Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:47:24 (18164): wrapper (7.7.26015): starting
01:47:24 (18164): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:47:24] Arguments: --nthreads 8
[2025-11-27 01:47:24] Threads: 8
[2025-11-27 01:47:24] Checking for CVMFS
[2025-11-27 01:47:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:47:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:47:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:47:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:47:27] 2.11.2.0 25230 285956 139856 153341 0 85 17325949 25165825 1288 130560 12 124098328 99.847 89299223 2919 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:47:27] CVMFS is ok
[2025-11-27 01:47:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:47:27] Checking for apptainer binary...
[2025-11-27 01:47:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:47:27] Running /usr/bin/apptainer --version
[2025-11-27 01:47:27] apptainer version 1.3.2-1.el7
[2025-11-27 01:47:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:47:52] cg-vwn359.simple-grid.lan
[2025-11-27 01:47:52] apptainer works
[2025-11-27 01:47:52] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:47:52] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:47:52] Starting ATLAS job with PandaID=6895355535
[2025-11-27 01:47:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:47:15]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:47:15] 2025-11-27 23:45:54,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:47:15] 2025-11-27 23:45:55,125 | INFO     | time since job start (82453s) is within the limit (172800.0s)
[2025-11-28 00:47:15] 2025-11-27 23:45:57,013 | INFO     | monitor loop #5552: job 0:6895355535 is in state 'finished'
[2025-11-28 00:47:15] 2025-11-27 23:45:57,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:47:15] 2025-11-27 23:45:57,133 | INFO     | time since job start (82455s) is within the limit (172800.0s)
[2025-11-28 00:47:15] 2025-11-27 23:45:59,141 | INFO     | time since job start (82457s) is within the limit (172800.0s)
[2025-11-28 00:47:15] 2025-11-27 23:45:59,524 | INFO     | monitor loop #5553: job 0:6895355535 is in state 'finished'
[2025-11-28 00:47:15] 2025-11-27 23:45:59,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:47:15] 2025-11-27 23:46:00,295 | INFO     | PID=21935 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:47:15] 2025-11-27 23:46:00,295 | INFO     | .. there are 9 such processes running
[2025-11-28 00:47:15] 2025-11-27 23:46:01,296 | INFO     | time since job start (82459s) is within the limit (172800.0s)
[2025-11-28 00:47:15] 2025-11-27 23:46:02,033 | INFO     | monitor loop #5554: job 0:6895355535 is in state 'finished'
[2025-11-28 00:47:15] 2025-11-27 23:46:02,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,166 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:47:15] 2025-11-27 23:46:03,167 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:47:15] 2025-11-27 23:46:03,168 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6895355535/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,169 | INFO     | extracted standard info from prmon json
[2025-11-28 00:47:15] 2025-11-27 23:46:03,169 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:47:15] 2025-11-27 23:46:03,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:47:15] 2025-11-27 23:46:03,198 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:47:15] 2025-11-27 23:46:03,200 | INFO     | sum of square deviations: 749437433057.853
[2025-11-28 00:47:15] 2025-11-27 23:46:03,280 | INFO     | sum of deviations: 2693948058303.714
[2025-11-28 00:47:15] 2025-11-27 23:46:03,281 | INFO     | mean x: 1764246113.5931447
[2025-11-28 00:47:15] 2025-11-27 23:46:03,281 | INFO     | mean y: 2836694.5782414307
[2025-11-28 00:47:15] 2025-11-27 23:46:03,281 | INFO     | intersect: -6338970082.662405
[2025-11-28 00:47:15] 2025-11-27 23:46:03,288 | INFO     | chi2: 20.79023740877401
[2025-11-28 00:47:15] 2025-11-27 23:46:03,290 | INFO     | sum of square deviations: 741092319359.36
[2025-11-28 00:47:15] 2025-11-27 23:46:03,327 | INFO     | time since job start (82461s) is within the limit (172800.0s)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,361 | INFO     | sum of deviations: 3142434878641.5317
[2025-11-28 00:47:15] 2025-11-27 23:46:03,362 | INFO     | mean x: 1764245961.0972326
[2025-11-28 00:47:15] 2025-11-27 23:46:03,362 | INFO     | mean y: 2844889.603590127
[2025-11-28 00:47:15] 2025-11-27 23:46:03,362 | INFO     | intersect: -7478042305.99837
[2025-11-28 00:47:15] 2025-11-27 23:46:03,364 | INFO     | chi2: 17.496382914261837
[2025-11-28 00:47:15] 2025-11-27 23:46:03,364 | INFO     | current chi2=17.496382914261837 (change=15.84327504178516 %)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,364 | INFO     | right removable region: 1336
[2025-11-28 00:47:15] 2025-11-27 23:46:03,370 | INFO     | sum of square deviations: 741091424489.3596
[2025-11-28 00:47:15] 2025-11-27 23:46:03,429 | INFO     | sum of deviations: 2143469102053.4836
[2025-11-28 00:47:15] 2025-11-27 23:46:03,429 | INFO     | mean x: 1764246266.0972326
[2025-11-28 00:47:15] 2025-11-27 23:46:03,430 | INFO     | mean y: 2846752.3193717278
