Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:03:56 (32409): wrapper (7.7.26015): starting
01:03:56 (32409): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:03:56] Arguments: --nthreads 8
[2025-11-27 01:03:56] Threads: 8
[2025-11-27 01:03:56] Checking for CVMFS
[2025-11-27 01:03:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:03:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:03:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:03:59] 2.11.2.0 21664 172871 140596 153340 1 85 15198322 25165824 1288 130560 10 57892053 99.883 31499719 2317 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:03:59] CVMFS is ok
[2025-11-27 01:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:03:59] Checking for apptainer binary...
[2025-11-27 01:03:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:03:59] Running /usr/bin/apptainer --version
[2025-11-27 01:03:59] apptainer version 1.3.2-1.el7
[2025-11-27 01:03:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:04:04] cg-vwn258.simple-grid.lan
[2025-11-27 01:04:04] apptainer works
[2025-11-27 01:04:04] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:04:04] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:04:04] Starting ATLAS job with PandaID=6895330856
[2025-11-27 01:04:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:16:26]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:16:26] 2025-11-27 23:15:07,623 | INFO     | time since job start (83233s) is within the limit (172800.0s)
[2025-11-28 00:16:26] 2025-11-27 23:15:07,846 | INFO     | monitor loop #5608: job 0:6895330856 is in state 'finished'
[2025-11-28 00:16:26] 2025-11-27 23:15:07,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:26] 2025-11-27 23:15:09,630 | INFO     | time since job start (83235s) is within the limit (172800.0s)
[2025-11-28 00:16:26] 2025-11-27 23:15:10,351 | INFO     | monitor loop #5609: job 0:6895330856 is in state 'finished'
[2025-11-28 00:16:26] 2025-11-27 23:15:10,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:26] 2025-11-27 23:15:11,643 | INFO     | time since job start (83237s) is within the limit (172800.0s)
[2025-11-28 00:16:26] 2025-11-27 23:15:12,863 | INFO     | monitor loop #5610: job 0:6895330856 is in state 'finished'
[2025-11-28 00:16:26] 2025-11-27 23:15:12,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:26] 2025-11-27 23:15:13,650 | INFO     | time since job start (83239s) is within the limit (172800.0s)
[2025-11-28 00:16:26] 2025-11-27 23:15:15,367 | INFO     | monitor loop #5611: job 0:6895330856 is in state 'finished'
[2025-11-28 00:16:26] 2025-11-27 23:15:15,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:26] 2025-11-27 23:15:15,657 | INFO     | time since job start (83241s) is within the limit (172800.0s)
[2025-11-28 00:16:26] 2025-11-27 23:15:17,664 | INFO     | time since job start (83243s) is within the limit (172800.0s)
[2025-11-28 00:16:26] 2025-11-27 23:15:17,872 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:16:26] 2025-11-27 23:15:17,873 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:16:26] 2025-11-27 23:15:17,875 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6895330856/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:16:26] 2025-11-27 23:15:17,876 | INFO     | extracted standard info from prmon json
[2025-11-28 00:16:26] 2025-11-27 23:15:17,876 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:16:26] 2025-11-27 23:15:17,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:16:26] 2025-11-27 23:15:17,889 | INFO     | monitor loop #5612: job 0:6895330856 is in state 'finished'
[2025-11-28 00:16:26] 2025-11-27 23:15:17,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:26] 2025-11-27 23:15:17,900 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:16:26] 2025-11-27 23:15:17,903 | INFO     | sum of square deviations: 771428506800.5419
[2025-11-28 00:16:26] 2025-11-27 23:15:17,952 | INFO     | sum of deviations: 3017229344549.691
[2025-11-28 00:16:26] 2025-11-27 23:15:17,952 | INFO     | mean x: 1764243894.0634687
[2025-11-28 00:16:26] 2025-11-27 23:15:17,953 | INFO     | mean y: 2834292.945387454
[2025-11-28 00:16:26] 2025-11-27 23:15:17,953 | INFO     | intersect: -6897517977.141573
[2025-11-28 00:16:26] 2025-11-27 23:15:17,954 | INFO     | chi2: 24.48902430472947
[2025-11-28 00:16:26] 2025-11-27 23:15:17,956 | INFO     | sum of square deviations: 762920610027.366
[2025-11-28 00:16:26] 2025-11-27 23:15:18,014 | INFO     | sum of deviations: 3476991653699.022
[2025-11-28 00:16:26] 2025-11-27 23:15:18,014 | INFO     | mean x: 1764243741.5674074
[2025-11-28 00:16:26] 2025-11-27 23:15:18,015 | INFO     | mean y: 2842532.8459259258
[2025-11-28 00:16:26] 2025-11-27 23:15:18,015 | INFO     | intersect: -8037654320.818276
[2025-11-28 00:16:26] 2025-11-27 23:15:18,016 | INFO     | chi2: 21.12840602074365
[2025-11-28 00:16:26] 2025-11-27 23:15:18,016 | INFO     | current chi2=21.12840602074365 (change=13.722957036458148 %)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,017 | INFO     | right removable region: 1349
[2025-11-28 00:16:26] 2025-11-27 23:15:18,018 | INFO     | sum of square deviations: 762919731017.3657
