Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:25 (410497): wrapper (7.7.26015): starting
00:01:25 (410497): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:01:25] Arguments: --nthreads 9
[2025-11-25 00:01:25] Threads: 9
[2025-11-25 00:01:25] Checking for CVMFS
[2025-11-25 00:01:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:28] 2.13.3.0 9735 28164 309800 153270 2 315 19015246 32935937 25539 16776704 0 127567276 99.758 80566380 32998 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:01:28] CVMFS is ok
[2025-11-25 00:01:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:28] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:28] Checking for apptainer binary...
[2025-11-25 00:01:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:28] Running /usr/bin/apptainer --version
[2025-11-25 00:01:28] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:29] c-8-15.aglt2.org
[2025-11-25 00:01:29] apptainer works
[2025-11-25 00:01:29] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:01:29] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:01:29] Starting ATLAS job with PandaID=6895365678
[2025-11-25 00:01:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:57:08]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:57:08] 2025-11-26 06:55:58,057 | INFO     | monitor loop #5398: job 0:6895365678 is in state 'finished'
[2025-11-26 01:57:08] 2025-11-26 06:55:58,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:57:08] 2025-11-26 06:55:58,556 | INFO     | time since job start (93199s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:00,568 | INFO     | monitor loop #5399: job 0:6895365678 is in state 'finished'
[2025-11-26 01:57:08] 2025-11-26 06:56:00,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:57:08] 2025-11-26 06:56:00,568 | INFO     | time since job start (93201s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:02,576 | INFO     | time since job start (93203s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:03,076 | INFO     | monitor loop #5400: job 0:6895365678 is in state 'finished'
[2025-11-26 01:57:08] 2025-11-26 06:56:03,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:57:08] 2025-11-26 06:56:04,584 | INFO     | time since job start (93205s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:05,616 | INFO     | monitor loop #5401: job 0:6895365678 is in state 'finished'
[2025-11-26 01:57:08] 2025-11-26 06:56:05,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:57:08] 2025-11-26 06:56:06,596 | INFO     | time since job start (93207s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:08,121 | INFO     | monitor loop #5402: job 0:6895365678 is in state 'finished'
[2025-11-26 01:57:08] 2025-11-26 06:56:08,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:57:08] 2025-11-26 06:56:08,628 | INFO     | time since job start (93209s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:08,862 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 01:57:08] 2025-11-26 06:56:08,884 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1830000000004
[2025-11-26 01:57:08] 2025-11-26 06:56:08,912 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895365678/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:57:08] 2025-11-26 06:56:08,913 | INFO     | extracted standard info from prmon json
[2025-11-26 01:57:08] 2025-11-26 06:56:08,913 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:57:08] 2025-11-26 06:56:08,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:57:08] 2025-11-26 06:56:09,002 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:57:08] 2025-11-26 06:56:09,009 | INFO     | sum of square deviations: 1099731923080.066
[2025-11-26 01:57:08] 2025-11-26 06:56:09,446 | INFO     | sum of deviations: 5061968403696.83
[2025-11-26 01:57:08] 2025-11-26 06:56:09,447 | INFO     | mean x: 1764093574.9278688
[2025-11-26 01:57:08] 2025-11-26 06:56:09,447 | INFO     | mean y: 3047020.834754098
[2025-11-26 01:57:08] 2025-11-26 06:56:09,447 | INFO     | intersect: -8116919081.849095
[2025-11-26 01:57:08] 2025-11-26 06:56:09,502 | INFO     | chi2: 18.09802612340462
[2025-11-26 01:57:08] 2025-11-26 06:56:09,574 | INFO     | sum of square deviations: 1088952115242.6724
[2025-11-26 01:57:08] 2025-11-26 06:56:09,845 | INFO     | sum of deviations: 5594795271519.86
[2025-11-26 01:57:08] 2025-11-26 06:56:09,849 | INFO     | mean x: 1764093422.4407895
[2025-11-26 01:57:08] 2025-11-26 06:56:09,849 | INFO     | mean y: 3054556.8539473685
[2025-11-26 01:57:08] 2025-11-26 06:56:09,849 | INFO     | intersect: -9060467521.149961
[2025-11-26 01:57:08] 2025-11-26 06:56:09,855 | INFO     | chi2: 14.944808197941127
[2025-11-26 01:57:08] 2025-11-26 06:56:09,856 | INFO     | current chi2=14.944808197941127 (change=17.422993557212887 %)
[2025-11-26 01:57:08] 2025-11-26 06:56:09,856 | INFO     | right removable region: 1519
[2025-11-26 01:57:08] 2025-11-26 06:56:09,858 | INFO     | sum of square deviations: 1088948461342.6718
