Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:05:45 (25970): wrapper (7.7.26015): starting
22:05:45 (25970): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 22:05:45] Arguments: --nthreads 8
[2025-11-26 22:05:45] Threads: 8
[2025-11-26 22:05:45] Checking for CVMFS
[2025-11-26 22:05:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:05:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:05:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:05:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:05:47] 2.11.2.0 22738 285740 135408 153334 0 85 21378060 25165824 1288 130560 12 141415089 99.882 77049888 2871 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 22:05:47] CVMFS is ok
[2025-11-26 22:05:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:05:47] Checking for apptainer binary...
[2025-11-26 22:05:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:05:47] Running /usr/bin/apptainer --version
[2025-11-26 22:05:47] apptainer version 1.3.2-1.el7
[2025-11-26 22:05:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:05:57] cg-vwn395.simple-grid.lan
[2025-11-26 22:05:57] apptainer works
[2025-11-26 22:05:57] Set ATHENA_PROC_NUMBER=8
[2025-11-26 22:05:57] Set ATHENA_CORE_NUMBER=8
[2025-11-26 22:05:58] Starting ATLAS job with PandaID=6895365753
[2025-11-26 22:05:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:12:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:12:19] 2025-11-27 20:11:33,541 | INFO     | monitor loop #5590: job 0:6895365753 is in state 'finished'
[2025-11-27 21:12:19] 2025-11-27 20:11:33,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:12:19] 2025-11-27 20:11:34,382 | INFO     | PID=29794 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:12:19] 2025-11-27 20:11:34,382 | INFO     | .. there are 9 such processes running
[2025-11-27 21:12:19] 2025-11-27 20:11:35,383 | INFO     | time since job start (82912s) is within the limit (172800.0s)
[2025-11-27 21:12:19] 2025-11-27 20:11:36,046 | INFO     | monitor loop #5591: job 0:6895365753 is in state 'finished'
[2025-11-27 21:12:19] 2025-11-27 20:11:36,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:12:19] 2025-11-27 20:11:37,389 | INFO     | time since job start (82914s) is within the limit (172800.0s)
[2025-11-27 21:12:19] 2025-11-27 20:11:38,551 | INFO     | monitor loop #5592: job 0:6895365753 is in state 'finished'
[2025-11-27 21:12:19] 2025-11-27 20:11:38,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:12:19] 2025-11-27 20:11:39,398 | INFO     | time since job start (82916s) is within the limit (172800.0s)
[2025-11-27 21:12:19] 2025-11-27 20:11:41,063 | INFO     | monitor loop #5593: job 0:6895365753 is in state 'finished'
[2025-11-27 21:12:19] 2025-11-27 20:11:41,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:12:19] 2025-11-27 20:11:41,406 | INFO     | time since job start (82918s) is within the limit (172800.0s)
[2025-11-27 21:12:19] 2025-11-27 20:11:41,879 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:12:19] 2025-11-27 20:11:41,880 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 21:12:19] 2025-11-27 20:11:41,882 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895365753/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:12:19] 2025-11-27 20:11:41,883 | INFO     | extracted standard info from prmon json
[2025-11-27 21:12:19] 2025-11-27 20:11:41,883 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:12:19] 2025-11-27 20:11:41,883 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:12:19] 2025-11-27 20:11:41,908 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:12:19] 2025-11-27 20:11:41,910 | INFO     | sum of square deviations: 762919677467.3602
[2025-11-27 21:12:19] 2025-11-27 20:11:41,959 | INFO     | sum of deviations: 2457624041156.7505
[2025-11-27 21:12:19] 2025-11-27 20:11:41,959 | INFO     | mean x: 1764233041.5866666
[2025-11-27 21:12:19] 2025-11-27 20:11:41,959 | INFO     | mean y: 2840825.6303703706
[2025-11-27 21:12:19] 2025-11-27 20:11:41,959 | INFO     | intersect: -5680354490.028515
[2025-11-27 21:12:19] 2025-11-27 20:11:41,961 | INFO     | chi2: 20.03575086672655
[2025-11-27 21:12:19] 2025-11-27 20:11:41,963 | INFO     | sum of square deviations: 754474580498.934
[2025-11-27 21:12:19] 2025-11-27 20:11:42,013 | INFO     | sum of deviations: 2903415145567.888
[2025-11-27 21:12:19] 2025-11-27 20:11:42,013 | INFO     | mean x: 1764232889.0907063
[2025-11-27 21:12:19] 2025-11-27 20:11:42,013 | INFO     | mean y: 2848874.5747211897
[2025-11-27 21:12:19] 2025-11-27 20:11:42,013 | INFO     | intersect: -6786379845.50697
[2025-11-27 21:12:19] 2025-11-27 20:11:42,015 | INFO     | chi2: 16.815873582286244
[2025-11-27 21:12:19] 2025-11-27 20:11:42,015 | INFO     | current chi2=16.815873582286244 (change=16.070659422041263 %)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,015 | INFO     | right removable region: 1344
[2025-11-27 21:12:19] 2025-11-27 20:11:42,017 | INFO     | sum of square deviations: 754473685628.9341
[2025-11-27 21:12:19] 2025-11-27 20:11:42,065 | INFO     | sum of deviations: 1912675050345.9543
[2025-11-27 21:12:19] 2025-11-27 20:11:42,065 | INFO     | mean x: 1764233194.0907063