[2025-11-28 00:47:15] 2025-11-27 23:46:03,430 | INFO     | intersect: -5099907421.901871
[2025-11-28 00:47:15] 2025-11-27 23:46:03,431 | INFO     | chi2: 16.322038295583965
[2025-11-28 00:47:15] 2025-11-27 23:46:03,432 | INFO     | current chi2=16.322038295583965 (change=21.491813803455422 %)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,432 | INFO     | left removable region: 10
[2025-11-28 00:47:15] 2025-11-27 23:46:03,433 | INFO     | sum of square deviations: 722949851022.5066
[2025-11-28 00:47:15] 2025-11-27 23:46:03,491 | INFO     | sum of deviations: 2245026693582.2734
[2025-11-28 00:47:15] 2025-11-27 23:46:03,491 | INFO     | mean x: 1764246235.606335
[2025-11-28 00:47:15] 2025-11-27 23:46:03,491 | INFO     | mean y: 2865559.253393665
[2025-11-28 00:47:15] 2025-11-27 23:46:03,491 | INFO     | intersect: -5475771565.280652
[2025-11-28 00:47:15] 2025-11-27 23:46:03,493 | INFO     | chi2: 9.034162814742043
[2025-11-28 00:47:15] 2025-11-27 23:46:03,493 | INFO     | current memory leak: 3.11 B/s (using 1326 data points, chi2=9.03)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,494 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | ..............................
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . Timing measurements:
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . get job = 0 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . initial setup = 7 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . payload setup = 143 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . stage-in = 0 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . payload execution = 82006 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . stage-out = 5 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | . log creation = 1 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,495 | INFO     | ..............................
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | 
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | job summary report
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | --------------------------------------------------
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | PanDA job id: 6895355535
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | task id: 47556137
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | errors: (none)
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:47:15] 2025-11-27 23:46:03,607 | INFO     | pilot state: finished 
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | transexitcode: 0
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | exeerrorcode: 0
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | exeerrordiag: 
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | exitcode: 0
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | exitmsg: OK
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | cpuconsumptiontime: 309543 s
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | nevents: 1000
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | neventsw: 0
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | pid: 28496
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | pgrp: 28496
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | corecount: 8
[2025-11-28 00:47:15] 2025-11-27 23:46:03,608 | INFO     | event service: False
[2025-11-28 00:47:15] 2025-11-27 23:46:03,609 | INFO     | sizes: {0: 2283487, 1: 2284173, 2: 2284344, 12: 2284372, 23: 2284400, 34: 2284428, 45: 2284584, 55: 2284612, 66: 2284640, 77: 2284668, 87: 2284724, 98: 2285032, 10
[2025-11-28 00:47:15] 2025-11-27 23:46:03,609 | INFO     | --------------------------------------------------
[2025-11-28 00:47:15] 2025-11-27 23:46:03,609 | INFO     | 
[2025-11-28 00:47:15] 2025-11-27 23:46:03,609 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-28 00:47:15] 2025-11-27 23:46:04,175 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,177 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:47:15] 2025-11-27 23:46:04,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:47:15] 2025-11-27 23:46:04,177 | INFO     | job 6895355535 has completed (purged errors)
[2025-11-28 00:47:15] 2025-11-27 23:46:04,177 | INFO     | overall cleanup function is called
[2025-11-28 00:47:15] 2025-11-27 23:46:05,194 | INFO     | --- collectZombieJob: --- 10, [28496]
[2025-11-28 00:47:15] 2025-11-27 23:46:05,194 | INFO     | zombie collector waiting for pid 28496
[2025-11-28 00:47:15] 2025-11-27 23:46:05,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:47:15] 2025-11-27 23:46:05,195 | INFO     | collected zombie processes
[2025-11-28 00:47:15] 2025-11-27 23:46:05,195 | INFO     | will attempt to kill all subprocesses of pid=28496
[2025-11-28 00:47:15] 2025-11-27 23:46:05,317 | INFO     | process IDs to be killed: [28496] (in reverse order)
[2025-11-28 00:47:15] 2025-11-27 23:46:05,938 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:47:15] 2025-11-27 23:46:05,938 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:47:15] 2025-11-27 23:46:05,941 | INFO     | did not find any defunct processes belonging to 28496
[2025-11-28 00:47:15] 2025-11-27 23:46:05,944 | INFO     | did not find any defunct processes belonging to 28496
