Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:47:03 (1347527): wrapper (7.7.26015): starting
17:47:03 (1347527): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 17:47:03] Arguments: --nthreads 8
[2025-11-24 17:47:03] Threads: 8
[2025-11-24 17:47:03] Checking for CVMFS
[2025-11-24 17:47:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 17:47:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 17:47:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 17:47:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 17:47:04] 2.13.2.0 5195 34303 166676 153261 2 386 35663817 40960000 23385 16776704 0 65027416 99.766 35286111 37727 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 17:47:04] CVMFS is ok
[2025-11-24 17:47:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 17:47:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 17:47:04] Further information can be found at the LHC@home message board.
[2025-11-24 17:47:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 17:47:04] Checking for apptainer binary...
[2025-11-24 17:47:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 17:47:04] Running /usr/bin/apptainer --version
[2025-11-24 17:47:04] apptainer version 1.4.4-1.el9
[2025-11-24 17:47:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 17:47:04] c-212-19.aglt2.org
[2025-11-24 17:47:04] apptainer works
[2025-11-24 17:47:04] Set ATHENA_PROC_NUMBER=8
[2025-11-24 17:47:04] Set ATHENA_CORE_NUMBER=8
[2025-11-24 17:47:04] Starting ATLAS job with PandaID=6895355675
[2025-11-24 17:47:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:04:54]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:04:54] 2025-11-25 18:04:03,523 | INFO     | monitor loop #4547: job 0:6895355675 is in state 'finished'
[2025-11-25 13:04:54] 2025-11-25 18:04:03,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:54] 2025-11-25 18:04:04,535 | INFO     | time since job start (69400s) is within the limit (172800.0s)
[2025-11-25 13:04:54] 2025-11-25 18:04:06,028 | INFO     | monitor loop #4548: job 0:6895355675 is in state 'finished'
[2025-11-25 13:04:54] 2025-11-25 18:04:06,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:54] 2025-11-25 18:04:06,548 | INFO     | time since job start (69402s) is within the limit (172800.0s)
[2025-11-25 13:04:54] 2025-11-25 18:04:08,533 | INFO     | monitor loop #4549: job 0:6895355675 is in state 'finished'
[2025-11-25 13:04:54] 2025-11-25 18:04:08,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:54] 2025-11-25 18:04:08,569 | INFO     | time since job start (69404s) is within the limit (172800.0s)
[2025-11-25 13:04:54] 2025-11-25 18:04:10,586 | INFO     | time since job start (69406s) is within the limit (172800.0s)
[2025-11-25 13:04:54] 2025-11-25 18:04:11,038 | INFO     | monitor loop #4550: job 0:6895355675 is in state 'finished'
[2025-11-25 13:04:54] 2025-11-25 18:04:11,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:54] 2025-11-25 18:04:12,615 | INFO     | time since job start (69408s) is within the limit (172800.0s)
[2025-11-25 13:04:54] 2025-11-25 18:04:13,543 | INFO     | monitor loop #4551: job 0:6895355675 is in state 'finished'
[2025-11-25 13:04:54] 2025-11-25 18:04:13,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:54] 2025-11-25 18:04:14,112 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 13:04:54] 2025-11-25 18:04:14,134 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3069.9104270833327
[2025-11-25 13:04:54] 2025-11-25 18:04:14,177 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895355675/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:04:54] 2025-11-25 18:04:14,178 | INFO     | extracted standard info from prmon json
[2025-11-25 13:04:54] 2025-11-25 18:04:14,178 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:04:54] 2025-11-25 18:04:14,178 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:04:54] 2025-11-25 18:04:14,229 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:04:54] 2025-11-25 18:04:14,232 | INFO     | sum of square deviations: 455781387320.8601
[2025-11-25 13:04:54] 2025-11-25 18:04:14,310 | INFO     | sum of deviations: 17064092196892.898
[2025-11-25 13:04:54] 2025-11-25 18:04:14,310 | INFO     | mean x: 1764059131.9683378
[2025-11-25 13:04:54] 2025-11-25 18:04:14,310 | INFO     | mean y: 4907000.025505717
[2025-11-25 13:04:54] 2025-11-25 18:04:14,310 | INFO     | intersect: -66040062158.593025
[2025-11-25 13:04:54] 2025-11-25 18:04:14,312 | INFO     | chi2: 52.88159935278853
[2025-11-25 13:04:54] 2025-11-25 18:04:14,313 | INFO     | sum of square deviations: 449795483226.4018
[2025-11-25 13:04:54] 2025-11-25 18:04:14,409 | INFO     | sum of deviations: 17802706196268.75
[2025-11-25 13:04:54] 2025-11-25 18:04:14,409 | INFO     | mean x: 1764058979.4770317
[2025-11-25 13:04:54] 2025-11-25 18:04:14,409 | INFO     | mean y: 4925814.933745583
[2025-11-25 13:04:54] 2025-11-25 18:04:14,410 | INFO     | intersect: -69815748014.98053
[2025-11-25 13:04:54] 2025-11-25 18:04:14,418 | INFO     | chi2: 47.711393928189345
[2025-11-25 13:04:54] 2025-11-25 18:04:14,418 | INFO     | current chi2=47.711393928189345 (change=9.776946022580061 %)
[2025-11-25 13:04:54] 2025-11-25 18:04:14,418 | INFO     | right removable region: 1131
[2025-11-25 13:04:54] 2025-11-25 18:04:14,419 | INFO     | sum of square deviations: 449794187162.3562