[2025-11-28 00:16:26] 2025-11-27 23:15:18,067 | INFO     | sum of deviations: 2440439435974.216
[2025-11-28 00:16:26] 2025-11-27 23:15:18,068 | INFO     | mean x: 1764244046.5674074
[2025-11-28 00:16:26] 2025-11-27 23:15:18,068 | INFO     | mean y: 2844630.486666667
[2025-11-28 00:16:26] 2025-11-27 23:15:18,068 | INFO     | intersect: -5640646513.967465
[2025-11-28 00:16:26] 2025-11-27 23:15:18,070 | INFO     | chi2: 19.585325277139656
[2025-11-28 00:16:26] 2025-11-27 23:15:18,070 | INFO     | current chi2=19.585325277139656 (change=20.02406860547229 %)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,070 | INFO     | left removable region: 10
[2025-11-28 00:16:26] 2025-11-27 23:15:18,072 | INFO     | sum of square deviations: 744422179058.23
[2025-11-28 00:16:26] 2025-11-27 23:15:18,122 | INFO     | sum of deviations: 2512973606468.2144
[2025-11-28 00:16:26] 2025-11-27 23:15:18,122 | INFO     | mean x: 1764244016.0761762
[2025-11-28 00:16:26] 2025-11-27 23:15:18,122 | INFO     | mean y: 2863776.7528005973
[2025-11-28 00:16:26] 2025-11-27 23:15:18,122 | INFO     | intersect: -5952760293.150306
[2025-11-28 00:16:26] 2025-11-27 23:15:18,124 | INFO     | chi2: 11.877594608514324
[2025-11-28 00:16:26] 2025-11-27 23:15:18,124 | INFO     | current memory leak: 3.38 B/s (using 1339 data points, chi2=11.88)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | ..............................
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . Timing measurements:
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . get job = 0 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . initial setup = 5 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . payload setup = 168 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . stage-in = 0 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . payload execution = 82763 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,126 | INFO     | . stage-out = 3 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,127 | INFO     | . log creation = 1 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,127 | INFO     | ..............................
[2025-11-28 00:16:26] 2025-11-27 23:15:18,315 | INFO     | 
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | job summary report
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | --------------------------------------------------
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | PanDA job id: 6895330856
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | task id: 47556137
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | errors: (none)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | pilot state: finished 
[2025-11-28 00:16:26] 2025-11-27 23:15:18,316 | INFO     | transexitcode: 0
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | exeerrorcode: 0
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | exeerrordiag: 
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | exitcode: 0
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | exitmsg: OK
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | cpuconsumptiontime: 311999 s
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | nevents: 1000
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | neventsw: 0
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | pid: 10388
[2025-11-28 00:16:26] 2025-11-27 23:15:18,317 | INFO     | pgrp: 10388
[2025-11-28 00:16:26] 2025-11-27 23:15:18,318 | INFO     | corecount: 8
[2025-11-28 00:16:26] 2025-11-27 23:15:18,318 | INFO     | event service: False
[2025-11-28 00:16:26] 2025-11-27 23:15:18,318 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 44: 2284427, 55: 2284583, 66: 2284611, 77: 2284639, 87: 2284695, 98: 2284723, 108: 2285293, 
[2025-11-28 00:16:26] 2025-11-27 23:15:18,318 | INFO     | --------------------------------------------------
[2025-11-28 00:16:26] 2025-11-27 23:15:18,318 | INFO     | 
[2025-11-28 00:16:26] 2025-11-27 23:15:18,318 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-28 00:16:26] 2025-11-27 23:15:18,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,856 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,856 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,857 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:16:26] 2025-11-27 23:15:18,858 | INFO     | job 6895330856 has completed (purged errors)
[2025-11-28 00:16:26] 2025-11-27 23:15:18,858 | INFO     | overall cleanup function is called
[2025-11-28 00:16:26] 2025-11-27 23:15:19,881 | INFO     | --- collectZombieJob: --- 10, [10388]
[2025-11-28 00:16:26] 2025-11-27 23:15:19,882 | INFO     | zombie collector waiting for pid 10388
[2025-11-28 00:16:26] 2025-11-27 23:15:19,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:16:26] 2025-11-27 23:15:19,882 | INFO     | collected zombie processes
[2025-11-28 00:16:26] 2025-11-27 23:15:19,882 | INFO     | will attempt to kill all subprocesses of pid=10388
[2025-11-28 00:16:26] 2025-11-27 23:15:19,979 | INFO     | process IDs to be killed: [10388] (in reverse order)