[2025-11-28 00:47:15] 2025-11-27 23:46:06,010 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:47:15] 2025-11-27 23:46:06,011 | INFO     | ready for new job
[2025-11-28 00:47:15] 2025-11-27 23:46:06,011 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:47:15] 2025-11-27 23:46:06,016 | INFO     | ***************************************
[2025-11-28 00:47:15] 2025-11-27 23:46:06,016 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:47:15] 2025-11-27 23:46:06,016 | INFO     | ***************************************
[2025-11-28 00:47:15] 2025-11-27 23:46:06,016 | INFO     | 
[2025-11-28 00:47:15] 2025-11-27 23:46:06,017 | INFO     | pilot is running in a VM
[2025-11-28 00:47:15] 2025-11-27 23:46:06,017 | INFO     | architecture information:
[2025-11-28 00:47:15] 2025-11-27 23:46:06,024 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:47:15] 2025-11-27 23:46:06,295 | INFO     | cat /etc/os-release:
[2025-11-28 00:47:15] NAME="CentOS Linux"
[2025-11-28 00:47:15] VERSION="7 (Core)"
[2025-11-28 00:47:15] ID="centos"
[2025-11-28 00:47:15] ID_LIKE="rhel fedora"
[2025-11-28 00:47:15] VERSION_ID="7"
[2025-11-28 00:47:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:47:15] ANSI_COLOR="0;31"
[2025-11-28 00:47:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:47:15] HOME_URL="https://www.centos.org/"
[2025-11-28 00:47:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:47:15] 
[2025-11-28 00:47:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:47:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:47:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:47:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:47:15] 
[2025-11-28 00:47:15] 2025-11-27 23:46:06,295 | INFO     | ***************************************
[2025-11-28 00:47:15] 2025-11-27 23:46:06,798 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-28 00:47:15] 2025-11-27 23:46:07,001 | INFO     | sufficient remaining disk space (495329476608 B)
[2025-11-28 00:47:15] 2025-11-27 23:46:07,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:47:15] 2025-11-27 23:46:07,002 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:47:15] 2025-11-27 23:46:07,002 | INFO     | update_server=False
[2025-11-28 00:47:15] 2025-11-27 23:46:07,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:47:15] 2025-11-27 23:46:07,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:47:15] 2025-11-27 23:46:07,048 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 00:47:15] 2025-11-27 23:46:07,048 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 00:47:15] 2025-11-27 23:46:07,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:47:15] 2025-11-27 23:46:07,049 | INFO     | will abort loop
[2025-11-28 00:47:15] 2025-11-27 23:46:07,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:47:15] 2025-11-27 23:46:07,973 | INFO     | all data control threads have been joined
[2025-11-28 00:47:15] 2025-11-27 23:46:08,007 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:08,053 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:08,123 | INFO     | all job control threads have been joined
[2025-11-28 00:47:15] 2025-11-27 23:46:08,246 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:08,283 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:08,386 | INFO     | all payload control threads have been joined
[2025-11-28 00:47:15] 2025-11-27 23:46:08,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:47:15] 2025-11-27 23:46:08,846 | INFO     | [job] validate thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:08,923 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:08,979 | INFO     | [data] control thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,011 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,068 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,129 | INFO     | [job] control thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,223 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,392 | INFO     | [payload] control thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,428 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,618 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:09,628 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:11,012 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:47:15] 2025-11-27 23:46:36,487 | INFO     | PID=21935 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:47:15] 2025-11-27 23:46:36,487 | INFO     | .. there are 9 such processes running
[2025-11-28 00:47:15] 2025-11-27 23:46:36,489 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:47:15] 2025-11-27 23:46:36,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:47:15] 2025-11-27 23:46:36,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:47:15] 2025-11-27 23:47:06,183 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:47:15] 2025-11-27 23:47:07,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379899815744)>', '<ExcThread(monitor, started 140379319953152)>']
[2025-11-28 00:47:15] 2025-11-27 23:47:07,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:47:15] 2025-11-27 23:47:07,673 | INFO     | [monitor] control thread has ended
[2025-11-28 00:47:15] 2025-11-27 23:47:12,043 | INFO     | all workflow threads have been joined
