Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:43:26 (21410): wrapper (7.7.26015): starting
09:43:26 (21410): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 09:43:26] Arguments: --nthreads 8
[2025-11-24 09:43:26] Threads: 8
[2025-11-24 09:43:26] Checking for CVMFS
[2025-11-24 09:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 09:43:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 09:43:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 09:43:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 09:43:27] 2.11.2.0 4697 114920 132208 153248 0 81 15839370 18432000 977 130560 0 81841251 99.973 4894345 32137 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 09:43:27] CVMFS is ok
[2025-11-24 09:43:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 09:43:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 09:43:27] Further information can be found at the LHC@home message board.
[2025-11-24 09:43:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 09:43:27] Checking for apptainer binary...
[2025-11-24 09:43:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 09:43:27] Running /usr/bin/apptainer --version
[2025-11-24 09:43:27] apptainer version 1.3.2-1.el7
[2025-11-24 09:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 09:43:27] c-206-21.aglt2.org
[2025-11-24 09:43:27] apptainer works
[2025-11-24 09:43:27] Set ATHENA_PROC_NUMBER=8
[2025-11-24 09:43:27] Set ATHENA_CORE_NUMBER=8
[2025-11-24 09:43:27] Starting ATLAS job with PandaID=6895350341
[2025-11-24 09:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:23:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:23:39] 2025-11-25 10:22:54,403 | INFO     | time since job start (70758s) is within the limit (172800.0s)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,445 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 05:23:39] 2025-11-25 10:22:54,450 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.4583333333335
[2025-11-25 05:23:39] 2025-11-25 10:22:54,453 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895350341/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,453 | INFO     | extracted standard info from prmon json
[2025-11-25 05:23:39] 2025-11-25 10:22:54,453 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:23:39] 2025-11-25 10:22:54,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:23:39] 2025-11-25 10:22:54,469 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:23:39] 2025-11-25 10:22:54,470 | INFO     | sum of square deviations: 484005689961.9919
[2025-11-25 05:23:39] 2025-11-25 10:22:54,495 | INFO     | sum of deviations: 2507132751501.9126
[2025-11-25 05:23:39] 2025-11-25 10:22:54,495 | INFO     | mean x: 1764030791.0974138
[2025-11-25 05:23:39] 2025-11-25 10:22:54,495 | INFO     | mean y: 2872197.6379310344
[2025-11-25 05:23:39] 2025-11-25 10:22:54,495 | INFO     | intersect: -9134746352.601545
[2025-11-25 05:23:39] 2025-11-25 10:22:54,496 | INFO     | chi2: 4.993412715653039
[2025-11-25 05:23:39] 2025-11-25 10:22:54,497 | INFO     | sum of square deviations: 477774119365.2
[2025-11-25 05:23:39] 2025-11-25 10:22:54,538 | INFO     | sum of deviations: 2862265943646.0
[2025-11-25 05:23:39] 2025-11-25 10:22:54,539 | INFO     | mean x: 1764030638.6
[2025-11-25 05:23:39] 2025-11-25 10:22:54,539 | INFO     | mean y: 2880883.9393939395
[2025-11-25 05:23:39] 2025-11-25 10:22:54,539 | INFO     | intersect: -10565135707.502316
[2025-11-25 05:23:39] 2025-11-25 10:22:54,541 | INFO     | chi2: 2.24773400401373
[2025-11-25 05:23:39] 2025-11-25 10:22:54,541 | INFO     | current chi2=2.24773400401373 (change=54.986015937203156 %)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,543 | INFO     | sum of square deviations: 471596270705.8916
[2025-11-25 05:23:39] 2025-11-25 10:22:54,589 | INFO     | sum of deviations: 2900611525541.754
[2025-11-25 05:23:39] 2025-11-25 10:22:54,590 | INFO     | mean x: 1764030486.1026087
[2025-11-25 05:23:39] 2025-11-25 10:22:54,590 | INFO     | mean y: 2881828.2817391306
[2025-11-25 05:23:39] 2025-11-25 10:22:54,590 | INFO     | intersect: -10847007106.881817
[2025-11-25 05:23:39] 2025-11-25 10:22:54,592 | INFO     | chi2: 2.1233550206751457
[2025-11-25 05:23:39] 2025-11-25 10:22:54,592 | INFO     | current chi2=2.1233550206751457 (change=5.533527682389623 %)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,592 | INFO     | right removable region: 1149
[2025-11-25 05:23:39] 2025-11-25 10:22:54,594 | INFO     | sum of square deviations: 477773767151.39905
[2025-11-25 05:23:39] 2025-11-25 10:22:54,633 | INFO     | monitor loop #5037: job 0:6895350341 is in state 'finished'
[2025-11-25 05:23:39] 2025-11-25 10:22:54,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,641 | INFO     | sum of deviations: 2238253182762.216
[2025-11-25 05:23:39] 2025-11-25 10:22:54,642 | INFO     | mean x: 1764030943.5991342
[2025-11-25 05:23:39] 2025-11-25 10:22:54,642 | INFO     | mean y: 2878768.417316017
[2025-11-25 05:23:39] 2025-11-25 10:22:54,642 | INFO     | intersect: -8261174525.137889
[2025-11-25 05:23:39] 2025-11-25 10:22:54,644 | INFO     | chi2: 3.23843163223828
[2025-11-25 05:23:39] 2025-11-25 10:22:54,644 | INFO     | current chi2=3.23843163223828 (change=35.14592490849703 %)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,645 | INFO     | sum of square deviations: 471595778009.8984
