:40:00] 2025-11-26 01:39:50,210 | INFO     | .. there are 10 such processes running
[2025-11-25 20:40:00] 2025-11-26 01:39:50,211 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:40:00] 2025-11-26 01:39:50,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:40:00] 2025-11-26 01:39:50,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:40:00] 2025-11-26 01:39:52,865 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:40:00] 2025-11-26 01:39:53,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139676772710208)>', '<ExcThread(monitor, started 139676119705344)>']
[2025-11-25 20:40:00] 2025-11-26 01:39:54,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:40:00] 2025-11-26 01:39:54,278 | INFO     | [monitor] control thread has ended
[2025-11-25 20:40:00] 2025-11-26 01:39:59,004 | INFO     | all workflow threads have been joined
[2025-11-25 20:40:00] 2025-11-26 01:39:59,004 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:40:00] 2025-11-26 01:39:59,004 | INFO     | traces error code: 0
[2025-11-25 20:40:00] 2025-11-26 01:39:59,005 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:40:00] 2025-11-26 01:40:00,152 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:40:00] 2025-11-26 01:40:00,174 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:40:00] 2025-11-26 01:40:00,189 [wrapper] pilotpid: 3643617
[2025-11-25 20:40:00] 2025-11-26 01:40:00,212 [wrapper] Pilot exit status: 0
[2025-11-25 20:40:00] 2025-11-26 01:40:00,249 [wrapper] pandaids: 6895355323
[2025-11-25 20:40:00] 2025-11-26 01:40:00,312 [wrapper] cleanup supervisor_pilot 1295690 3643618
[2025-11-25 20:40:00] 2025-11-26 01:40:00,316 [wrapper] Test setup, not cleaning
[2025-11-25 20:40:00] 2025-11-26 01:40:00,323 [wrapper] apfmon messages muted
[2025-11-25 20:40:00] 2025-11-26 01:40:00,326 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:40:00] 2025-11-26 01:40:00,331 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:40:00]  *** Error codes and diagnostics ***
[2025-11-25 20:40:00]     "exeErrorCode": 0,
[2025-11-25 20:40:00]     "exeErrorDiag": "",
[2025-11-25 20:40:00]     "pilotErrorCode": 0,
[2025-11-25 20:40:00]     "pilotErrorDiag": "",
[2025-11-25 20:40:00]  *** Listing of results directory ***
[2025-11-25 20:40:00] total 1309376
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 01:48 pilot3.tar.gz
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 02:10 queuedata.json
[2025-11-25 20:40:00] -rwx------. 1 boincer umatlas     36292 Nov 23 02:11 runpilot2-wrapper.sh
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:40:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-25 20:40:00] -rw-r--r--. 2 boincer umatlas 410816228 Nov 25 00:01 EVNT.47483658._000653.pool.root.1
[2025-11-25 20:40:00] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:01 input.tar.gz
[2025-11-25 20:40:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 20:40:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:01 pandaJob.out
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-25 20:40:00] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas       533 Nov 25 20:14 boinc_task_state.xml
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas 902073050 Nov 25 20:37 HITS.47556137._006489.pool.root.1
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 20:38 init_data.xml
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas      1058 Nov 25 20:38 memory_monitor_summary.json
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas   2749378 Nov 25 20:38 log.47556137._006489.job.log.tgz.1
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas      8625 Nov 25 20:39 heartbeat.json
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas        95 Nov 25 20:39 pilot_heartbeat.json
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas      5010 Nov 25 20:39 pilotlog.txt
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:39 boinc_mmap_file
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas        29 Nov 25 20:40 wrapper_checkpoint.txt
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas   9246102 Nov 25 20:40 log.47556137._006489.job.log.1
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas       353 Nov 25 20:40 output.list
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:40 runtime_log
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas  12011520 Nov 25 20:40 result.tar.gz
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas       662 Nov 25 20:40 LSXKDmJRJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYiKKDmEc9y5n.diag
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas      9355 Nov 25 20:40 runtime_log.err
[2025-11-25 20:40:00] -rw-r--r--. 1 boincer umatlas     21811 Nov 25 20:40 stderr.txt
[2025-11-25 20:40:00] HITS file was successfully produced:
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas 902073050 Nov 25 20:37 shared/HITS.pool.root.1
[2025-11-25 20:40:00]  *** Contents of shared directory: ***
[2025-11-25 20:40:00] total 1294456
[2025-11-25 20:40:00] -rw-r--r--. 2 boincer umatlas 410816228 Nov 25 00:01 ATLAS.root_0
[2025-11-25 20:40:00] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:01 input.tar.gz
[2025-11-25 20:40:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas 902073050 Nov 25 20:37 HITS.pool.root.1
[2025-11-25 20:40:00] -rw-------. 1 boincer umatlas  12011520 Nov 25 20:40 result.tar.gz
20:40:02 (3635371): run_atlas exited; CPU time 259237.304613
20:40:02 (3635371): called boinc_finish(0)

</stderr_txt>
]]>

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