[2025-11-27 21:12:19] 2025-11-27 20:11:42,065 | INFO     | mean y: 2850663.8364312267
[2025-11-27 21:12:19] 2025-11-27 20:11:42,065 | INFO     | intersect: -4469677507.264089
[2025-11-27 21:12:19] 2025-11-27 20:11:42,067 | INFO     | chi2: 15.72068202677517
[2025-11-27 21:12:19] 2025-11-27 20:11:42,067 | INFO     | current chi2=15.72068202677517 (change=21.536846153928927 %)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,067 | INFO     | left removable region: 10
[2025-11-27 21:12:19] 2025-11-27 20:11:42,069 | INFO     | sum of square deviations: 736113458760.2406
[2025-11-27 21:12:19] 2025-11-27 20:11:42,129 | INFO     | sum of deviations: 2028917016425.9731
[2025-11-27 21:12:19] 2025-11-27 20:11:42,130 | INFO     | mean x: 1764233163.5997002
[2025-11-27 21:12:19] 2025-11-27 20:11:42,130 | INFO     | mean y: 2868486.447526237
[2025-11-27 21:12:19] 2025-11-27 20:11:42,130 | INFO     | intersect: -4859809466.213481
[2025-11-27 21:12:19] 2025-11-27 20:11:42,132 | INFO     | chi2: 9.099466492784343
[2025-11-27 21:12:19] 2025-11-27 20:11:42,132 | INFO     | current memory leak: 2.76 B/s (using 1334 data points, chi2=9.10)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,133 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,133 | INFO     | ..............................
[2025-11-27 21:12:19] 2025-11-27 20:11:42,133 | INFO     | . Timing measurements:
[2025-11-27 21:12:19] 2025-11-27 20:11:42,133 | INFO     | . get job = 0 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,133 | INFO     | . initial setup = 6 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,133 | INFO     | . payload setup = 163 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,134 | INFO     | . stage-in = 0 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,134 | INFO     | . payload execution = 82460 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,134 | INFO     | . stage-out = 3 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,134 | INFO     | . log creation = 1 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,134 | INFO     | ..............................
[2025-11-27 21:12:19] 2025-11-27 20:11:42,582 | INFO     | 
[2025-11-27 21:12:19] 2025-11-27 20:11:42,582 | INFO     | job summary report
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | --------------------------------------------------
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | PanDA job id: 6895365753
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | task id: 47556137
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | errors: (none)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | pilot state: finished 
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | transexitcode: 0
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | exeerrorcode: 0
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | exeerrordiag: 
[2025-11-27 21:12:19] 2025-11-27 20:11:42,583 | INFO     | exitcode: 0
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | exitmsg: OK
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | cpuconsumptiontime: 311800 s
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | nevents: 1000
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | neventsw: 0
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | pid: 3955
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | pgrp: 3955
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | corecount: 8
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | event service: False
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 66: 2284638, 76: 2284666, 87: 2284722, 90: 2285012, 98: 2285320, 8
[2025-11-27 21:12:19] 2025-11-27 20:11:42,584 | INFO     | --------------------------------------------------
[2025-11-27 21:12:19] 2025-11-27 20:11:42,585 | INFO     | 
[2025-11-27 21:12:19] 2025-11-27 20:11:42,585 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 21:12:19] 2025-11-27 20:11:42,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | job 6895365753 has completed (purged errors)
[2025-11-27 21:12:19] 2025-11-27 20:11:42,937 | INFO     | overall cleanup function is called
[2025-11-27 21:12:19] 2025-11-27 20:11:43,955 | INFO     | --- collectZombieJob: --- 10, [3955]
[2025-11-27 21:12:19] 2025-11-27 20:11:43,955 | INFO     | zombie collector waiting for pid 3955
[2025-11-27 21:12:19] 2025-11-27 20:11:43,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:12:19] 2025-11-27 20:11:43,956 | INFO     | collected zombie processes
[2025-11-27 21:12:19] 2025-11-27 20:11:43,956 | INFO     | will attempt to kill all subprocesses of pid=3955
[2025-11-27 21:12:19] 2025-11-27 20:11:44,066 | INFO     | process IDs to be killed: [3955] (in reverse order)
[2025-11-27 21:12:19] 2025-11-27 20:11:45,136 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:12:19] 2025-11-27 20:11:45,136 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:12:19] 2025-11-27 20:11:45,139 | INFO     | did not find any defunct processes belonging to 3955
[2025-11-27 21:12:19] 2025-11-27 20:11:45,141 | INFO     | did not find any defunct processes belonging to 3955
[2025-11-27 21:12:19] 2025-11-27 20:11:45,152 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:12:19] 2025-11-27 20:11:45,152 | INFO     | ready for new job
