Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 09:57:35 (25296): vboxwrapper version 26210
2025-11-24 09:57:35 (25296): BOINC client version: 8.2.7
2025-11-24 09:57:36 (25296): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-24 09:57:36 (25296): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 09:57:36 (25296): Create VM. (boinc_546b8cc40e449e77, slot#2)
2025-11-24 09:57:37 (25296): Setting Memory Size for VM. (4300MB)
2025-11-24 09:57:37 (25296): Setting CPU Count for VM. (3)
2025-11-24 09:57:38 (25296): Setting Chipset Options for VM.
2025-11-24 09:57:38 (25296): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 09:57:38 (25296): Setting Boot Options for VM.
2025-11-24 09:57:39 (25296): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 09:57:39 (25296): Enabling VM Network Access.
2025-11-24 09:57:39 (25296): Disabling USB Support for VM.
2025-11-24 09:57:39 (25296): Disabling COM Port Support for VM.
2025-11-24 09:57:40 (25296): Disabling LPT Port Support for VM.
2025-11-24 09:57:40 (25296): Disabling Audio Support for VM.
2025-11-24 09:57:40 (25296): Disabling Clipboard Support for VM.
2025-11-24 09:57:40 (25296): Disabling Drag and Drop Support for VM.
2025-11-24 09:57:41 (25296): Adding storage controller(s) to VM.
2025-11-24 09:57:41 (25296): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 09:57:41 (25296): Adding VirtualBox Guest Additions to VM.
2025-11-24 09:57:42 (25296): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 09:57:42 (25296): forwarding host port 60148 to guest port 80
2025-11-24 09:57:42 (25296): Enabling remote desktop for VM.
2025-11-24 09:57:43 (25296): Enabling shared directory for VM.
2025-11-24 09:57:43 (25296): Starting VM using VBoxManage interface. (boinc_546b8cc40e449e77, slot#2)
2025-11-24 09:57:48 (25296): Successfully started VM. (PID = '24592')
2025-11-24 09:57:48 (25296): Reporting VM Process ID to BOINC.
2025-11-24 09:57:48 (25296): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-24 09:57:48 (25296): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 09:57:48 (25296): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 09:57:48 (25296): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 09:57:48 (25296): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 09:57:48 (25296): Detected: Web Application Enabled (http://localhost:60148)
2025-11-24 09:57:48 (25296): Detected: Remote Desktop Enabled (localhost:60149)
2025-11-24 09:57:48 (25296): Preference change detected
2025-11-24 09:57:48 (25296): Setting CPU throttle for VM. (100%)
2025-11-24 09:57:48 (25296): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 09:57:50 (25296): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 09:57:50 (25296): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 09:57:52 (25296): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 09:57:52 (25296): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 09:57:52 (25296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 09:57:57 (25296): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 09:57:57 (25296): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 09:58:00 (25296): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000072 main     Log opened 2025-11-24T09:57:58.271078000Z
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000141 main     OS Product: Linux
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000156 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000167 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000180 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000180 main     Process ID: 1289
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000181 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 09:58:00 (25296): Guest Log: 00:00:00.000555 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 09:58:00 (25296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 09:58:00 (25296): Guest Log: [INFO] Mounting shared directory
2025-11-24 09:58:00 (25296): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 09:58:09 (25296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 09:58:09 (25296): Guest Log: [INFO] Detected branch: prod
2025-11-24 09:58:09 (25296): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 09:58:09 (25296): Guest Log: Copying input files
2025-11-24 09:58:10 (25296): Guest Log: 00:00:10.002613 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 374 555 000ns (GuestNow=1 763 996 289 647 067 000 ns GuestLast=1 763 978 278 272 512 000 ns fSetTimeLastLoop=true )
2025-11-24 09:58:10 (25296): Guest Log: Copied input files into RunAtlas.