[2025-11-28 00:47:15] 2025-11-27 23:47:12,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:47:15] 2025-11-27 23:47:12,044 | INFO     | traces error code: 0
[2025-11-28 00:47:15] 2025-11-27 23:47:12,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:47:15] 2025-11-27 23:47:12,400 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:47:15] 2025-11-27 23:47:12,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:47:15] 2025-11-27 23:47:12,593 [wrapper] pilotpid: 21935
[2025-11-28 00:47:15] 2025-11-27 23:47:12,688 [wrapper] Pilot exit status: 0
[2025-11-28 00:47:15] 2025-11-27 23:47:13,015 [wrapper] pandaids: 6895355535
[2025-11-28 00:47:15] 2025-11-27 23:47:13,938 [wrapper] cleanup supervisor_pilot 28365 21936
[2025-11-28 00:47:15] 2025-11-27 23:47:14,003 [wrapper] Test setup, not cleaning
[2025-11-28 00:47:15] 2025-11-27 23:47:14,050 [wrapper] apfmon messages muted
[2025-11-28 00:47:15] 2025-11-27 23:47:14,124 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:47:15] 2025-11-27 23:47:14,166 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:47:15]  *** Error codes and diagnostics ***
[2025-11-28 00:47:15]     "exeErrorCode": 0,
[2025-11-28 00:47:15]     "exeErrorDiag": "",
[2025-11-28 00:47:15]     "pilotErrorCode": 0,
[2025-11-28 00:47:15]     "pilotErrorDiag": "",
[2025-11-28 00:47:15]  *** Listing of results directory ***
[2025-11-28 00:47:15] total 1317480
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc    576529 Nov 23 08:37 pilot3.tar.gz
[2025-11-28 00:47:15] -rwx------. 1 boinc boinc     36292 Nov 23 08:44 runpilot2-wrapper.sh
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc      5112 Nov 23 08:44 queuedata.json
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:47:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:47 run_atlas
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:47 job.xml
[2025-11-28 00:47:15] -rw-r--r--. 2 boinc boinc 411170909 Nov 27 01:47 EVNT.47483658._000663.pool.root.1
[2025-11-28 00:47:15] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:47 start_atlas.sh
[2025-11-28 00:47:15] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:47 shared
[2025-11-28 00:47:15] -rw-r--r--. 2 boinc boinc    590094 Nov 27 01:47 input.tar.gz
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc      6394 Nov 27 01:47 init_data.xml
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:47 boinc_lockfile
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc      2786 Nov 27 01:47 pandaJob.out
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc    991546 Nov 27 01:51 agis_schedconf.cvmfs.json
[2025-11-28 00:47:15] drwx------. 5 boinc boinc      4096 Nov 27 01:51 pilot3
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:20 boinc_task_state.xml
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc 907133219 Nov 28 00:43 HITS.47556137._006587.pool.root.1
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc      1027 Nov 28 00:44 memory_monitor_summary.json
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc   1516240 Nov 28 00:44 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc   2431777 Nov 28 00:44 log.47556137._006587.job.log.tgz.1
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc      8628 Nov 28 00:46 heartbeat.json
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc        95 Nov 28 00:46 pilot_heartbeat.json
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:46 boinc_mmap_file
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:47 wrapper_checkpoint.txt
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc      5071 Nov 28 00:47 pilotlog.txt
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc  11013030 Nov 28 00:47 log.47556137._006587.job.log.1
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc       353 Nov 28 00:47 output.list
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:47 runtime_log
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc  13465600 Nov 28 00:47 result.tar.gz
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc      8833 Nov 28 00:47 runtime_log.err
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc       662 Nov 28 00:47 iZAODm5wJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgjKKDmbQzc9m.diag
[2025-11-28 00:47:15] -rw-r--r--. 1 boinc boinc     21494 Nov 28 00:47 stderr.txt
[2025-11-28 00:47:15] HITS file was successfully produced:
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc 907133219 Nov 28 00:43 shared/HITS.pool.root.1
[2025-11-28 00:47:15]  *** Contents of shared directory: ***
[2025-11-28 00:47:15] total 1301160
[2025-11-28 00:47:15] -rw-r--r--. 2 boinc boinc 411170909 Nov 27 01:47 ATLAS.root_0
[2025-11-28 00:47:15] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:47 start_atlas.sh
[2025-11-28 00:47:15] -rw-r--r--. 2 boinc boinc    590094 Nov 27 01:47 input.tar.gz
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc 907133219 Nov 28 00:43 HITS.pool.root.1
[2025-11-28 00:47:15] -rw-------. 1 boinc boinc  13465600 Nov 28 00:47 result.tar.gz
00:47:17 (18164): run_atlas exited; CPU time 310084.642300
00:47:17 (18164): called boinc_finish(0)

</stderr_txt>
]]>

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