Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:40:23 (2826): wrapper (7.7.26015): starting
03:40:23 (2826): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:40:23] Arguments: --nthreads 8
[2025-11-27 03:40:23] Threads: 8
[2025-11-27 03:40:23] Checking for CVMFS
[2025-11-27 03:40:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:40:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:40:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:40:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:40:25] 2.11.2.0 32446 173027 137164 153343 3 85 13845055 25165825 1288 130560 12 59545155 99.898 28859960 2314 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 03:40:25] CVMFS is ok
[2025-11-27 03:40:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:40:25] Checking for apptainer binary...
[2025-11-27 03:40:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:40:25] Running /usr/bin/apptainer --version
[2025-11-27 03:40:25] apptainer version 1.3.2-1.el7
[2025-11-27 03:40:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:40:32] cg-vwn269.simple-grid.lan
[2025-11-27 03:40:32] apptainer works
[2025-11-27 03:40:32] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:40:32] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:40:32] Starting ATLAS job with PandaID=6895355249
[2025-11-27 03:40:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:01:32]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:01:32] 2025-11-28 02:00:44,834 | INFO     | time since job start (83767s) is within the limit (172800.0s)
[2025-11-28 03:01:32] 2025-11-28 02:00:46,841 | INFO     | time since job start (83769s) is within the limit (172800.0s)
[2025-11-28 03:01:32] 2025-11-28 02:00:46,878 | INFO     | monitor loop #5631: job 0:6895355249 is in state 'finished'
[2025-11-28 03:01:32] 2025-11-28 02:00:46,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:32] 2025-11-28 02:00:48,850 | INFO     | time since job start (83771s) is within the limit (172800.0s)
[2025-11-28 03:01:32] 2025-11-28 02:00:49,389 | INFO     | monitor loop #5632: job 0:6895355249 is in state 'finished'
[2025-11-28 03:01:32] 2025-11-28 02:00:49,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:32] 2025-11-28 02:00:50,857 | INFO     | time since job start (83773s) is within the limit (172800.0s)
[2025-11-28 03:01:32] 2025-11-28 02:00:51,895 | INFO     | monitor loop #5633: job 0:6895355249 is in state 'finished'
[2025-11-28 03:01:32] 2025-11-28 02:00:51,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:32] 2025-11-28 02:00:52,075 | INFO     | PID=6632 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 03:01:32] 2025-11-28 02:00:52,075 | INFO     | .. there are 9 such processes running
[2025-11-28 03:01:32] 2025-11-28 02:00:53,079 | INFO     | time since job start (83776s) is within the limit (172800.0s)
[2025-11-28 03:01:32] 2025-11-28 02:00:54,405 | INFO     | monitor loop #5634: job 0:6895355249 is in state 'finished'
[2025-11-28 03:01:32] 2025-11-28 02:00:54,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:01:32] 2025-11-28 02:00:55,088 | INFO     | time since job start (83778s) is within the limit (172800.0s)
[2025-11-28 03:01:32] 2025-11-28 02:00:55,873 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:01:32] 2025-11-28 02:00:55,875 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 03:01:32] 2025-11-28 02:00:55,877 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895355249/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:01:32] 2025-11-28 02:00:55,878 | INFO     | extracted standard info from prmon json
[2025-11-28 03:01:32] 2025-11-28 02:00:55,878 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:01:32] 2025-11-28 02:00:55,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:01:32] 2025-11-28 02:00:55,902 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:01:32] 2025-11-28 02:00:55,904 | INFO     | sum of square deviations: 786903185236.7924
[2025-11-28 03:01:32] 2025-11-28 02:00:55,963 | INFO     | sum of deviations: 3280447985769.582
[2025-11-28 03:01:32] 2025-11-28 02:00:55,963 | INFO     | mean x: 1764253535.5865102
[2025-11-28 03:01:32] 2025-11-28 02:00:55,963 | INFO     | mean y: 2841324.151759531
[2025-11-28 03:01:32] 2025-11-28 02:00:55,964 | INFO     | intersect: -7351992238.327801
[2025-11-28 03:01:32] 2025-11-28 02:00:55,965 | INFO     | chi2: 23.679690724811657
[2025-11-28 03:01:32] 2025-11-28 02:00:55,967 | INFO     | sum of square deviations: 778281689535.8674
[2025-11-28 03:01:32] 2025-11-28 02:00:56,030 | INFO     | sum of deviations: 3735067767912.032
[2025-11-28 03:01:32] 2025-11-28 02:00:56,034 | INFO     | mean x: 1764253383.0905077
[2025-11-28 03:01:32] 2025-11-28 02:00:56,034 | INFO     | mean y: 2849364.902133922
[2025-11-28 03:01:32] 2025-11-28 02:00:56,034 | INFO     | intersect: -8464015568.719602
[2025-11-28 03:01:32] 2025-11-28 02:00:56,036 | INFO     | chi2: 20.40554491501441
[2025-11-28 03:01:32] 2025-11-28 02:00:56,036 | INFO     | current chi2=20.40554491501441 (change=13.826809850884523 %)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,036 | INFO     | right removable region: 1358
[2025-11-28 03:01:32] 2025-11-28 02:00:56,038 | INFO     | sum of square deviations: 778280785515.8673
[2025-11-28 03:01:32] 2025-11-28 02:00:56,096 | INFO     | sum of deviations: 2700640474624.149