[2025-11-27 21:12:19] 2025-11-27 20:11:45,152 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:12:19] 2025-11-27 20:11:45,157 | INFO     | ***************************************
[2025-11-27 21:12:19] 2025-11-27 20:11:45,158 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:12:19] 2025-11-27 20:11:45,158 | INFO     | ***************************************
[2025-11-27 21:12:19] 2025-11-27 20:11:45,158 | INFO     | 
[2025-11-27 21:12:19] 2025-11-27 20:11:45,159 | INFO     | pilot is running in a VM
[2025-11-27 21:12:19] 2025-11-27 20:11:45,159 | INFO     | architecture information:
[2025-11-27 21:12:19] 2025-11-27 20:11:45,159 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:12:19] 2025-11-27 20:11:45,363 | INFO     | cat /etc/os-release:
[2025-11-27 21:12:19] NAME="CentOS Linux"
[2025-11-27 21:12:19] VERSION="7 (Core)"
[2025-11-27 21:12:19] ID="centos"
[2025-11-27 21:12:19] ID_LIKE="rhel fedora"
[2025-11-27 21:12:19] VERSION_ID="7"
[2025-11-27 21:12:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:12:19] ANSI_COLOR="0;31"
[2025-11-27 21:12:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:12:19] HOME_URL="https://www.centos.org/"
[2025-11-27 21:12:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:12:19] 
[2025-11-27 21:12:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:12:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:12:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:12:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:12:19] 
[2025-11-27 21:12:19] 2025-11-27 20:11:45,363 | INFO     | ***************************************
[2025-11-27 21:12:19] 2025-11-27 20:11:45,866 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 21:12:19] 2025-11-27 20:11:46,092 | INFO     | sufficient remaining disk space (495243493376 B)
[2025-11-27 21:12:19] 2025-11-27 20:11:46,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:12:19] 2025-11-27 20:11:46,092 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:12:19] 2025-11-27 20:11:46,092 | INFO     | update_server=False
[2025-11-27 21:12:19] 2025-11-27 20:11:46,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:12:19] 2025-11-27 20:11:46,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:12:19] 2025-11-27 20:11:46,113 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 21:12:19] 2025-11-27 20:11:46,113 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 21:12:19] 2025-11-27 20:11:46,114 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:12:19] 2025-11-27 20:11:46,114 | INFO     | will abort loop
[2025-11-27 21:12:19] 2025-11-27 20:11:46,171 | INFO     | all data control threads have been joined
[2025-11-27 21:12:19] 2025-11-27 20:11:46,405 | INFO     | all payload control threads have been joined
[2025-11-27 21:12:19] 2025-11-27 20:11:46,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:12:19] 2025-11-27 20:11:47,098 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,119 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,177 | INFO     | [data] control thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:12:19] 2025-11-27 20:11:47,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,294 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,411 | INFO     | [payload] control thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,437 | INFO     | [job] validate thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,438 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,508 | INFO     | all job control threads have been joined
[2025-11-27 21:12:19] 2025-11-27 20:11:47,716 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,765 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:47,805 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:48,245 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:48,268 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:48,514 | INFO     | [job] control thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:48,837 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:11:50,101 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:12:19] 2025-11-27 20:12:08,051 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:12:19] 2025-11-27 20:12:10,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560689809216)>', '<ExcThread(monitor, started 140560086054656)>']
[2025-11-27 21:12:19] 2025-11-27 20:12:14,598 | INFO     | PID=29794 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:12:19] 2025-11-27 20:12:14,602 | INFO     | .. there are 9 such processes running
[2025-11-27 21:12:19] 2025-11-27 20:12:14,602 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:12:19] 2025-11-27 20:12:14,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:12:19] 2025-11-27 20:12:14,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:12:19] 2025-11-27 20:12:14,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:12:19] 2025-11-27 20:12:14,603 | INFO     | [monitor] control thread has ended
[2025-11-27 21:12:19] 2025-11-27 20:12:15,090 | INFO     | all workflow threads have been joined
[2025-11-27 21:12:19] 2025-11-27 20:12:15,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:12:19] 2025-11-27 20:12:15,091 | INFO     | traces error code: 0