[2025-11-26 01:57:08] 2025-11-26 06:56:09,982 | INFO     | sum of deviations: 4408615327438.564
[2025-11-26 01:57:08] 2025-11-26 06:56:09,982 | INFO     | mean x: 1764093727.4407895
[2025-11-26 01:57:08] 2025-11-26 06:56:09,983 | INFO     | mean y: 3056259.861842105
[2025-11-26 01:57:08] 2025-11-26 06:56:09,983 | INFO     | intersect: -7138889316.0053625
[2025-11-26 01:57:08] 2025-11-26 06:56:09,990 | INFO     | chi2: 13.897494464062742
[2025-11-26 01:57:08] 2025-11-26 06:56:09,990 | INFO     | current chi2=13.897494464062742 (change=23.209888364066902 %)
[2025-11-26 01:57:08] 2025-11-26 06:56:09,990 | INFO     | left removable region: 10
[2025-11-26 01:57:08] 2025-11-26 06:56:09,996 | INFO     | sum of square deviations: 1065477855347.5378
[2025-11-26 01:57:08] 2025-11-26 06:56:10,100 | INFO     | sum of deviations: 4567670198753.594
[2025-11-26 01:57:08] 2025-11-26 06:56:10,100 | INFO     | mean x: 1764093696.9688535
[2025-11-26 01:57:08] 2025-11-26 06:56:10,100 | INFO     | mean y: 3072096.438038436
[2025-11-26 01:57:08] 2025-11-26 06:56:10,100 | INFO     | intersect: -7559542337.088024
[2025-11-26 01:57:08] 2025-11-26 06:56:10,102 | INFO     | chi2: 8.040949043228
[2025-11-26 01:57:08] 2025-11-26 06:56:10,102 | INFO     | current memory leak: 4.29 B/s (using 1509 data points, chi2=8.04)
[2025-11-26 01:57:08] 2025-11-26 06:56:10,128 | INFO     | could have reported an average CPU frequency of 2600 MHz (54 samples)
[2025-11-26 01:57:08] 2025-11-26 06:56:10,128 | INFO     | ..............................
[2025-11-26 01:57:08] 2025-11-26 06:56:10,128 | INFO     | . Timing measurements:
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . get job = 0 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . initial setup = 5 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . payload setup = 38 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . stage-in = 0 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . payload execution = 93052 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . stage-out = 8 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | . log creation = 1 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,129 | INFO     | ..............................
[2025-11-26 01:57:08] 2025-11-26 06:56:10,563 | INFO     | 
[2025-11-26 01:57:08] 2025-11-26 06:56:10,563 | INFO     | job summary report
[2025-11-26 01:57:08] 2025-11-26 06:56:10,563 | INFO     | --------------------------------------------------
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | PanDA job id: 6895365678
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | task id: 47556149
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | errors: (none)
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | pilot state: finished 
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | transexitcode: 0
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | exeerrorcode: 0
[2025-11-26 01:57:08] 2025-11-26 06:56:10,564 | INFO     | exeerrordiag: 
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | exitcode: 0
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | exitmsg: OK
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | cpuconsumptiontime: 315059 s
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | nevents: 1000
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | neventsw: 0
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | pid: 434111
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | pgrp: 434111
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | corecount: 9
[2025-11-26 01:57:08] 2025-11-26 06:56:10,565 | INFO     | event service: False
[2025-11-26 01:57:08] 2025-11-26 06:56:10,566 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 23: 2284365, 29: 2284655, 34: 2284683, 93094: 2352279, 93095: 2352278, 93105: 2361333, 93107: 2361389, 93147: 2361635}
[2025-11-26 01:57:08] 2025-11-26 06:56:10,566 | INFO     | --------------------------------------------------
[2025-11-26 01:57:08] 2025-11-26 06:56:10,566 | INFO     | 
[2025-11-26 01:57:08] 2025-11-26 06:56:10,566 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 01:57:08] 2025-11-26 06:56:10,721 | INFO     | time since job start (93211s) is within the limit (172800.0s)
[2025-11-26 01:57:08] 2025-11-26 06:56:10,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:57:08] 2025-11-26 06:56:10,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:57:08] 2025-11-26 06:56:10,780 | INFO     | job 6895365678 has completed (purged errors)
[2025-11-26 01:57:08] 2025-11-26 06:56:10,780 | INFO     | overall cleanup function is called
[2025-11-26 01:57:08] 2025-11-26 06:56:11,831 | INFO     | --- collectZombieJob: --- 10, [434111]
[2025-11-26 01:57:08] 2025-11-26 06:56:11,831 | INFO     | zombie collector waiting for pid 434111
[2025-11-26 01:57:08] 2025-11-26 06:56:11,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:57:08] 2025-11-26 06:56:11,832 | INFO     | collected zombie processes
[2025-11-26 01:57:08] 2025-11-26 06:56:11,832 | INFO     | will attempt to kill all subprocesses of pid=434111