[2025-11-28 03:01:32] 2025-11-28 02:00:56,097 | INFO     | mean x: 1764253688.0905077
[2025-11-28 03:01:32] 2025-11-28 02:00:56,097 | INFO     | mean y: 2851578.7711552614
[2025-11-28 03:01:32] 2025-11-28 02:00:56,097 | INFO     | intersect: -6119122657.563136
[2025-11-28 03:01:32] 2025-11-28 02:00:56,099 | INFO     | chi2: 18.84393472722417
[2025-11-28 03:01:32] 2025-11-28 02:00:56,099 | INFO     | current chi2=18.84393472722417 (change=20.42153359934117 %)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,099 | INFO     | left removable region: 10
[2025-11-28 03:01:32] 2025-11-28 02:00:56,101 | INFO     | sum of square deviations: 759534764421.6798
[2025-11-28 03:01:32] 2025-11-28 02:00:56,160 | INFO     | sum of deviations: 2796585125811.6367
[2025-11-28 03:01:32] 2025-11-28 02:00:56,161 | INFO     | mean x: 1764253657.5994065
[2025-11-28 03:01:32] 2025-11-28 02:00:56,161 | INFO     | mean y: 2870134.040059347
[2025-11-28 03:01:32] 2025-11-28 02:00:56,161 | INFO     | intersect: -6493061017.653839
[2025-11-28 03:01:32] 2025-11-28 02:00:56,163 | INFO     | chi2: 11.497788974903104
[2025-11-28 03:01:32] 2025-11-28 02:00:56,163 | INFO     | current memory leak: 3.68 B/s (using 1348 data points, chi2=11.50)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,164 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | ..............................
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . Timing measurements:
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . get job = 0 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . initial setup = 10 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . payload setup = 136 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . stage-in = 0 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . payload execution = 83337 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . stage-out = 5 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | . log creation = 1 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,165 | INFO     | ..............................
[2025-11-28 03:01:32] 2025-11-28 02:00:56,294 | INFO     | 
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | job summary report
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | --------------------------------------------------
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | PanDA job id: 6895355249
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | task id: 47556149
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | errors: (none)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | pilot state: finished 
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | transexitcode: 0
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | exeerrorcode: 0
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | exeerrordiag: 
[2025-11-28 03:01:32] 2025-11-28 02:00:56,295 | INFO     | exitcode: 0
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | exitmsg: OK
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | cpuconsumptiontime: 314584 s
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | nevents: 1000
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | neventsw: 0
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | pid: 13215
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | pgrp: 13215
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | corecount: 8
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | event service: False
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 3: 2284321, 13: 2284349, 24: 2284405, 35: 2284561, 46: 2284589, 56: 2284617, 67: 2284645, 78: 2284673, 88: 2285009, 99:
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | --------------------------------------------------
[2025-11-28 03:01:32] 2025-11-28 02:00:56,296 | INFO     | 
[2025-11-28 03:01:32] 2025-11-28 02:00:56,297 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-28 03:01:32] 2025-11-28 02:00:56,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,589 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,589 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,589 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,591 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,591 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,591 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:01:32] 2025-11-28 02:00:56,591 | INFO     | job 6895355249 has completed (purged errors)
[2025-11-28 03:01:32] 2025-11-28 02:00:56,591 | INFO     | overall cleanup function is called
[2025-11-28 03:01:32] 2025-11-28 02:00:57,613 | INFO     | --- collectZombieJob: --- 10, [13215]
[2025-11-28 03:01:32] 2025-11-28 02:00:57,614 | INFO     | zombie collector waiting for pid 13215
[2025-11-28 03:01:32] 2025-11-28 02:00:57,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:01:32] 2025-11-28 02:00:57,614 | INFO     | collected zombie processes
[2025-11-28 03:01:32] 2025-11-28 02:00:57,614 | INFO     | will attempt to kill all subprocesses of pid=13215
[2025-11-28 03:01:32] 2025-11-28 02:00:57,712 | INFO     | process IDs to be killed: [13215] (in reverse order)
[2025-11-28 03:01:32] 2025-11-28 02:00:58,536 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:01:32] 2025-11-28 02:00:58,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:01:32] 2025-11-28 02:00:58,540 | INFO     | did not find any defunct processes belonging to 13215
