Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:58:33 (1737170): wrapper (7.7.26015): starting
02:58:33 (1737170): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 02:58:33] Arguments: --nthreads 3
[2025-11-27 02:58:33] Threads: 3
[2025-11-27 02:58:33] Checking for CVMFS
[2025-11-27 02:58:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:58:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:58:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:58:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:58:33] 2.9.2.0 52203 12651 101424 153342 2 81 28133376 36864000 0 130560 0 4698756 99.941 612186 3603 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 02:58:33] CVMFS is ok
[2025-11-27 02:58:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:58:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:58:33] Further information can be found at the LHC@home message board.
[2025-11-27 02:58:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:58:33] Checking for apptainer binary...
[2025-11-27 02:58:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:58:33] Running /usr/bin/apptainer --version
[2025-11-27 02:58:33] apptainer version 1.4.1-1.1
[2025-11-27 02:58:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:58:33] thA371b
[2025-11-27 02:58:33] apptainer works
[2025-11-27 02:58:33] Set ATHENA_PROC_NUMBER=3
[2025-11-27 02:58:33] Set ATHENA_CORE_NUMBER=3
[2025-11-27 02:58:33] Starting ATLAS job with PandaID=6895365709
[2025-11-27 02:58:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:59:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:59:42] 2025-11-27 09:59:11,333 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:59:42] 2025-11-27 09:59:11,333 | INFO     | update_server=False
[2025-11-27 10:59:42] 2025-11-27 09:59:11,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:59:42] 2025-11-27 09:59:11,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:59:42] 2025-11-27 09:59:11,416 | INFO     | all payload control threads have been joined
[2025-11-27 10:59:42] 2025-11-27 09:59:11,689 | INFO     | all job control threads have been joined
[2025-11-27 10:59:42] 2025-11-27 09:59:11,745 | INFO     | all data control threads have been joined
[2025-11-27 10:59:42] 2025-11-27 09:59:12,233 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:59:42] 2025-11-27 09:59:12,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:59:42] 2025-11-27 09:59:12,292 | INFO     | aborting loop
[2025-11-27 10:59:42] 2025-11-27 09:59:12,337 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,338 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,410 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,422 | INFO     | [payload] control thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:59:42] 2025-11-27 09:59:12,471 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,694 | INFO     | [job] control thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,732 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,751 | INFO     | [data] control thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,929 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,974 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:12,987 | INFO     | [job] validate thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:13,178 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:13,298 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:13,377 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:14,435 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:14,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:59:42] 2025-11-27 09:59:18,607 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:59:42] 2025-11-27 09:59:18,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633586415424)>', '<ExcThread(monitor, started 139633237141248)>']
[2025-11-27 10:59:42] 2025-11-27 09:59:23,673 | INFO     | all workflow threads have been joined
[2025-11-27 10:59:42] 2025-11-27 09:59:23,673 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:59:42] 2025-11-27 09:59:23,674 | INFO     | traces error code: 0
[2025-11-27 10:59:42] 2025-11-27 09:59:23,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:59:42] 2025-11-27 09:59:42,426 | INFO     | PID=1740890 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:59:42] 2025-11-27 09:59:42,426 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:59:42] 2025-11-27 09:59:42,426 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:59:42] 2025-11-27 09:59:42,426 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:59:42] 2025-11-27 09:59:42,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:59:42] 2025-11-27 09:59:42,426 | INFO     | [monitor] control thread has ended
[2025-11-27 10:59:42] 2025-11-27 09:59:42,473 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:59:42] 2025-11-27 09:59:42,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:59:42] 2025-11-27 09:59:42,478 [wrapper] pilotpid: 1740890
