Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:05:51 (2378): wrapper (7.7.26015): starting
00:05:51 (2378): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:05:51] Arguments: --nthreads 8
[2025-11-27 00:05:51] Threads: 8
[2025-11-27 00:05:51] Checking for CVMFS
[2025-11-27 00:05:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:05:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:05:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:05:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:05:53] 2.11.2.0 22322 211205 140352 153337 0 289 15847372 25165825 1294 130560 12 84006056 99.897 38518027 2246 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:05:53] CVMFS is ok
[2025-11-27 00:05:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:05:54] Checking for apptainer binary...
[2025-11-27 00:05:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:05:54] Running /usr/bin/apptainer --version
[2025-11-27 00:05:54] apptainer version 1.3.2-1.el7
[2025-11-27 00:05:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:06:17] cg-vwn447.simple-grid.lan
[2025-11-27 00:06:17] apptainer works
[2025-11-27 00:06:17] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:06:17] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:06:17] Starting ATLAS job with PandaID=6895365710
[2025-11-27 00:06:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:52:58]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:52:58] 2025-11-27 22:51:46,639 | INFO     | time since job start (85287s) is within the limit (172800.0s)
[2025-11-27 23:52:58] 2025-11-27 22:51:47,511 | INFO     | monitor loop #5756: job 0:6895365710 is in state 'finished'
[2025-11-27 23:52:58] 2025-11-27 22:51:47,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:58] 2025-11-27 22:51:48,649 | INFO     | time since job start (85289s) is within the limit (172800.0s)
[2025-11-27 23:52:58] 2025-11-27 22:51:50,016 | INFO     | monitor loop #5757: job 0:6895365710 is in state 'finished'
[2025-11-27 23:52:58] 2025-11-27 22:51:50,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:58] 2025-11-27 22:51:50,665 | INFO     | time since job start (85291s) is within the limit (172800.0s)
[2025-11-27 23:52:58] 2025-11-27 22:51:52,521 | INFO     | monitor loop #5758: job 0:6895365710 is in state 'finished'
[2025-11-27 23:52:58] 2025-11-27 22:51:52,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:58] 2025-11-27 22:51:52,676 | INFO     | time since job start (85293s) is within the limit (172800.0s)
[2025-11-27 23:52:58] 2025-11-27 22:51:54,685 | INFO     | time since job start (85295s) is within the limit (172800.0s)
[2025-11-27 23:52:58] 2025-11-27 22:51:55,025 | INFO     | monitor loop #5759: job 0:6895365710 is in state 'finished'
[2025-11-27 23:52:58] 2025-11-27 22:51:55,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:58] 2025-11-27 22:51:56,697 | INFO     | time since job start (85297s) is within the limit (172800.0s)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,347 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:52:58] 2025-11-27 22:51:57,350 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:52:58] 2025-11-27 22:51:57,352 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895365710/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,353 | INFO     | extracted standard info from prmon json
[2025-11-27 23:52:58] 2025-11-27 22:51:57,353 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:52:58] 2025-11-27 22:51:57,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:52:58] 2025-11-27 22:51:57,379 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:52:58] 2025-11-27 22:51:57,381 | INFO     | sum of square deviations: 829175406949.0559
[2025-11-27 23:52:58] 2025-11-27 22:51:57,444 | INFO     | sum of deviations: 2947158304563.1733
[2025-11-27 23:52:58] 2025-11-27 22:51:57,444 | INFO     | mean x: 1764241455.5756483
[2025-11-27 23:52:58] 2025-11-27 22:51:57,444 | INFO     | mean y: 2843067.969740634
[2025-11-27 23:52:58] 2025-11-27 22:51:57,445 | INFO     | intersect: -6267843222.866967
[2025-11-27 23:52:58] 2025-11-27 22:51:57,446 | INFO     | chi2: 22.75010442205593
[2025-11-27 23:52:58] 2025-11-27 22:51:57,449 | INFO     | sum of square deviations: 820247266993.2509
[2025-11-27 23:52:58] 2025-11-27 22:51:57,510 | INFO     | sum of deviations: 3417135541285.718
[2025-11-27 23:52:58] 2025-11-27 22:51:57,512 | INFO     | mean x: 1764241303.0795372
[2025-11-27 23:52:58] 2025-11-27 22:51:57,513 | INFO     | mean y: 2851094.9934924077
[2025-11-27 23:52:58] 2025-11-27 22:51:57,513 | INFO     | intersect: -7346946829.059718
[2025-11-27 23:52:58] 2025-11-27 22:51:57,514 | INFO     | chi2: 19.413242162857706
[2025-11-27 23:52:58] 2025-11-27 22:51:57,515 | INFO     | current chi2=19.413242162857706 (change=14.667459090707203 %)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,515 | INFO     | right removable region: 1382
[2025-11-27 23:52:58] 2025-11-27 22:51:57,517 | INFO     | sum of square deviations: 820246356263.252
[2025-11-27 23:52:58] 2025-11-27 22:51:57,541 | INFO     | monitor loop #5760: job 0:6895365710 is in state 'finished'