[2025-11-25 13:04:54] 2025-11-25 18:04:14,486 | INFO     | sum of deviations: 16408818709199.98
[2025-11-25 13:04:54] 2025-11-25 18:04:14,486 | INFO     | mean x: 1764059284.4761484
[2025-11-25 13:04:54] 2025-11-25 18:04:14,486 | INFO     | mean y: 4923681.981448763
[2025-11-25 13:04:54] 2025-11-25 18:04:14,486 | INFO     | intersect: -64349240550.029526
[2025-11-25 13:04:54] 2025-11-25 18:04:14,487 | INFO     | chi2: 50.394376000958715
[2025-11-25 13:04:54] 2025-11-25 18:04:14,487 | INFO     | current chi2=50.394376000958715 (change=4.703381482917757 %)
[2025-11-25 13:04:54] 2025-11-25 18:04:14,487 | INFO     | left removable region: 10
[2025-11-25 13:04:54] 2025-11-25 18:04:14,488 | INFO     | sum of square deviations: 436809115666.9279
[2025-11-25 13:04:54] 2025-11-25 18:04:14,542 | INFO     | sum of deviations: 16886086311918.361
[2025-11-25 13:04:54] 2025-11-25 18:04:14,542 | INFO     | mean x: 1764059253.9919715
[2025-11-25 13:04:54] 2025-11-25 18:04:14,542 | INFO     | mean y: 4956903.14897413
[2025-11-25 13:04:54] 2025-11-25 18:04:14,542 | INFO     | intersect: -68189720711.959435
[2025-11-25 13:04:54] 2025-11-25 18:04:14,543 | INFO     | chi2: 43.90073695700969
[2025-11-25 13:04:54] 2025-11-25 18:04:14,543 | INFO     | current memory leak: 38.66 B/s (using 1121 data points, chi2=43.90)
[2025-11-25 13:04:54] 2025-11-25 18:04:14,548 | INFO     | could have reported an average CPU frequency of 3110 MHz (42 samples)
[2025-11-25 13:04:54] 2025-11-25 18:04:14,548 | INFO     | ..............................
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . Timing measurements:
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . get job = 0 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . initial setup = 3 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . payload setup = 10 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . stage-in = 0 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . payload execution = 69355 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . stage-out = 6 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | . log creation = 1 s
[2025-11-25 13:04:54] 2025-11-25 18:04:14,549 | INFO     | ..............................
[2025-11-25 13:04:54] 2025-11-25 18:04:14,692 | INFO     | PID=1351198 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 13:04:54] 2025-11-25 18:04:14,692 | INFO     | .. there are 18 such processes running
[2025-11-25 13:04:54] 2025-11-25 18:04:15,094 | INFO     | 
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | job summary report
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | --------------------------------------------------
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | PanDA job id: 6895355675
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | task id: 47556137
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | errors: (none)
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | pilot state: finished 
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | transexitcode: 0
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | exeerrorcode: 0
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | exeerrordiag: 
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | exitcode: 0
[2025-11-25 13:04:54] 2025-11-25 18:04:15,102 | INFO     | exitmsg: OK
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | cpuconsumptiontime: 213484 s
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | nevents: 1000
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | neventsw: 0
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | pid: 1363091
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | pgrp: 1363091
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | corecount: 8
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | event service: False
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | sizes: {0: 2284138, 1: 2284337, 8: 2284599, 12: 2284627, 69370: 2343116, 69371: 2343115, 69378: 2352354, 69393: 2352544}
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | --------------------------------------------------
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | 
[2025-11-25 13:04:54] 2025-11-25 18:04:15,103 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 13:04:54] 2025-11-25 18:04:15,173 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,173 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,175 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,175 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:04:54] 2025-11-25 18:04:15,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,175 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:04:54] 2025-11-25 18:04:15,175 | INFO     | job 6895355675 has completed (purged errors)
[2025-11-25 13:04:54] 2025-11-25 18:04:15,175 | INFO     | overall cleanup function is called
[2025-11-25 13:04:54] 2025-11-25 18:04:16,259 | INFO     | --- collectZombieJob: --- 10, [1363091]
[2025-11-25 13:04:54] 2025-11-25 18:04:16,259 | INFO     | zombie collector waiting for pid 1363091
[2025-11-25 13:04:54] 2025-11-25 18:04:16,259 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:04:54] 2025-11-25 18:04:16,259 | INFO     | collected zombie processes
[2025-11-25 13:04:54] 2025-11-25 18:04:16,259 | INFO     | will attempt to kill all subprocesses of pid=1363091
[2025-11-25 13:04:54] 2025-11-25 18:04:17,223 | INFO     | process IDs to be killed: [1363091] (in reverse order)