[2025-11-27 21:12:19] 2025-11-27 20:12:15,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:12:19] 2025-11-27 20:12:15,457 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:12:19] 2025-11-27 20:12:15,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:12:19] 2025-11-27 20:12:15,601 [wrapper] pilotpid: 29794
[2025-11-27 21:12:19] 2025-11-27 20:12:15,704 [wrapper] Pilot exit status: 0
[2025-11-27 21:12:19] 2025-11-27 20:12:16,072 [wrapper] pandaids: 6895365753
[2025-11-27 21:12:19] 2025-11-27 20:12:17,091 [wrapper] cleanup supervisor_pilot  7521 29795
[2025-11-27 21:12:19] 2025-11-27 20:12:17,144 [wrapper] Test setup, not cleaning
[2025-11-27 21:12:19] 2025-11-27 20:12:17,253 [wrapper] apfmon messages muted
[2025-11-27 21:12:19] 2025-11-27 20:12:17,338 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:12:19] 2025-11-27 20:12:17,362 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:12:19]  *** Error codes and diagnostics ***
[2025-11-27 21:12:19]     "exeErrorCode": 0,
[2025-11-27 21:12:19]     "exeErrorDiag": "",
[2025-11-27 21:12:19]     "pilotErrorCode": 0,
[2025-11-27 21:12:19]     "pilotErrorDiag": "",
[2025-11-27 21:12:19]  *** Listing of results directory ***
[2025-11-27 21:12:19] total 1331872
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:39 pilot3.tar.gz
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc      5112 Nov 23 18:48 queuedata.json
[2025-11-27 21:12:19] -rwx------. 1 boinc boinc     36292 Nov 23 18:52 runpilot2-wrapper.sh
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc       100 Nov 26 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:12:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 22:05 run_atlas
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc       105 Nov 26 22:05 job.xml
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc      6392 Nov 26 22:05 init_data.xml
[2025-11-27 21:12:19] -rw-r--r--. 2 boinc boinc 411253397 Nov 26 22:05 EVNT.47483658._000833.pool.root.1
[2025-11-27 21:12:19] -rw-r--r--. 2 boinc boinc     15847 Nov 26 22:05 start_atlas.sh
[2025-11-27 21:12:19] drwxrwx--x. 2 boinc boinc        68 Nov 26 22:05 shared
[2025-11-27 21:12:19] -rw-r--r--. 2 boinc boinc    590103 Nov 26 22:05 input.tar.gz
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc         0 Nov 26 22:05 boinc_lockfile
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc      2785 Nov 26 22:05 pandaJob.out
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc    991538 Nov 26 22:09 agis_schedconf.cvmfs.json
[2025-11-27 21:12:19] drwx------. 5 boinc boinc      4096 Nov 26 22:09 pilot3
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc       533 Nov 27 20:44 boinc_task_state.xml
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc 921727041 Nov 27 21:08 HITS.47556137._008196.pool.root.1
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc      1028 Nov 27 21:09 memory_monitor_summary.json
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc   1516240 Nov 27 21:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc   2445768 Nov 27 21:10 log.47556137._008196.job.log.tgz.1
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc        95 Nov 27 21:11 pilot_heartbeat.json
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc      7944 Nov 27 21:11 heartbeat.json
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc      8192 Nov 27 21:11 boinc_mmap_file
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc        29 Nov 27 21:11 wrapper_checkpoint.txt
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc      5070 Nov 27 21:12 pilotlog.txt
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc  11028817 Nov 27 21:12 log.47556137._008196.job.log.1
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc       353 Nov 27 21:12 output.list
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc       620 Nov 27 21:12 runtime_log
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc  13496320 Nov 27 21:12 result.tar.gz
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc      8817 Nov 27 21:12 runtime_log.err
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc       662 Nov 27 21:12 8Q3NDmZRTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz4KKDm1lY5Im.diag
[2025-11-27 21:12:19] -rw-r--r--. 1 boinc boinc     21483 Nov 27 21:12 stderr.txt
[2025-11-27 21:12:19] HITS file was successfully produced:
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc 921727041 Nov 27 21:08 shared/HITS.pool.root.1
[2025-11-27 21:12:19]  *** Contents of shared directory: ***
[2025-11-27 21:12:19] total 1315520
[2025-11-27 21:12:19] -rw-r--r--. 2 boinc boinc 411253397 Nov 26 22:05 ATLAS.root_0
[2025-11-27 21:12:19] -rw-r--r--. 2 boinc boinc     15847 Nov 26 22:05 start_atlas.sh
[2025-11-27 21:12:19] -rw-r--r--. 2 boinc boinc    590103 Nov 26 22:05 input.tar.gz
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc 921727041 Nov 27 21:08 HITS.pool.root.1
[2025-11-27 21:12:19] -rw-------. 1 boinc boinc  13496320 Nov 27 21:12 result.tar.gz
21:12:20 (25970): run_atlas exited; CPU time 312346.434149
21:12:20 (25970): called boinc_finish(0)

</stderr_txt>
]]>

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