[2025-11-27 23:52:58] 2025-11-27 22:51:57,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,577 | INFO     | sum of deviations: 2354498519000.802
[2025-11-27 23:52:58] 2025-11-27 22:51:57,578 | INFO     | mean x: 1764241608.0795372
[2025-11-27 23:52:58] 2025-11-27 22:51:57,578 | INFO     | mean y: 2853189.9472161965
[2025-11-27 23:52:58] 2025-11-27 22:51:57,578 | INFO     | intersect: -5061362239.556867
[2025-11-27 23:52:58] 2025-11-27 22:51:57,580 | INFO     | chi2: 17.874599255197438
[2025-11-27 23:52:58] 2025-11-27 22:51:57,580 | INFO     | current chi2=17.874599255197438 (change=21.430693575769936 %)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,580 | INFO     | left removable region: 10
[2025-11-27 23:52:58] 2025-11-27 22:51:57,582 | INFO     | sum of square deviations: 800829640474.3302
[2025-11-27 23:52:58] 2025-11-27 22:51:57,648 | INFO     | sum of deviations: 2439043503428.459
[2025-11-27 23:52:58] 2025-11-27 22:51:57,649 | INFO     | mean x: 1764241577.5881925
[2025-11-27 23:52:58] 2025-11-27 22:51:57,649 | INFO     | mean y: 2871908.744169096
[2025-11-27 23:52:58] 2025-11-27 22:51:57,649 | INFO     | intersect: -5370383201.726216
[2025-11-27 23:52:58] 2025-11-27 22:51:57,655 | INFO     | chi2: 10.187826621394551
[2025-11-27 23:52:58] 2025-11-27 22:51:57,655 | INFO     | current memory leak: 3.05 B/s (using 1372 data points, chi2=10.19)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,656 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | ..............................
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . Timing measurements:
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . get job = 0 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . initial setup = 10 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . payload setup = 177 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . stage-in = 0 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . payload execution = 84820 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . stage-out = 5 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | . log creation = 2 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,657 | INFO     | ..............................
[2025-11-27 23:52:58] 2025-11-27 22:51:57,787 | INFO     | 
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | job summary report
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | --------------------------------------------------
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | PanDA job id: 6895365710
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | task id: 47556149
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | errors: (none)
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | pilot state: finished 
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | transexitcode: 0
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | exeerrorcode: 0
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | exeerrordiag: 
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | exitcode: 0
[2025-11-27 23:52:58] 2025-11-27 22:51:57,788 | INFO     | exitmsg: OK
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | cpuconsumptiontime: 318966 s
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | nevents: 1000
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | neventsw: 0
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | pid: 12793
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | pgrp: 12793
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | corecount: 8
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | event service: False
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | sizes: {0: 2284037, 1: 2284292, 2: 2284292, 12: 2284320, 23: 2284348, 34: 2284376, 44: 2284532, 55: 2284560, 66: 2284588, 77: 2284616, 87: 2285242, 85002: 2345982,
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | --------------------------------------------------
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | 
[2025-11-27 23:52:58] 2025-11-27 22:51:57,789 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-27 23:52:58] 2025-11-27 22:51:58,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | job 6895365710 has completed (purged errors)
[2025-11-27 23:52:58] 2025-11-27 22:51:58,487 | INFO     | overall cleanup function is called
[2025-11-27 23:52:58] 2025-11-27 22:51:59,505 | INFO     | --- collectZombieJob: --- 10, [12793]
[2025-11-27 23:52:58] 2025-11-27 22:51:59,506 | INFO     | zombie collector waiting for pid 12793
[2025-11-27 23:52:58] 2025-11-27 22:51:59,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:52:58] 2025-11-27 22:51:59,506 | INFO     | collected zombie processes
[2025-11-27 23:52:58] 2025-11-27 22:51:59,506 | INFO     | will attempt to kill all subprocesses of pid=12793
[2025-11-27 23:52:58] 2025-11-27 22:51:59,625 | INFO     | process IDs to be killed: [12793] (in reverse order)
[2025-11-27 23:52:58] 2025-11-27 22:51:59,700 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:52:58] 2025-11-27 22:51:59,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:52:58] 2025-11-27 22:51:59,704 | INFO     | did not find any defunct processes belonging to 12793