[2025-11-27 10:59:42] 2025-11-27 09:59:42,480 [wrapper] Pilot exit status: 0
[2025-11-27 10:59:42] 2025-11-27 09:59:42,487 [wrapper] pandaids: 6895365709
[2025-11-27 10:59:42] 2025-11-27 09:59:42,503 [wrapper] cleanup supervisor_pilot 1797492 1740891
[2025-11-27 10:59:42] 2025-11-27 09:59:42,505 [wrapper] Test setup, not cleaning
[2025-11-27 10:59:42] 2025-11-27 09:59:42,507 [wrapper] apfmon messages muted
[2025-11-27 10:59:42] 2025-11-27 09:59:42,510 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:59:42] 2025-11-27 09:59:42,512 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:59:42]  *** Error codes and diagnostics ***
[2025-11-27 10:59:42]     "exeErrorCode": 0,
[2025-11-27 10:59:42]     "exeErrorDiag": "",
[2025-11-27 10:59:42]     "pilotErrorCode": 0,
[2025-11-27 10:59:42]     "pilotErrorDiag": "",
[2025-11-27 10:59:42]  *** Listing of results directory ***
[2025-11-27 10:59:42] total 1310340
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-27 10:59:42] -rwx------ 1 boinc boinc     36292 Nov 23 18:39 runpilot2-wrapper.sh
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc      5112 Nov 23 18:39 queuedata.json
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc       100 Nov 27 02:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:59:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 02:58 run_atlas
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc       105 Nov 27 02:58 job.xml
[2025-11-27 10:59:42] -rw-r--r-- 2 boinc boinc 408565950 Nov 27 02:58 EVNT.47483658._001180.pool.root.1
[2025-11-27 10:59:42] -rw-r--r-- 2 boinc boinc    590103 Nov 27 02:58 input.tar.gz
[2025-11-27 10:59:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:58 start_atlas.sh
[2025-11-27 10:59:42] drwxrwx--x 2 boinc boinc      4096 Nov 27 02:58 shared
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:58 boinc_setup_complete
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc      6441 Nov 27 02:58 init_data.xml
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:58 boinc_lockfile
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc      2782 Nov 27 02:58 pandaJob.out
[2025-11-27 10:59:42] -rw------- 1 boinc boinc    991530 Nov 27 02:58 agis_schedconf.cvmfs.json
[2025-11-27 10:59:42] drwx------ 5 boinc boinc      4096 Nov 27 02:58 pilot3
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc       532 Nov 27 10:55 boinc_task_state.xml
[2025-11-27 10:59:42] -rw------- 1 boinc boinc 918877750 Nov 27 10:58 HITS.47556149._001661.pool.root.1
[2025-11-27 10:59:42] -rw------- 1 boinc boinc      1025 Nov 27 10:58 memory_monitor_summary.json
[2025-11-27 10:59:42] -rw------- 1 boinc boinc        95 Nov 27 10:59 pilot_heartbeat.json
[2025-11-27 10:59:42] -rw------- 1 boinc boinc   1516240 Nov 27 10:59 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:59:42] -rw------- 1 boinc boinc   1166778 Nov 27 10:59 log.47556149._001661.job.log.tgz.1
[2025-11-27 10:59:42] -rw------- 1 boinc boinc      8566 Nov 27 10:59 heartbeat.json
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc      8192 Nov 27 10:59 boinc_mmap_file
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc        28 Nov 27 10:59 wrapper_checkpoint.txt
[2025-11-27 10:59:42] -rw------- 1 boinc boinc       747 Nov 27 10:59 pilotlog.txt
[2025-11-27 10:59:42] -rw------- 1 boinc boinc   4058729 Nov 27 10:59 log.47556149._001661.job.log.1
[2025-11-27 10:59:42] -rw------- 1 boinc boinc       353 Nov 27 10:59 output.list
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc       620 Nov 27 10:59 runtime_log
[2025-11-27 10:59:42] -rw------- 1 boinc boinc   5242880 Nov 27 10:59 result.tar.gz
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc      8903 Nov 27 10:59 runtime_log.err
[2025-11-27 10:59:42] -rw------- 1 boinc boinc       666 Nov 27 10:59 nHsMDmYETh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPfIKDmAJ37cn.diag
[2025-11-27 10:59:42] -rw-r--r-- 1 boinc boinc      7519 Nov 27 10:59 stderr.txt
[2025-11-27 10:59:42] HITS file was successfully produced:
[2025-11-27 10:59:42] -rw------- 1 boinc boinc 918877750 Nov 27 10:58 shared/HITS.pool.root.1
[2025-11-27 10:59:42]  *** Contents of shared directory: ***
[2025-11-27 10:59:42] total 1302060
[2025-11-27 10:59:42] -rw-r--r-- 2 boinc boinc 408565950 Nov 27 02:58 ATLAS.root_0
[2025-11-27 10:59:42] -rw-r--r-- 2 boinc boinc    590103 Nov 27 02:58 input.tar.gz
[2025-11-27 10:59:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:58 start_atlas.sh
[2025-11-27 10:59:42] -rw------- 1 boinc boinc 918877750 Nov 27 10:58 HITS.pool.root.1
[2025-11-27 10:59:42] -rw------- 1 boinc boinc   5242880 Nov 27 10:59 result.tar.gz
10:59:44 (1737170): run_atlas exited; CPU time 85078.927855
10:59:44 (1737170): called boinc_finish(0)

</stderr_txt>
]]>

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