Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:42:56 (3881275): wrapper (7.7.26015): starting
06:42:56 (3881275): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 06:42:56] Arguments: --nthreads 12
[2025-11-24 06:42:56] Threads: 12
[2025-11-24 06:42:56] Checking for CVMFS
[2025-11-24 06:42:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 06:42:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 06:42:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 06:42:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 06:42:57] 2.11.5.0 3367711 25541 186076 153248 0 96 41351166 45568000 12088 130560 0 229793290 99.805 126793908 24693 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 06:42:57] CVMFS is ok
[2025-11-24 06:42:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 06:42:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 06:42:57] Further information can be found at the LHC@home message board.
[2025-11-24 06:42:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 06:42:57] Checking for apptainer binary...
[2025-11-24 06:42:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 06:42:57] Running /usr/bin/apptainer --version
[2025-11-24 06:42:57] apptainer version 1.4.1-1.el9
[2025-11-24 06:42:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 06:42:57] wns0082.triumf.lcg
[2025-11-24 06:42:57] apptainer works
[2025-11-24 06:42:57] Set ATHENA_PROC_NUMBER=12
[2025-11-24 06:42:57] Set ATHENA_CORE_NUMBER=12
[2025-11-24 06:42:57] Starting ATLAS job with PandaID=6895382863
[2025-11-24 06:42:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:48:22]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | wrong length of table data, x=[1763995436.0, 1763995497.0], y=[1520.0, 444208.0] (must be same and length>=4)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | could have reported an average CPU frequency of 2492 MHz (4 samples)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | ..............................
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . Timing measurements:
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . get job = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . initial setup = 3 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . payload setup = 9 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . stage-in = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . payload execution = 101 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | . stage-out = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | . log creation = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | ..............................
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895382863/pilotlog.txt
[2025-11-24 06:48:22] 2025-11-24 14:47:33,513 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 06:48:22] - Log from pilotlog.txt -
[2025-11-24 06:48:22] 2025-11-24 14:47:33,453 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895382863/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,469 | INFO     | extracted standard info from prmon json
[2025-11-24 06:48:22] 2025-11-24 14:47:33,469 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:48:22] 2025-11-24 14:47:33,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | wrong length of table data, x=[1763995436.0, 1763995497.0], y=[1520.0, 444208.0] (must be same and length>=4)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | could have reported an average CPU frequency of 2492 MHz (4 samples)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | ..............................
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . Timing measurements:
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . get job = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . initial setup = 3 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . payload setup = 9 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . stage-in = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . payload execution = 101 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | . stage-out = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | . log creation = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | ..............................
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895382863/pilotlog.txt
[2025-11-24 06:48:22] 2025-11-24 14:47:33,513 | WARNING  | 
[2025-11-24 06:48:22] [begin log extracts]
[2025-11-24 06:48:22] - Log from pilotlog.txt -
[2025-11-24 06:48:22] 2025-11-24 14:47:33,453 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895382863/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,469 | INFO     | extracted standard info from prmon json
[2025-11-24 06:48:22] 2025-11-24 14:47:33,469 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:48:22] 2025-11-24 14:47:33,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 06:48:22] 2025-11-24 14:47:33,470 | WARNING  | wrong length of table data, x=[1763995436.0, 1763995497.0], y=[1520.0, 444208.0] (must be same and length>=4)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | could have reported an average CPU frequency of 2492 MHz (4 samples)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | ..............................
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . Timing measurements:
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . get job = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . initial setup = 3 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . payload setup = 9 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . stage-in = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,471 | INFO     | . payload execution = 101 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | . stage-out = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | . log creation = 0 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | ..............................