2025-11-24 09:58:10 (25296): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 09:58:10 (25296): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 09:58:10 (25296): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 09:58:10 (25296): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 09:58:21 (25296): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 09:58:21 (25296): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 09:58:21 (25296): Guest Log: 2.6.3.0 1588 0 30192 153248 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 09:58:22 (25296): Guest Log: copied the webapp to /var/www
2025-11-24 09:58:22 (25296): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-24 09:58:22 (25296): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-24 09:58:22 (25296): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 09:58:22 (25296): Guest Log:  *** Starting ATLAS job. (PandaID=6895365734 taskID=47556137) ***
2025-11-24 11:37:50 (25296): Status Report: Elapsed Time: '6000.000000'
2025-11-24 11:37:50 (25296): Status Report: CPU Time: '16602.078125'
2025-11-24 13:17:52 (25296): Status Report: Elapsed Time: '12000.000000'
2025-11-24 13:17:52 (25296): Status Report: CPU Time: '34520.140625'
2025-11-24 14:57:55 (25296): Status Report: Elapsed Time: '18000.000000'
2025-11-24 14:57:55 (25296): Status Report: CPU Time: '52442.656250'
2025-11-24 16:37:57 (25296): Status Report: Elapsed Time: '24000.000000'
2025-11-24 16:37:57 (25296): Status Report: CPU Time: '70360.343750'
2025-11-24 18:18:00 (25296): Status Report: Elapsed Time: '30000.000000'
2025-11-24 18:18:00 (25296): Status Report: CPU Time: '88281.609375'
2025-11-24 19:58:02 (25296): Status Report: Elapsed Time: '36000.000000'
2025-11-24 19:58:02 (25296): Status Report: CPU Time: '106202.390625'
2025-11-24 21:38:04 (25296): Status Report: Elapsed Time: '42000.000000'
2025-11-24 21:38:04 (25296): Status Report: CPU Time: '124121.093750'
2025-11-24 23:18:07 (25296): Status Report: Elapsed Time: '48000.000000'
2025-11-24 23:18:07 (25296): Status Report: CPU Time: '142041.156250'
2025-11-25 00:58:09 (25296): Status Report: Elapsed Time: '54000.000000'
2025-11-25 00:58:09 (25296): Status Report: CPU Time: '159957.156250'
2025-11-25 02:38:12 (25296): Status Report: Elapsed Time: '60000.000000'
2025-11-25 02:38:12 (25296): Status Report: CPU Time: '177875.046875'
2025-11-25 04:18:14 (25296): Status Report: Elapsed Time: '66000.000000'
2025-11-25 04:18:14 (25296): Status Report: CPU Time: '195785.531250'
2025-11-25 05:36:15 (25296): Guest Log:  *** Job finished ***
2025-11-25 05:36:15 (25296): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:35:56,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:35:56,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:07,259 | INFO     | [monitor] cgroup control has ended
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:09,020 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140138097362752)>', '<ExcThread(monitor, started 140136981452544)>']
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:09,429 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:09,429 | INFO     | [monitor] control thread has ended
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,026 | INFO     | all workflow threads have been joined
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,026 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,026 | INFO     | traces error code: 0
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,135 [wrapper] ==== pilot stdout END ====
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,138 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,140 [wrapper] pilotpid: 5973
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,143 [wrapper] Pilot exit status: 0
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,152 [wrapper] pandaids: 6895365734
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,177 [wrapper] cleanup supervisor_pilot 11199 5974
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,182 [wrapper] Test setup, not cleaning
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,185 [wrapper] apfmon messages muted
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,188 [wrapper] ==== wrapper stdout END ====
2025-11-25 05:36:15 (25296): Guest Log: 2025-11-25 10:36:14,191 [wrapper] ==== wrapper stderr END ====
2025-11-25 05:36:15 (25296): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 05:36:15 (25296): Guest Log:     "exeErrorCode": 0,