[2025-11-28 03:01:32] 2025-11-28 02:00:58,543 | INFO     | did not find any defunct processes belonging to 13215
[2025-11-28 03:01:32] 2025-11-28 02:00:58,609 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:01:32] 2025-11-28 02:00:58,609 | INFO     | ready for new job
[2025-11-28 03:01:32] 2025-11-28 02:00:58,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:01:32] 2025-11-28 02:00:58,615 | INFO     | ***************************************
[2025-11-28 03:01:32] 2025-11-28 02:00:58,615 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:01:32] 2025-11-28 02:00:58,615 | INFO     | ***************************************
[2025-11-28 03:01:32] 2025-11-28 02:00:58,615 | INFO     | 
[2025-11-28 03:01:32] 2025-11-28 02:00:58,616 | INFO     | pilot is running in a VM
[2025-11-28 03:01:32] 2025-11-28 02:00:58,616 | INFO     | architecture information:
[2025-11-28 03:01:32] 2025-11-28 02:00:58,623 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:01:32] 2025-11-28 02:00:58,829 | INFO     | cat /etc/os-release:
[2025-11-28 03:01:32] NAME="CentOS Linux"
[2025-11-28 03:01:32] VERSION="7 (Core)"
[2025-11-28 03:01:32] ID="centos"
[2025-11-28 03:01:32] ID_LIKE="rhel fedora"
[2025-11-28 03:01:32] VERSION_ID="7"
[2025-11-28 03:01:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:01:32] ANSI_COLOR="0;31"
[2025-11-28 03:01:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:01:32] HOME_URL="https://www.centos.org/"
[2025-11-28 03:01:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:01:32] 
[2025-11-28 03:01:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:01:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:01:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:01:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:01:32] 
[2025-11-28 03:01:32] 2025-11-28 02:00:58,829 | INFO     | ***************************************
[2025-11-28 03:01:32] 2025-11-28 02:00:59,333 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-28 03:01:32] 2025-11-28 02:00:59,549 | INFO     | sufficient remaining disk space (494841888768 B)
[2025-11-28 03:01:32] 2025-11-28 02:00:59,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:01:32] 2025-11-28 02:00:59,550 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:01:32] 2025-11-28 02:00:59,550 | INFO     | update_server=False
[2025-11-28 03:01:32] 2025-11-28 02:00:59,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:01:32] 2025-11-28 02:00:59,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:01:32] 2025-11-28 02:00:59,768 | INFO     | all data control threads have been joined
[2025-11-28 03:01:32] 2025-11-28 02:00:59,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:01:32] 2025-11-28 02:01:00,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:01:32] 2025-11-28 02:01:00,427 | INFO     | aborting loop
[2025-11-28 03:01:32] 2025-11-28 02:01:00,556 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:00,581 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:00,653 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:00,704 | INFO     | all job control threads have been joined
[2025-11-28 03:01:32] 2025-11-28 02:01:00,775 | INFO     | [data] control thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:00,833 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:00,998 | INFO     | all payload control threads have been joined
[2025-11-28 03:01:32] 2025-11-28 02:01:01,098 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,232 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:01:32] 2025-11-28 02:01:01,433 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,433 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,505 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,556 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,678 | INFO     | [job] validate thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:01,710 | INFO     | [job] control thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:02,004 | INFO     | [payload] control thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:02,313 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:02,707 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:01:32] 2025-11-28 02:01:03,976 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:01:32] 2025-11-28 02:01:05,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155072489280)>', '<ExcThread(monitor, started 140154631083776)>']
[2025-11-28 03:01:32] 2025-11-28 02:01:10,339 | INFO     | all workflow threads have been joined
[2025-11-28 03:01:32] 2025-11-28 02:01:10,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:01:32] 2025-11-28 02:01:10,340 | INFO     | traces error code: 0
[2025-11-28 03:01:32] 2025-11-28 02:01:10,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:01:32] 2025-11-28 02:01:28,261 | INFO     | PID=6632 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 03:01:32] 2025-11-28 02:01:28,262 | INFO     | .. there are 9 such processes running
[2025-11-28 03:01:32] 2025-11-28 02:01:28,263 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:01:32] 2025-11-28 02:01:28,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:01:32] 2025-11-28 02:01:28,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:01:32] 2025-11-28 02:01:28,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:01:32] 2025-11-28 02:01:28,263 | INFO     | [monitor] control thread has ended