[2025-11-25 13:04:54] 2025-11-25 18:04:17,397 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:04:54] 2025-11-25 18:04:17,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:04:54] 2025-11-25 18:04:17,414 | INFO     | did not find any defunct processes belonging to 1363091
[2025-11-25 13:04:54] 2025-11-25 18:04:17,431 | INFO     | did not find any defunct processes belonging to 1363091
[2025-11-25 13:04:54] 2025-11-25 18:04:17,433 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:04:54] 2025-11-25 18:04:17,433 | INFO     | ready for new job
[2025-11-25 13:04:54] 2025-11-25 18:04:17,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:04:54] 2025-11-25 18:04:17,438 | INFO     | ***************************************
[2025-11-25 13:04:54] 2025-11-25 18:04:17,438 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:04:54] 2025-11-25 18:04:17,438 | INFO     | ***************************************
[2025-11-25 13:04:54] 2025-11-25 18:04:17,438 | INFO     | 
[2025-11-25 13:04:54] 2025-11-25 18:04:17,443 | INFO     | architecture information:
[2025-11-25 13:04:54] 2025-11-25 18:04:17,444 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:04:54] 2025-11-25 18:04:17,496 | INFO     | cat /etc/os-release:
[2025-11-25 13:04:54] NAME="CentOS Linux"
[2025-11-25 13:04:54] VERSION="7 (Core)"
[2025-11-25 13:04:54] ID="centos"
[2025-11-25 13:04:54] ID_LIKE="rhel fedora"
[2025-11-25 13:04:54] VERSION_ID="7"
[2025-11-25 13:04:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:04:54] ANSI_COLOR="0;31"
[2025-11-25 13:04:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:04:54] HOME_URL="https://www.centos.org/"
[2025-11-25 13:04:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:04:54] 
[2025-11-25 13:04:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:04:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:04:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:04:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:04:54] 
[2025-11-25 13:04:54] 2025-11-25 18:04:17,496 | INFO     | ***************************************
[2025-11-25 13:04:54] 2025-11-25 18:04:18,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 13:04:54] 2025-11-25 18:04:18,051 | INFO     | sufficient remaining disk space (122079412224 B)
[2025-11-25 13:04:54] 2025-11-25 18:04:18,071 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:04:54] 2025-11-25 18:04:18,071 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:04:54] 2025-11-25 18:04:18,071 | INFO     | update_server=False
[2025-11-25 13:04:54] 2025-11-25 18:04:18,071 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:04:54] 2025-11-25 18:04:18,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:04:54] 2025-11-25 18:04:18,072 | INFO     | aborting loop
[2025-11-25 13:04:54] 2025-11-25 18:04:18,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:04:54] 2025-11-25 18:04:18,489 | INFO     | all job control threads have been joined
[2025-11-25 13:04:54] 2025-11-25 18:04:18,962 | INFO     | all payload control threads have been joined
[2025-11-25 13:04:54] 2025-11-25 18:04:19,077 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,078 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,098 | INFO     | all data control threads have been joined
[2025-11-25 13:04:54] 2025-11-25 18:04:19,106 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,496 | INFO     | [job] control thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,658 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,663 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,671 | INFO     | [job] validate thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,717 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:04:54] 2025-11-25 18:04:19,846 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:19,968 | INFO     | [payload] control thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:20,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:04:54] 2025-11-25 18:04:20,105 | INFO     | [data] control thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:20,328 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:20,622 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:20,763 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:24,091 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:04:54] 2025-11-25 18:04:24,122 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:04:54] 2025-11-25 18:04:24,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304446027584)>', '<ExcThread(monitor, started 140303965091584)>']
[2025-11-25 13:04:54] 2025-11-25 18:04:29,154 | INFO     | all workflow threads have been joined
[2025-11-25 13:04:54] 2025-11-25 18:04:29,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:04:54] 2025-11-25 18:04:29,171 | INFO     | traces error code: 0
[2025-11-25 13:04:54] 2025-11-25 18:04:29,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:04:54] 2025-11-25 18:04:51,066 | INFO     | PID=1351198 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:04:54] 2025-11-25 18:04:51,067 | INFO     | .. there are 18 such processes running
[2025-11-25 13:04:54] 2025-11-25 18:04:51,067 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:04:54] 2025-11-25 18:04:51,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:04:54] 2025-11-25 18:04:51,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:04:54] 2025-11-25 18:04:51,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:04:54] 2025-11-25 18:04:51,068 | INFO     | [monitor] control thread has ended