[2025-11-28 00:16:26] 2025-11-27 23:15:20,877 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:16:26] 2025-11-27 23:15:20,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:16:26] 2025-11-27 23:15:20,880 | INFO     | did not find any defunct processes belonging to 10388
[2025-11-28 00:16:26] 2025-11-27 23:15:20,883 | INFO     | did not find any defunct processes belonging to 10388
[2025-11-28 00:16:26] 2025-11-27 23:15:20,946 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:16:26] 2025-11-27 23:15:20,947 | INFO     | ready for new job
[2025-11-28 00:16:26] 2025-11-27 23:15:20,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:16:26] 2025-11-27 23:15:20,952 | INFO     | ***************************************
[2025-11-28 00:16:26] 2025-11-27 23:15:20,952 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:16:26] 2025-11-27 23:15:20,952 | INFO     | ***************************************
[2025-11-28 00:16:26] 2025-11-27 23:15:20,952 | INFO     | 
[2025-11-28 00:16:26] 2025-11-27 23:15:20,953 | INFO     | pilot is running in a VM
[2025-11-28 00:16:26] 2025-11-27 23:15:20,953 | INFO     | architecture information:
[2025-11-28 00:16:26] 2025-11-27 23:15:20,961 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:16:26] 2025-11-27 23:15:21,172 | INFO     | cat /etc/os-release:
[2025-11-28 00:16:26] NAME="CentOS Linux"
[2025-11-28 00:16:26] VERSION="7 (Core)"
[2025-11-28 00:16:26] ID="centos"
[2025-11-28 00:16:26] ID_LIKE="rhel fedora"
[2025-11-28 00:16:26] VERSION_ID="7"
[2025-11-28 00:16:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:16:26] ANSI_COLOR="0;31"
[2025-11-28 00:16:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:16:26] HOME_URL="https://www.centos.org/"
[2025-11-28 00:16:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:16:26] 
[2025-11-28 00:16:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:16:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:16:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:16:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:16:26] 
[2025-11-28 00:16:26] 2025-11-27 23:15:21,172 | INFO     | ***************************************
[2025-11-28 00:16:26] 2025-11-27 23:15:21,675 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-28 00:16:26] 2025-11-27 23:15:21,961 | INFO     | sufficient remaining disk space (495387148288 B)
[2025-11-28 00:16:26] 2025-11-27 23:15:21,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:16:26] 2025-11-27 23:15:21,961 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:16:26] 2025-11-27 23:15:21,961 | INFO     | update_server=False
[2025-11-28 00:16:26] 2025-11-27 23:15:21,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:16:26] 2025-11-27 23:15:21,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:16:26] 2025-11-27 23:15:21,962 | INFO     | aborting loop
[2025-11-28 00:16:26] 2025-11-27 23:15:22,414 | INFO     | all payload control threads have been joined
[2025-11-28 00:16:26] 2025-11-27 23:15:22,967 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:22,968 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:22,992 | INFO     | all data control threads have been joined
[2025-11-28 00:16:26] 2025-11-27 23:15:23,063 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:16:26] 2025-11-27 23:15:23,168 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:16:26] 2025-11-27 23:15:23,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,420 | INFO     | [payload] control thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,463 | INFO     | all job control threads have been joined
[2025-11-28 00:16:26] 2025-11-27 23:15:23,741 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,812 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:23,998 | INFO     | [data] control thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:24,153 | INFO     | [job] validate thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:24,225 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:24,252 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:24,469 | INFO     | [job] control thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:24,698 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:16:26] 2025-11-27 23:15:25,138 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:28,706 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:16:26] 2025-11-27 23:15:50,909 | INFO     | PID=3819 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 00:16:26] 2025-11-27 23:15:50,909 | INFO     | .. there are 9 such processes running
[2025-11-28 00:16:26] 2025-11-27 23:15:50,910 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:16:26] 2025-11-27 23:15:50,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:16:26] 2025-11-27 23:15:50,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:16:26] 2025-11-27 23:16:18,642 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:16:26] 2025-11-27 23:16:19,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405782538048)>', '<ExcThread(monitor, started 140405333014272)>']
[2025-11-28 00:16:26] 2025-11-27 23:16:20,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:16:26] 2025-11-27 23:16:20,081 | INFO     | [monitor] control thread has ended
[2025-11-28 00:16:26] 2025-11-27 23:16:24,280 | INFO     | all workflow threads have been joined