[2025-11-27 23:52:58] 2025-11-27 22:51:59,707 | INFO     | did not find any defunct processes belonging to 12793
[2025-11-27 23:52:58] 2025-11-27 22:51:59,709 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:52:58] 2025-11-27 22:51:59,709 | INFO     | ready for new job
[2025-11-27 23:52:58] 2025-11-27 22:51:59,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:52:58] 2025-11-27 22:51:59,714 | INFO     | ***************************************
[2025-11-27 23:52:58] 2025-11-27 22:51:59,714 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:52:58] 2025-11-27 22:51:59,714 | INFO     | ***************************************
[2025-11-27 23:52:58] 2025-11-27 22:51:59,714 | INFO     | 
[2025-11-27 23:52:58] 2025-11-27 22:51:59,715 | INFO     | pilot is running in a VM
[2025-11-27 23:52:58] 2025-11-27 22:51:59,715 | INFO     | architecture information:
[2025-11-27 23:52:58] 2025-11-27 22:51:59,716 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:52:58] 2025-11-27 22:51:59,737 | INFO     | cat /etc/os-release:
[2025-11-27 23:52:58] NAME="CentOS Linux"
[2025-11-27 23:52:58] VERSION="7 (Core)"
[2025-11-27 23:52:58] ID="centos"
[2025-11-27 23:52:58] ID_LIKE="rhel fedora"
[2025-11-27 23:52:58] VERSION_ID="7"
[2025-11-27 23:52:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:52:58] ANSI_COLOR="0;31"
[2025-11-27 23:52:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:52:58] HOME_URL="https://www.centos.org/"
[2025-11-27 23:52:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:52:58] 
[2025-11-27 23:52:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:52:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:52:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:52:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:52:58] 
[2025-11-27 23:52:58] 2025-11-27 22:51:59,737 | INFO     | ***************************************
[2025-11-27 23:52:58] 2025-11-27 22:52:00,241 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-27 23:52:58] 2025-11-27 22:52:00,470 | INFO     | sufficient remaining disk space (495451111424 B)
[2025-11-27 23:52:58] 2025-11-27 22:52:00,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:52:58] 2025-11-27 22:52:00,471 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:52:58] 2025-11-27 22:52:00,471 | INFO     | update_server=False
[2025-11-27 23:52:58] 2025-11-27 22:52:00,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:52:58] 2025-11-27 22:52:00,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:52:58] 2025-11-27 22:52:00,738 | INFO     | all data control threads have been joined
[2025-11-27 23:52:58] 2025-11-27 22:52:01,052 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:52:58] 2025-11-27 22:52:01,053 | INFO     | aborting loop
[2025-11-27 23:52:58] 2025-11-27 22:52:01,473 | INFO     | all payload control threads have been joined
[2025-11-27 23:52:58] 2025-11-27 22:52:01,477 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:01,745 | INFO     | [data] control thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:01,796 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:01,884 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,058 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,130 | INFO     | all job control threads have been joined
[2025-11-27 23:52:58] 2025-11-27 22:52:02,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:52:58] 2025-11-27 22:52:02,408 | INFO     | [job] validate thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,461 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,479 | INFO     | [payload] control thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,483 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,768 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:02,797 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:52:58] 2025-11-27 22:52:02,933 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:03,136 | INFO     | [job] control thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:03,803 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:06,367 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:52:58] 2025-11-27 22:52:29,928 | INFO     | PID=6178 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:52:58] 2025-11-27 22:52:29,928 | INFO     | .. there are 9 such processes running
[2025-11-27 23:52:58] 2025-11-27 22:52:29,929 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:52:58] 2025-11-27 22:52:29,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:52:58] 2025-11-27 22:52:29,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:52:58] 2025-11-27 22:52:47,698 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:52:58] 2025-11-27 22:52:49,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401606436672)>', '<ExcThread(monitor, started 140401289697024)>']
[2025-11-27 23:52:58] 2025-11-27 22:52:50,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:52:58] 2025-11-27 22:52:50,050 | INFO     | [monitor] control thread has ended
[2025-11-27 23:52:58] 2025-11-27 22:52:54,528 | INFO     | all workflow threads have been joined