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 06:48:22] 2025-11-24 14:47:33,472 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895382863/pilotlog.txt
[2025-11-24 06:48:22] [end log extracts]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,513 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,514 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | 
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | job summary report
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | --------------------------------------------------
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | PanDA job id: 6895382863
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | task id: 47556137
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 06:45:21,398 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | pilot state: failed 
[2025-11-24 06:48:22] 2025-11-24 14:47:33,792 | INFO     | transexitcode: 65
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | exeerrorcode: 65
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | exitcode: 65
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | cpuconsumptiontime: 46 s
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | nevents: 0
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | neventsw: 0
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | pid: 3891473
[2025-11-24 06:48:22] 2025-11-24 14:47:33,793 | INFO     | pgrp: 3891473
[2025-11-24 06:48:22] 2025-11-24 14:47:33,794 | INFO     | corecount: 12
[2025-11-24 06:48:22] 2025-11-24 14:47:33,794 | INFO     | event service: False
[2025-11-24 06:48:22] 2025-11-24 14:47:33,794 | INFO     | sizes: {0: 2283481, 1: 2284334, 2: 2284334, 10: 2284624, 12: 2284652, 114: 2310177, 115: 2314495, 240: 2314633}
[2025-11-24 06:48:22] 2025-11-24 14:47:33,794 | INFO     | --------------------------------------------------
[2025-11-24 06:48:22] 2025-11-24 14:47:33,794 | INFO     | 
[2025-11-24 06:48:22] 2025-11-24 14:47:33,794 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 06:48:22] 2025-11-24 14:47:33,859 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:48:22] 2025-11-24 14:47:33,861 | INFO     | job 6895382863 has completed (purged errors)
[2025-11-24 06:48:22] 2025-11-24 14:47:33,861 | INFO     | overall cleanup function is called
[2025-11-24 06:48:22] 2025-11-24 14:47:34,891 | INFO     | --- collectZombieJob: --- 10, [3891473]
[2025-11-24 06:48:22] 2025-11-24 14:47:34,891 | INFO     | zombie collector waiting for pid 3891473
[2025-11-24 06:48:22] 2025-11-24 14:47:34,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:48:22] 2025-11-24 14:47:34,891 | INFO     | collected zombie processes
[2025-11-24 06:48:22] 2025-11-24 14:47:34,891 | INFO     | will attempt to kill all subprocesses of pid=3891473
[2025-11-24 06:48:22] 2025-11-24 14:47:35,097 | INFO     | process IDs to be killed: [3891473] (in reverse order)
[2025-11-24 06:48:22] 2025-11-24 14:47:35,165 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:48:22] 2025-11-24 14:47:35,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:48:22] 2025-11-24 14:47:35,176 | INFO     | did not find any defunct processes belonging to 3891473
[2025-11-24 06:48:22] 2025-11-24 14:47:35,198 | INFO     | did not find any defunct processes belonging to 3891473
[2025-11-24 06:48:22] 2025-11-24 14:47:35,201 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:48:22] 2025-11-24 14:47:35,201 | INFO     | ready for new job
[2025-11-24 06:48:22] 2025-11-24 14:47:35,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:48:22] 2025-11-24 14:47:35,203 | INFO     | ***************************************
[2025-11-24 06:48:22] 2025-11-24 14:47:35,203 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:48:22] 2025-11-24 14:47:35,203 | INFO     | ***************************************
[2025-11-24 06:48:22] 2025-11-24 14:47:35,203 | INFO     | 
[2025-11-24 06:48:22] 2025-11-24 14:47:35,205 | INFO     | architecture information:
[2025-11-24 06:48:22] 2025-11-24 14:47:35,206 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:48:22] 2025-11-24 14:47:35,280 | INFO     | cat /etc/os-release:
[2025-11-24 06:48:22] NAME="CentOS Linux"
[2025-11-24 06:48:22] VERSION="7 (Core)"
[2025-11-24 06:48:22] ID="centos"
[2025-11-24 06:48:22] ID_LIKE="rhel fedora"
[2025-11-24 06:48:22] VERSION_ID="7"
[2025-11-24 06:48:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:48:22] ANSI_COLOR="0;31"
[2025-11-24 06:48:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:48:22] HOME_URL="https://www.centos.org/"
[2025-11-24 06:48:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:48:22] 
[2025-11-24 06:48:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:48:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:48:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:48:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:48:22] 
[2025-11-24 06:48:22] 2025-11-24 14:47:35,280 | INFO     | ***************************************
[2025-11-24 06:48:22] 2025-11-24 14:47:35,784 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 06:48:22] 2025-11-24 14:47:35,854 | INFO     | sufficient remaining disk space (1838131707904 B)
[2025-11-24 06:48:22] 2025-11-24 14:47:35,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:48:22] 2025-11-24 14:47:35,854 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:48:22] 2025-11-24 14:47:35,854 | INFO     | update_server=False
[2025-11-24 06:48:22] 2025-11-24 14:47:35,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:48:22] 2025-11-24 14:47:36,125 | INFO     | all data control threads have been joined
[2025-11-24 06:48:22] 2025-11-24 14:47:36,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:48:22] 2025-11-24 14:47:36,448 | INFO     | aborting loop
[2025-11-24 06:48:22] 2025-11-24 14:47:36,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:48:22] 2025-11-24 14:47:36,860 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:36,868 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:36,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:48:22] 2025-11-24 14:47:36,944 | INFO     | all payload control threads have been joined
[2025-11-24 06:48:22] 2025-11-24 14:47:37,131 | INFO     | [data] control thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:37,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:37,338 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:37,357 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:37,454 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:37,544 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:37,578 | INFO     | all job control threads have been joined