[2025-11-28 00:16:26] 2025-11-27 23:16:24,281 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:16:26] 2025-11-27 23:16:24,281 | INFO     | traces error code: 0
[2025-11-28 00:16:26] 2025-11-27 23:16:24,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:16:26] 2025-11-27 23:16:24,523 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:16:26] 2025-11-27 23:16:24,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:16:26] 2025-11-27 23:16:24,548 [wrapper] pilotpid: 3819
[2025-11-28 00:16:26] 2025-11-27 23:16:24,565 [wrapper] Pilot exit status: 0
[2025-11-28 00:16:26] 2025-11-27 23:16:24,756 [wrapper] pandaids: 6895330856
[2025-11-28 00:16:26] 2025-11-27 23:16:25,097 [wrapper] cleanup supervisor_pilot 12868 3820
[2025-11-28 00:16:26] 2025-11-27 23:16:25,202 [wrapper] Test setup, not cleaning
[2025-11-28 00:16:26] 2025-11-27 23:16:25,323 [wrapper] apfmon messages muted
[2025-11-28 00:16:26] 2025-11-27 23:16:25,419 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:16:26] 2025-11-27 23:16:25,507 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:16:26]  *** Error codes and diagnostics ***
[2025-11-28 00:16:26]     "exeErrorCode": 0,
[2025-11-28 00:16:26]     "exeErrorDiag": "",
[2025-11-28 00:16:26]     "pilotErrorCode": 0,
[2025-11-28 00:16:26]     "pilotErrorDiag": "",
[2025-11-28 00:16:26]  *** Listing of results directory ***
[2025-11-28 00:16:26] total 1315080
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc    576529 Nov 21 22:26 pilot3.tar.gz
[2025-11-28 00:16:26] -rwx------. 1 boinc boinc     36292 Nov 21 22:45 runpilot2-wrapper.sh
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc      5112 Nov 21 22:45 queuedata.json
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:16:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:03 run_atlas
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:03 job.xml
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc      6390 Nov 27 01:03 init_data.xml
[2025-11-28 00:16:26] -rw-r--r--. 2 boinc boinc 408554081 Nov 27 01:03 EVNT.47483658._000145.pool.root.1
[2025-11-28 00:16:26] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:03 start_atlas.sh
[2025-11-28 00:16:26] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:03 shared
[2025-11-28 00:16:26] -rw-r--r--. 2 boinc boinc    590098 Nov 27 01:03 input.tar.gz
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:03 boinc_lockfile
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc      2786 Nov 27 01:04 pandaJob.out
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc    991538 Nov 27 01:07 agis_schedconf.cvmfs.json
[2025-11-28 00:16:26] drwx------. 5 boinc boinc      4096 Nov 27 01:07 pilot3
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:51 boinc_task_state.xml
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc 907091868 Nov 28 00:12 HITS.47556137._001448.pool.root.1
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc      1028 Nov 28 00:13 memory_monitor_summary.json
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc   1516240 Nov 28 00:13 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc   2447492 Nov 28 00:13 log.47556137._001448.job.log.tgz.1
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc      8624 Nov 28 00:15 heartbeat.json
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc        95 Nov 28 00:15 pilot_heartbeat.json
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc      4883 Nov 28 00:16 pilotlog.txt
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc  11097115 Nov 28 00:16 log.47556137._001448.job.log.1
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:16 boinc_mmap_file
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:16 wrapper_checkpoint.txt
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc       353 Nov 28 00:16 output.list
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:16 runtime_log
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc  13568000 Nov 28 00:16 result.tar.gz
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:16 runtime_log.err
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc       662 Nov 28 00:16 bnuNDmx7ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1oHKDmpW2qsm.diag
[2025-11-28 00:16:26] -rw-r--r--. 1 boinc boinc     21435 Nov 28 00:16 stderr.txt
[2025-11-28 00:16:26] HITS file was successfully produced:
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc 907091868 Nov 28 00:12 shared/HITS.pool.root.1
[2025-11-28 00:16:26]  *** Contents of shared directory: ***
[2025-11-28 00:16:26] total 1298660
[2025-11-28 00:16:26] -rw-r--r--. 2 boinc boinc 408554081 Nov 27 01:03 ATLAS.root_0
[2025-11-28 00:16:26] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:03 start_atlas.sh
[2025-11-28 00:16:26] -rw-r--r--. 2 boinc boinc    590098 Nov 27 01:03 input.tar.gz
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc 907091868 Nov 28 00:12 HITS.pool.root.1
[2025-11-28 00:16:26] -rw-------. 1 boinc boinc  13568000 Nov 28 00:16 result.tar.gz
00:16:28 (32409): run_atlas exited; CPU time 312551.974919
00:16:28 (32409): called boinc_finish(0)

</stderr_txt>
]]>

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