[2025-11-27 23:52:58] 2025-11-27 22:52:54,529 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:52:58] 2025-11-27 22:52:54,529 | INFO     | traces error code: 0
[2025-11-27 23:52:58] 2025-11-27 22:52:54,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:52:58] 2025-11-27 22:52:54,707 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:52:58] 2025-11-27 22:52:54,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:52:58] 2025-11-27 22:52:54,740 [wrapper] pilotpid: 6178
[2025-11-27 23:52:58] 2025-11-27 22:52:54,753 [wrapper] Pilot exit status: 0
[2025-11-27 23:52:58] 2025-11-27 22:52:55,166 [wrapper] pandaids: 6895365710
[2025-11-27 23:52:58] 2025-11-27 22:52:55,408 [wrapper] cleanup supervisor_pilot  1099 6179
[2025-11-27 23:52:58] 2025-11-27 22:52:55,477 [wrapper] Test setup, not cleaning
[2025-11-27 23:52:58] 2025-11-27 22:52:55,550 [wrapper] apfmon messages muted
[2025-11-27 23:52:58] 2025-11-27 22:52:55,611 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:52:58] 2025-11-27 22:52:55,712 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:52:58]  *** Error codes and diagnostics ***
[2025-11-27 23:52:58]     "exeErrorCode": 0,
[2025-11-27 23:52:58]     "exeErrorDiag": "",
[2025-11-27 23:52:58]     "pilotErrorCode": 0,
[2025-11-27 23:52:58]     "pilotErrorDiag": "",
[2025-11-27 23:52:58]  *** Listing of results directory ***
[2025-11-27 23:52:58] total 1331220
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-27 23:52:58] -rwx------. 1 boinc boinc     36292 Nov 23 18:39 runpilot2-wrapper.sh
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc      5112 Nov 23 18:39 queuedata.json
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:52:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:05 run_atlas
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:05 job.xml
[2025-11-27 23:52:58] -rw-r--r--. 2 boinc boinc 408565950 Nov 27 00:05 EVNT.47483658._001180.pool.root.1
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc      6390 Nov 27 00:05 init_data.xml
[2025-11-27 23:52:58] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:05 start_atlas.sh
[2025-11-27 23:52:58] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:05 shared
[2025-11-27 23:52:58] -rw-r--r--. 2 boinc boinc    590104 Nov 27 00:05 input.tar.gz
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:05 boinc_lockfile
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc      2785 Nov 27 00:06 pandaJob.out
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc    991546 Nov 27 00:10 agis_schedconf.cvmfs.json
[2025-11-27 23:52:58] drwx------. 5 boinc boinc      4096 Nov 27 00:10 pilot3
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:24 boinc_task_state.xml
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc 923031660 Nov 27 23:49 HITS.47556149._001662.pool.root.1
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc      1030 Nov 27 23:50 memory_monitor_summary.json
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc   1516240 Nov 27 23:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc   2469139 Nov 27 23:50 log.47556149._001662.job.log.tgz.1
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc      8628 Nov 27 23:51 heartbeat.json
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc        95 Nov 27 23:52 pilot_heartbeat.json
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:52 wrapper_checkpoint.txt
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:52 boinc_mmap_file
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc      4883 Nov 27 23:52 pilotlog.txt
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc  11360864 Nov 27 23:52 log.47556149._001662.job.log.1
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc       353 Nov 27 23:52 output.list
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:52 runtime_log
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc  13854720 Nov 27 23:52 result.tar.gz
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc       662 Nov 27 23:52 S9uMDmYETh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQfIKDmqoEk1n.diag
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:52 runtime_log.err
[2025-11-27 23:52:58] -rw-r--r--. 1 boinc boinc     21380 Nov 27 23:52 stderr.txt
[2025-11-27 23:52:58] HITS file was successfully produced:
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc 923031660 Nov 27 23:49 shared/HITS.pool.root.1
[2025-11-27 23:52:58]  *** Contents of shared directory: ***
[2025-11-27 23:52:58] total 1314520
[2025-11-27 23:52:58] -rw-r--r--. 2 boinc boinc 408565950 Nov 27 00:05 ATLAS.root_0
[2025-11-27 23:52:58] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:05 start_atlas.sh
[2025-11-27 23:52:58] -rw-r--r--. 2 boinc boinc    590104 Nov 27 00:05 input.tar.gz
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc 923031660 Nov 27 23:49 HITS.pool.root.1
[2025-11-27 23:52:58] -rw-------. 1 boinc boinc  13854720 Nov 27 23:52 result.tar.gz
23:53:00 (2378): run_atlas exited; CPU time 319538.198200
23:53:00 (2378): called boinc_finish(0)

</stderr_txt>
]]>

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