2025-11-25 05:36:15 (25296): Guest Log:     "exeErrorDiag": "",
2025-11-25 05:36:15 (25296): Guest Log:     "pilotErrorCode": 0,
2025-11-25 05:36:15 (25296): Guest Log:     "pilotErrorDiag": "",
2025-11-25 05:36:15 (25296): Guest Log:  *** Listing of results directory ***
2025-11-25 05:36:15 (25296): Guest Log: total 938532
2025-11-25 05:36:15 (25296): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 17:39 pilot3.tar.gz
2025-11-25 05:36:15 (25296): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 17:46 runpilot2-wrapper.sh
2025-11-25 05:36:15 (25296): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 17:46 queuedata.json
2025-11-25 05:36:15 (25296): Guest Log: -rwxr-xr-x. 1 atlas atlas     10550 Nov 24 14:58 init_data.xml
2025-11-25 05:36:15 (25296): Guest Log: -rwxr-xr-x. 1 atlas atlas    590094 Nov 24 14:58 input.tar.gz
2025-11-25 05:36:15 (25296): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 14:58 start_atlas.sh
2025-11-25 05:36:15 (25296): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 14:58 EVNT.47483658._000831.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 05:36:15 (25296): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 24 14:58 pandaJob.out
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas    988283 Nov 24 14:59 agis_schedconf.cvmfs.json
2025-11-25 05:36:15 (25296): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 14:59 pilot3
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas 934867174 Nov 25 10:34 HITS.47556137._008177.pool.root.1
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 10:35 pilot_heartbeat.json
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 25 10:35 memory_monitor_summary.json
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 10:35 agis_ddmendpoints.agis.ALL.json
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas   1682298 Nov 25 10:35 log.47556137._008177.job.log.tgz.1
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas      8657 Nov 25 10:35 heartbeat.json
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 25 10:36 pilotlog.txt
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas   9490099 Nov 25 10:36 log.47556137._008177.job.log.1
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 10:36 output.list
2025-11-25 05:36:15 (25296): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 10:36 runtime_log
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas  11192320 Nov 25 10:36 result.tar.gz
2025-11-25 05:36:15 (25296): Guest Log: -rw-r--r--. 1 atlas atlas      8738 Nov 25 10:36 runtime_log.err
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas       659 Nov 25 10:36 JZEODmdLTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk4KKDmDxRW9m.diag
2025-11-25 05:36:15 (25296): Guest Log: Looking for outputfile HITS.47556137._008177.pool.root.1
2025-11-25 05:36:15 (25296): Guest Log: HITS file was successfully produced
2025-11-25 05:36:15 (25296): Guest Log: -rw-------. 1 atlas atlas 934867174 Nov 25 10:34 /home/atlas/RunAtlas/HITS.47556137._008177.pool.root.1
2025-11-25 05:36:17 (25296): Guest Log: Successfully finished the ATLAS job!
2025-11-25 05:36:17 (25296): Guest Log: Copying the results back to the shared directory!
2025-11-25 05:36:17 (25296): Guest Log:  *** Contents of shared directory: ***
2025-11-25 05:36:17 (25296): Guest Log: total 1324724
2025-11-25 05:36:17 (25296): Guest Log: -rwxrwxrwx. 1 root root 409827837 Nov 24 14:57 ATLAS.root_0
2025-11-25 05:36:17 (25296): Guest Log: -rwxrwxrwx. 1 root root 934867174 Nov 25  2025 HITS.pool.root.1
2025-11-25 05:36:17 (25296): Guest Log: -rwxrwxrwx. 1 root root     10550 Nov 24 14:57 init_data.xml
2025-11-25 05:36:17 (25296): Guest Log: -rwxrwxrwx. 1 root root    590094 Nov 24 14:43 input.tar.gz
2025-11-25 05:36:17 (25296): Guest Log: -rwxrwxrwx. 1 root root  11192320 Nov 25  2025 result.tar.gz
2025-11-25 05:36:17 (25296): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 14:43 start_atlas.sh
2025-11-25 05:36:17 (25296): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 05:36:17 (25296): VM Completion File Detected.
2025-11-25 05:36:17 (25296): Powering off VM.
2025-11-25 05:36:18 (25296): Successfully stopped VM.
2025-11-25 05:36:18 (25296): Deregistering VM. (boinc_546b8cc40e449e77, slot#2)
2025-11-25 05:36:18 (25296): Removing network bandwidth throttle group from VM.
2025-11-25 05:36:18 (25296): Removing VM from VirtualBox.
2025-11-25 05:36:23 (25296): called boinc_finish(0)

</stderr_txt>
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