[2025-11-25 13:04:54] 2025-11-25 18:04:52,897 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:04:54] 2025-11-25 18:04:52,917 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:04:54] 2025-11-25 18:04:52,960 [wrapper] pilotpid: 1351198
[2025-11-25 13:04:54] 2025-11-25 18:04:53,014 [wrapper] Pilot exit status: 0
[2025-11-25 13:04:54] 2025-11-25 18:04:53,087 [wrapper] pandaids: 6895355675
[2025-11-25 13:04:54] 2025-11-25 18:04:53,349 [wrapper] cleanup supervisor_pilot   33626 1351199
[2025-11-25 13:04:54] 2025-11-25 18:04:53,354 [wrapper] Test setup, not cleaning
[2025-11-25 13:04:54] 2025-11-25 18:04:53,359 [wrapper] apfmon messages muted
[2025-11-25 13:04:54] 2025-11-25 18:04:53,362 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:04:54] 2025-11-25 18:04:53,364 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:04:54]  *** Error codes and diagnostics ***
[2025-11-25 13:04:54]     "exeErrorCode": 0,
[2025-11-25 13:04:54]     "exeErrorDiag": "",
[2025-11-25 13:04:54]     "pilotErrorCode": 0,
[2025-11-25 13:04:54]     "pilotErrorDiag": "",
[2025-11-25 13:04:54]  *** Listing of results directory ***
[2025-11-25 13:04:54] total 1324960
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-25 13:04:54] -rwx------. 1 boincer umatlas     36292 Nov 23 03:12 runpilot2-wrapper.sh
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 03:12 queuedata.json
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas       100 Nov 24 17:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:04:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 17:47 run_atlas
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas       105 Nov 24 17:47 job.xml
[2025-11-25 13:04:54] -rw-r--r--. 2 boincer umatlas 409879404 Nov 24 17:47 EVNT.47483658._000668.pool.root.1
[2025-11-25 13:04:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 17:47 start_atlas.sh
[2025-11-25 13:04:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 17:47 shared
[2025-11-25 13:04:54] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 17:47 input.tar.gz
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas         0 Nov 24 17:47 boinc_lockfile
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 17:47 pandaJob.out
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas        57 Nov 24 17:47 setup.sh.local
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas    991801 Nov 24 17:47 agis_schedconf.cvmfs.json
[2025-11-25 13:04:54] drwx------. 5 boincer umatlas      4096 Nov 24 17:47 pilot3
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas       533 Nov 25 12:32 boinc_task_state.xml
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas 919998369 Nov 25 13:02 HITS.47556137._006638.pool.root.1
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas      6949 Nov 25 13:03 init_data.xml
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas      1077 Nov 25 13:03 memory_monitor_summary.json
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas   1516240 Nov 25 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas   2284240 Nov 25 13:03 log.47556137._006638.job.log.tgz.1
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas      8648 Nov 25 13:04 heartbeat.json
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 13:04 boinc_mmap_file
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas        29 Nov 25 13:04 wrapper_checkpoint.txt
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas        95 Nov 25 13:04 pilot_heartbeat.json
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas       823 Nov 25 13:04 pilotlog.txt
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas   9200284 Nov 25 13:04 log.47556137._006638.job.log.1
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas       353 Nov 25 13:04 output.list
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas       620 Nov 25 13:04 runtime_log
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas  11499520 Nov 25 13:04 result.tar.gz
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 13:04 runtime_log.err
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas       666 Nov 25 13:04 7OYKDmjNKh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEkKKDmctw2Ym.diag
[2025-11-25 13:04:54] -rw-r--r--. 1 boincer umatlas     21853 Nov 25 13:04 stderr.txt
[2025-11-25 13:04:54] HITS file was successfully produced:
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas 919998369 Nov 25 13:02 shared/HITS.pool.root.1
[2025-11-25 13:04:54]  *** Contents of shared directory: ***
[2025-11-25 13:04:54] total 1310544
[2025-11-25 13:04:54] -rw-r--r--. 2 boincer umatlas 409879404 Nov 24 17:47 ATLAS.root_0
[2025-11-25 13:04:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 17:47 start_atlas.sh
[2025-11-25 13:04:54] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 17:47 input.tar.gz
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas 919998369 Nov 25 13:02 HITS.pool.root.1
[2025-11-25 13:04:54] -rw-------. 1 boincer umatlas  11499520 Nov 25 13:04 result.tar.gz
13:04:56 (1347527): run_atlas exited; CPU time 213592.283166
13:04:56 (1347527): called boinc_finish(0)

</stderr_txt>
]]>

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