[2025-11-24 06:48:22] 2025-11-24 14:47:37,951 | INFO     | [payload] control thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:38,068 | INFO     | [job] validate thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:38,344 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:38,359 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:38,584 | INFO     | [job] control thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:38,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:48:22] 2025-11-24 14:47:38,906 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:39,658 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:47:40,606 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:48:22] 2025-11-24 14:48:06,481 | INFO     | PID=3884922 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:48:22] 2025-11-24 14:48:06,483 | INFO     | .. there are 14 such processes running
[2025-11-24 06:48:22] 2025-11-24 14:48:06,483 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:48:22] 2025-11-24 14:48:06,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:48:22] 2025-11-24 14:48:06,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:48:22] 2025-11-24 14:48:16,025 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:48:22] 2025-11-24 14:48:16,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993094981440)>', '<ExcThread(monitor, started 139992571569920)>']
[2025-11-24 06:48:22] 2025-11-24 14:48:17,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:48:22] 2025-11-24 14:48:17,550 | INFO     | [monitor] control thread has ended
[2025-11-24 06:48:22] 2025-11-24 14:48:21,875 | INFO     | all workflow threads have been joined
[2025-11-24 06:48:22] 2025-11-24 14:48:21,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:48:22] 2025-11-24 14:48:21,875 | INFO     | traces error code: 0
[2025-11-24 06:48:22] 2025-11-24 14:48:21,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:48:22] 2025-11-24 14:48:22,112 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:48:22] 2025-11-24 14:48:22,114 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:48:22] 2025-11-24 14:48:22,116 [wrapper] pilotpid: 3884922
[2025-11-24 06:48:22] 2025-11-24 14:48:22,118 [wrapper] Pilot exit status: 0
[2025-11-24 06:48:22] 2025-11-24 14:48:22,200 [wrapper] pandaids: 6895382863
[2025-11-24 06:48:22] 2025-11-24 14:48:22,309 [wrapper] cleanup supervisor_pilot 3884928 3884923
[2025-11-24 06:48:22] 2025-11-24 14:48:22,315 [wrapper] Test setup, not cleaning
[2025-11-24 06:48:22] 2025-11-24 14:48:22,317 [wrapper] apfmon messages muted
[2025-11-24 06:48:22] 2025-11-24 14:48:22,319 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:48:22] 2025-11-24 14:48:22,321 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:48:22]  *** Error codes and diagnostics ***
[2025-11-24 06:48:22]     "exeErrorCode": 65,
[2025-11-24 06:48:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 06:48:22]     "pilotErrorCode": 1305,
[2025-11-24 06:48:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 06:48:22]  *** Listing of results directory ***
[2025-11-24 06:48:22] total 404724
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc    576529 Nov 23 19:19 pilot3.tar.gz
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc      5112 Nov 23 19:36 queuedata.json
[2025-11-24 06:48:22] -rwx------. 1 boinc boinc     36292 Nov 23 19:36 runpilot2-wrapper.sh
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc       100 Nov 24 06:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:48:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 06:42 run_atlas
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc       105 Nov 24 06:42 job.xml
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc      6595 Nov 24 06:42 init_data.xml
[2025-11-24 06:48:22] -rw-r--r--. 2 boinc boinc 410222329 Nov 24 06:42 EVNT.47483658._000998.pool.root.1
[2025-11-24 06:48:22] -rw-r--r--. 2 boinc boinc     15847 Nov 24 06:42 start_atlas.sh
[2025-11-24 06:48:22] drwxrwx--x. 2 boinc boinc      4096 Nov 24 06:42 shared
[2025-11-24 06:48:22] -rw-r--r--. 2 boinc boinc    590107 Nov 24 06:42 input.tar.gz
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc         0 Nov 24 06:42 boinc_lockfile
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc      2785 Nov 24 06:42 pandaJob.out
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc    988283 Nov 24 06:43 agis_schedconf.cvmfs.json
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc   1516227 Nov 24 06:43 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:48:22] drwx------. 5 boinc boinc      4096 Nov 24 06:43 pilot3
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc       524 Nov 24 06:45 boinc_task_state.xml
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc       988 Nov 24 06:45 memory_monitor_summary.json
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc     49419 Nov 24 06:45 log.47556137._009850.job.log.tgz.1
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc        95 Nov 24 06:47 pilot_heartbeat.json
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc     10336 Nov 24 06:47 heartbeat.json
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc      8192 Nov 24 06:48 boinc_mmap_file
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc        23 Nov 24 06:48 wrapper_checkpoint.txt
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc      4823 Nov 24 06:48 pilotlog.txt
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc     99357 Nov 24 06:48 log.47556137._009850.job.log.1
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc       186 Nov 24 06:48 output.list
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc       620 Nov 24 06:48 runtime_log
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc    174080 Nov 24 06:48 result.tar.gz
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc       645 Nov 24 06:48 XbOMDmtYch8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmotIKDmQKUy5m.diag
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc      8636 Nov 24 06:48 runtime_log.err
[2025-11-24 06:48:22] -rw-r--r--. 1 boinc boinc     22482 Nov 24 06:48 stderr.txt
[2025-11-24 06:48:22] No HITS result produced
[2025-11-24 06:48:22]  *** Contents of shared directory: ***
[2025-11-24 06:48:22] total 401380
[2025-11-24 06:48:22] -rw-r--r--. 2 boinc boinc 410222329 Nov 24 06:42 ATLAS.root_0
[2025-11-24 06:48:22] -rw-r--r--. 2 boinc boinc     15847 Nov 24 06:42 start_atlas.sh
[2025-11-24 06:48:22] -rw-r--r--. 2 boinc boinc    590107 Nov 24 06:42 input.tar.gz
[2025-11-24 06:48:22] -rw-------. 1 boinc boinc    174080 Nov 24 06:48 result.tar.gz
06:48:23 (3881275): run_atlas exited; CPU time 45.418562
06:48:23 (3881275): called boinc_finish(0)

</stderr_txt>
]]>

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