[2025-11-25 05:23:39] 2025-11-25 10:22:54,688 | INFO     | sum of deviations: 2150175293885.7146
[2025-11-25 05:23:39] 2025-11-25 10:22:54,688 | INFO     | mean x: 1764031096.0982609
[2025-11-25 05:23:39] 2025-11-25 10:22:54,688 | INFO     | mean y: 2880942.2060869564
[2025-11-25 05:23:39] 2025-11-25 10:22:54,688 | INFO     | intersect: -8039973250.600122
[2025-11-25 05:23:39] 2025-11-25 10:22:54,689 | INFO     | chi2: 3.166931275084779
[2025-11-25 05:23:39] 2025-11-25 10:22:54,689 | INFO     | current chi2=3.166931275084779 (change=2.2078698973207156 %)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,689 | INFO     | left removable region: 20
[2025-11-25 05:23:39] 2025-11-25 10:22:54,691 | INFO     | sum of square deviations: 446229641246.0197
[2025-11-25 05:23:39] 2025-11-25 10:22:54,713 | INFO     | sum of deviations: 2411226836253.388
[2025-11-25 05:23:39] 2025-11-25 10:22:54,713 | INFO     | mean x: 1764031065.6040745
[2025-11-25 05:23:39] 2025-11-25 10:22:54,713 | INFO     | mean y: 2893857.741364039
[2025-11-25 05:23:39] 2025-11-25 10:22:54,713 | INFO     | intersect: -9529146715.565454
[2025-11-25 05:23:39] 2025-11-25 10:22:54,714 | INFO     | chi2: 0.24490892536803535
[2025-11-25 05:23:39] 2025-11-25 10:22:54,714 | INFO     | current memory leak: 5.40 B/s (using 1129 data points, chi2=0.24)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,715 | INFO     | could have reported an average CPU frequency of 2603 MHz (42 samples)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,715 | INFO     | ..............................
[2025-11-25 05:23:39] 2025-11-25 10:22:54,715 | INFO     | . Timing measurements:
[2025-11-25 05:23:39] 2025-11-25 10:22:54,715 | INFO     | . get job = 0 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,715 | INFO     | . initial setup = 2 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,716 | INFO     | . payload setup = 5 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,716 | INFO     | . stage-in = 0 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,716 | INFO     | . payload execution = 70724 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,716 | INFO     | . stage-out = 4 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,716 | INFO     | . log creation = 0 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,716 | INFO     | ..............................
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | 
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | job summary report
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | --------------------------------------------------
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | PanDA job id: 6895350341
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | task id: 47556149
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | errors: (none)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | pilot state: finished 
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | transexitcode: 0
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | exeerrorcode: 0
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | exeerrordiag: 
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | exitcode: 0
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | exitmsg: OK
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | cpuconsumptiontime: 550425 s
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | nevents: 1000
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | neventsw: 0
[2025-11-25 05:23:39] 2025-11-25 10:22:54,813 | INFO     | pid: 11487
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | pgrp: 11487
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | corecount: 8
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | event service: False
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | sizes: {0: 2284259, 1: 2284259, 4: 2284549, 11: 2284577, 70734: 2341291, 70738: 2350290, 70739: 2350474, 70744: 2350720}
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | --------------------------------------------------
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | 
[2025-11-25 05:23:39] 2025-11-25 10:22:54,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 05:23:39] 2025-11-25 10:22:54,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:23:39] 2025-11-25 10:22:54,837 | INFO     | job 6895350341 has completed (purged errors)
[2025-11-25 05:23:39] 2025-11-25 10:22:54,837 | INFO     | overall cleanup function is called
[2025-11-25 05:23:39] 2025-11-25 10:22:55,856 | INFO     | --- collectZombieJob: --- 10, [11487]
[2025-11-25 05:23:39] 2025-11-25 10:22:55,857 | INFO     | zombie collector waiting for pid 11487
[2025-11-25 05:23:39] 2025-11-25 10:22:55,857 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:23:39] 2025-11-25 10:22:55,857 | INFO     | collected zombie processes
[2025-11-25 05:23:39] 2025-11-25 10:22:55,857 | INFO     | will attempt to kill all subprocesses of pid=11487
[2025-11-25 05:23:39] 2025-11-25 10:22:56,006 | INFO     | process IDs to be killed: [11487] (in reverse order)
[2025-11-25 05:23:39] 2025-11-25 10:22:56,054 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:23:39] 2025-11-25 10:22:56,054 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:23:39] 2025-11-25 10:22:56,057 | INFO     | did not find any defunct processes belonging to 11487