[2025-11-28 03:01:32] 2025-11-28 02:01:28,502 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:01:32] 2025-11-28 02:01:28,588 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:01:32] 2025-11-28 02:01:28,623 [wrapper] pilotpid: 6632
[2025-11-28 03:01:32] 2025-11-28 02:01:28,656 [wrapper] Pilot exit status: 0
[2025-11-28 03:01:32] 2025-11-28 02:01:28,969 [wrapper] pandaids: 6895355249
[2025-11-28 03:01:32] 2025-11-28 02:01:29,686 [wrapper] cleanup supervisor_pilot 18014 6633
[2025-11-28 03:01:32] 2025-11-28 02:01:29,784 [wrapper] Test setup, not cleaning
[2025-11-28 03:01:32] 2025-11-28 02:01:29,878 [wrapper] apfmon messages muted
[2025-11-28 03:01:32] 2025-11-28 02:01:29,925 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:01:32] 2025-11-28 02:01:29,975 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:01:32]  *** Error codes and diagnostics ***
[2025-11-28 03:01:32]     "exeErrorCode": 0,
[2025-11-28 03:01:32]     "exeErrorDiag": "",
[2025-11-28 03:01:32]     "pilotErrorCode": 0,
[2025-11-28 03:01:32]     "pilotErrorDiag": "",
[2025-11-28 03:01:32]  *** Listing of results directory ***
[2025-11-28 03:01:32] total 1324140
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc    576529 Nov 23 07:48 pilot3.tar.gz
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc      5112 Nov 23 08:06 queuedata.json
[2025-11-28 03:01:32] -rwx------. 1 boinc boinc     36292 Nov 23 08:06 runpilot2-wrapper.sh
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc       100 Nov 27 03:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:01:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 03:40 run_atlas
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc       105 Nov 27 03:40 job.xml
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc      6392 Nov 27 03:40 init_data.xml
[2025-11-28 03:01:32] -rw-r--r--. 2 boinc boinc 408672717 Nov 27 03:40 EVNT.47483658._001145.pool.root.1
[2025-11-28 03:01:32] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:40 start_atlas.sh
[2025-11-28 03:01:32] drwxrwx--x. 2 boinc boinc        68 Nov 27 03:40 shared
[2025-11-28 03:01:32] -rw-r--r--. 2 boinc boinc    590108 Nov 27 03:40 input.tar.gz
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc         0 Nov 27 03:40 boinc_lockfile
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc      2785 Nov 27 03:40 pandaJob.out
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc    991554 Nov 27 03:44 agis_schedconf.cvmfs.json
[2025-11-28 03:01:32] drwx------. 5 boinc boinc      4096 Nov 27 03:44 pilot3
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc       533 Nov 28 02:37 boinc_task_state.xml
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc 916067151 Nov 28 02:57 HITS.47556149._001316.pool.root.1
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc      1029 Nov 28 02:59 memory_monitor_summary.json
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc   1516240 Nov 28 02:59 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc   2452405 Nov 28 02:59 log.47556149._001316.job.log.tgz.1
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc      7957 Nov 28 03:00 heartbeat.json
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc      8192 Nov 28 03:01 boinc_mmap_file
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc        29 Nov 28 03:01 wrapper_checkpoint.txt
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc       819 Nov 28 03:01 pilotlog.txt
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc        95 Nov 28 03:01 pilot_heartbeat.json
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc  11186219 Nov 28 03:01 log.47556149._001316.job.log.1
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc       353 Nov 28 03:01 output.list
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc       620 Nov 28 03:01 runtime_log
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc  13660160 Nov 28 03:01 result.tar.gz
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc      8833 Nov 28 03:01 runtime_log.err
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc       662 Nov 28 03:01 lXDODmQMJh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7SIKDmroGmPm.diag
[2025-11-28 03:01:32] -rw-r--r--. 1 boinc boinc     21501 Nov 28 03:01 stderr.txt
[2025-11-28 03:01:32] HITS file was successfully produced:
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc 916067151 Nov 28 02:57 shared/HITS.pool.root.1
[2025-11-28 03:01:32]  *** Contents of shared directory: ***
[2025-11-28 03:01:32] total 1307632
[2025-11-28 03:01:32] -rw-r--r--. 2 boinc boinc 408672717 Nov 27 03:40 ATLAS.root_0
[2025-11-28 03:01:32] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:40 start_atlas.sh
[2025-11-28 03:01:32] -rw-r--r--. 2 boinc boinc    590108 Nov 27 03:40 input.tar.gz
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc 916067151 Nov 28 02:57 HITS.pool.root.1
[2025-11-28 03:01:32] -rw-------. 1 boinc boinc  13660160 Nov 28 03:01 result.tar.gz
03:01:33 (2826): run_atlas exited; CPU time 315155.764596
03:01:33 (2826): called boinc_finish(0)

</stderr_txt>
]]>

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