[2025-11-25 05:23:39] 2025-11-25 10:22:56,059 | INFO     | did not find any defunct processes belonging to 11487
[2025-11-25 05:23:39] 2025-11-25 10:22:56,060 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:23:39] 2025-11-25 10:22:56,061 | INFO     | ready for new job
[2025-11-25 05:23:39] 2025-11-25 10:22:56,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:23:39] 2025-11-25 10:22:56,064 | INFO     | ***************************************
[2025-11-25 05:23:39] 2025-11-25 10:22:56,064 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:23:39] 2025-11-25 10:22:56,065 | INFO     | ***************************************
[2025-11-25 05:23:39] 2025-11-25 10:22:56,065 | INFO     | 
[2025-11-25 05:23:39] 2025-11-25 10:22:56,065 | INFO     | architecture information:
[2025-11-25 05:23:39] 2025-11-25 10:22:56,066 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:23:39] 2025-11-25 10:22:56,079 | INFO     | cat /etc/os-release:
[2025-11-25 05:23:39] NAME="CentOS Linux"
[2025-11-25 05:23:39] VERSION="7 (Core)"
[2025-11-25 05:23:39] ID="centos"
[2025-11-25 05:23:39] ID_LIKE="rhel fedora"
[2025-11-25 05:23:39] VERSION_ID="7"
[2025-11-25 05:23:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:23:39] ANSI_COLOR="0;31"
[2025-11-25 05:23:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:23:39] HOME_URL="https://www.centos.org/"
[2025-11-25 05:23:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:23:39] 
[2025-11-25 05:23:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:23:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:23:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:23:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:23:39] 
[2025-11-25 05:23:39] 2025-11-25 10:22:56,079 | INFO     | ***************************************
[2025-11-25 05:23:39] 2025-11-25 10:22:56,583 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 05:23:39] 2025-11-25 10:22:56,606 | INFO     | sufficient remaining disk space (26404192256 B)
[2025-11-25 05:23:39] 2025-11-25 10:22:56,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:23:39] 2025-11-25 10:22:56,607 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:23:39] 2025-11-25 10:22:56,607 | INFO     | update_server=False
[2025-11-25 05:23:39] 2025-11-25 10:22:56,607 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:23:39] 2025-11-25 10:22:56,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:23:39] 2025-11-25 10:22:56,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:23:39] 2025-11-25 10:22:56,608 | INFO     | aborting loop
[2025-11-25 05:23:39] 2025-11-25 10:22:56,690 | INFO     | all data control threads have been joined
[2025-11-25 05:23:39] 2025-11-25 10:22:57,193 | INFO     | all job control threads have been joined
[2025-11-25 05:23:39] 2025-11-25 10:22:57,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:23:39] 2025-11-25 10:22:57,611 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,612 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,614 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,636 | INFO     | [job] validate thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,637 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,657 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,657 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,697 | INFO     | [data] control thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:57,781 | INFO     | all payload control threads have been joined
[2025-11-25 05:23:39] 2025-11-25 10:22:58,199 | INFO     | [job] control thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:58,338 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:58,456 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:58,787 | INFO     | [payload] control thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:58,985 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:59,158 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:59,358 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:22:59,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:23:39] 2025-11-25 10:23:04,004 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:23:39] 2025-11-25 10:23:27,653 | INFO     | PID=27251 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:23:39] 2025-11-25 10:23:27,654 | INFO     | .. there are 3 such processes running
[2025-11-25 05:23:39] 2025-11-25 10:23:27,654 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:23:39] 2025-11-25 10:23:27,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:23:39] 2025-11-25 10:23:27,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:23:39] 2025-11-25 10:23:34,152 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:23:39] 2025-11-25 10:23:34,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299955955520)>', '<ExcThread(monitor, started 140299368118016)>']
[2025-11-25 05:23:39] 2025-11-25 10:23:34,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:23:39] 2025-11-25 10:23:34,693 | INFO     | [monitor] control thread has ended
[2025-11-25 05:23:39] 2025-11-25 10:23:39,399 | INFO     | all workflow threads have been joined
[2025-11-25 05:23:39] 2025-11-25 10:23:39,400 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:23:39] 2025-11-25 10:23:39,400 | INFO     | traces error code: 0
[2025-11-25 05:23:39] 2025-11-25 10:23:39,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:23:39] 2025-11-25 10:23:39,538 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:23:39] 2025-11-25 10:23:39,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:23:39] 2025-11-25 10:23:39,543 [wrapper] pilotpid: 27251
[2025-11-25 05:23:39] 2025-11-25 10:23:39,546 [wrapper] Pilot exit status: 0
[2025-11-25 05:23:39] 2025-11-25 10:23:39,554 [wrapper] pandaids: 6895350341
[2025-11-25 05:23:39] 2025-11-25 10:23:39,587 [wrapper] cleanup supervisor_pilot  8628 27252
[2025-11-25 05:23:39] 2025-11-25 10:23:39,589 [wrapper] Test setup, not cleaning
[2025-11-25 05:23:39] 2025-11-25 10:23:39,591 [wrapper] apfmon messages muted
[2025-11-25 05:23:39] 2025-11-25 10:23:39,593 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:23:39] 2025-11-25 10:23:39,595 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:23:39]  *** Error codes and diagnostics ***
[2025-11-25 05:23:39]     "exeErrorCode": 0,
[2025-11-25 05:23:39]     "exeErrorDiag": "",
[2025-11-25 05:23:39]     "pilotErrorCode": 0,
[2025-11-25 05:23:39]     "pilotErrorDiag": "",
[2025-11-25 05:23:39]  *** Listing of results directory ***
[2025-11-25 05:23:39] total 1331472
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 16:06 queuedata.json
[2025-11-25 05:23:39] -rwx------ 1 boincer umatlas     36292 Nov 22 16:08 runpilot2-wrapper.sh
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas       100 Nov 24 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:23:39] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 09:43 run_atlas
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas       105 Nov 24 09:43 job.xml
[2025-11-25 05:23:39] -rw-r--r-- 2 boincer umatlas 409359203 Nov 24 09:43 EVNT.47483658._001116.pool.root.1
[2025-11-25 05:23:39] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 09:43 start_atlas.sh
[2025-11-25 05:23:39] drwxrwx--x 2 boincer umatlas      4096 Nov 24 09:43 shared
[2025-11-25 05:23:39] -rw-r--r-- 2 boincer umatlas    611285 Nov 24 09:43 input.tar.gz
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas         0 Nov 24 09:43 boinc_lockfile
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 09:43 pandaJob.out
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas        57 Nov 24 09:43 setup.sh.local
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas    988283 Nov 24 09:43 agis_schedconf.cvmfs.json
[2025-11-25 05:23:39] drwx------ 7 boincer umatlas      4096 Nov 24 09:43 pilot3
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas       533 Nov 25 05:13 boinc_task_state.xml
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 05:20 init_data.xml
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas 925940017 Nov 25 05:22 HITS.47556149._001025.pool.root.1
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas      1066 Nov 25 05:22 memory_monitor_summary.json
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas   1516240 Nov 25 05:22 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas   2313725 Nov 25 05:22 log.47556149._001025.job.log.tgz.1
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas        95 Nov 25 05:22 pilot_heartbeat.json
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas      8664 Nov 25 05:22 heartbeat.json
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 05:23 boinc_mmap_file
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas        29 Nov 25 05:23 wrapper_checkpoint.txt
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas      4821 Nov 25 05:23 pilotlog.txt
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas   9769637 Nov 25 05:23 log.47556149._001025.job.log.1
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas       353 Nov 25 05:23 output.list
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas       620 Nov 25 05:23 runtime_log
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas  12103680 Nov 25 05:23 result.tar.gz
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas       668 Nov 25 05:23 Wk1NDm709g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmePKKDmez39sn.diag
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 05:23 runtime_log.err
[2025-11-25 05:23:39] -rw-r--r-- 1 boincer umatlas     21293 Nov 25 05:23 stderr.txt
[2025-11-25 05:23:39] HITS file was successfully produced:
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas 925940017 Nov 25 05:22 shared/HITS.pool.root.1
[2025-11-25 05:23:39]  *** Contents of shared directory: ***
[2025-11-25 05:23:39] total 1316448
[2025-11-25 05:23:39] -rw-r--r-- 2 boincer umatlas 409359203 Nov 24 09:43 ATLAS.root_0
[2025-11-25 05:23:39] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 09:43 start_atlas.sh
[2025-11-25 05:23:39] -rw-r--r-- 2 boincer umatlas    611285 Nov 24 09:43 input.tar.gz
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas 925940017 Nov 25 05:22 HITS.pool.root.1
[2025-11-25 05:23:39] -rw------- 1 boincer umatlas  12103680 Nov 25 05:23 result.tar.gz
05:23:40 (21410): run_atlas exited; CPU time 549668.458887
05:23:40 (21410): called boinc_finish(0)

</stderr_txt>
]]>

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