[2025-11-26 01:57:08] 2025-11-26 06:56:13,676 | INFO     | process IDs to be killed: [434111] (in reverse order)
[2025-11-26 01:57:08] 2025-11-26 06:56:14,070 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:57:08] 2025-11-26 06:56:14,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:57:08] 2025-11-26 06:56:14,087 | INFO     | did not find any defunct processes belonging to 434111
[2025-11-26 01:57:08] 2025-11-26 06:56:14,108 | INFO     | did not find any defunct processes belonging to 434111
[2025-11-26 01:57:08] 2025-11-26 06:56:14,129 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:57:08] 2025-11-26 06:56:14,129 | INFO     | ready for new job
[2025-11-26 01:57:08] 2025-11-26 06:56:14,130 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:57:08] 2025-11-26 06:56:14,137 | INFO     | ***************************************
[2025-11-26 01:57:08] 2025-11-26 06:56:14,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:57:08] 2025-11-26 06:56:14,141 | INFO     | ***************************************
[2025-11-26 01:57:08] 2025-11-26 06:56:14,141 | INFO     | 
[2025-11-26 01:57:08] 2025-11-26 06:56:14,143 | INFO     | architecture information:
[2025-11-26 01:57:08] 2025-11-26 06:56:14,148 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:57:08] 2025-11-26 06:56:14,319 | INFO     | cat /etc/os-release:
[2025-11-26 01:57:08] NAME="CentOS Linux"
[2025-11-26 01:57:08] VERSION="7 (Core)"
[2025-11-26 01:57:08] ID="centos"
[2025-11-26 01:57:08] ID_LIKE="rhel fedora"
[2025-11-26 01:57:08] VERSION_ID="7"
[2025-11-26 01:57:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:57:08] ANSI_COLOR="0;31"
[2025-11-26 01:57:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:57:08] HOME_URL="https://www.centos.org/"
[2025-11-26 01:57:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:57:08] 
[2025-11-26 01:57:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:57:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:57:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:57:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:57:08] 
[2025-11-26 01:57:08] 2025-11-26 06:56:14,320 | INFO     | ***************************************
[2025-11-26 01:57:08] 2025-11-26 06:56:14,831 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 01:57:08] 2025-11-26 06:56:14,942 | INFO     | sufficient remaining disk space (69014126592 B)
[2025-11-26 01:57:08] 2025-11-26 06:56:14,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:57:08] 2025-11-26 06:56:14,943 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:57:08] 2025-11-26 06:56:14,943 | INFO     | update_server=False
[2025-11-26 01:57:08] 2025-11-26 06:56:14,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:57:08] 2025-11-26 06:56:14,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:57:08] 2025-11-26 06:56:14,944 | INFO     | aborting loop
[2025-11-26 01:57:08] 2025-11-26 06:56:14,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:57:08] 2025-11-26 06:56:15,083 | INFO     | all job control threads have been joined
[2025-11-26 01:57:08] 2025-11-26 06:56:15,438 | INFO     | all data control threads have been joined
[2025-11-26 01:57:08] 2025-11-26 06:56:15,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:57:08] 2025-11-26 06:56:15,959 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,150 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,149 | INFO     | [job] control thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,177 | INFO     | all payload control threads have been joined
[2025-11-26 01:57:08] 2025-11-26 06:56:16,348 | INFO     | [job] validate thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,349 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,443 | INFO     | [data] control thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,645 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:57:08] 2025-11-26 06:56:16,833 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,879 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:16,961 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:17,163 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:17,183 | INFO     | [payload] control thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:17,191 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:17,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:17,550 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:20,807 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:57:08] 2025-11-26 06:56:31,043 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:57:08] 2025-11-26 06:56:31,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666975995712)>', '<ExcThread(monitor, started 139666481207040)>']
[2025-11-26 01:57:08] 2025-11-26 06:56:36,774 | INFO     | all workflow threads have been joined
[2025-11-26 01:57:08] 2025-11-26 06:56:36,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:57:08] 2025-11-26 06:56:36,774 | INFO     | traces error code: 0
[2025-11-26 01:57:08] 2025-11-26 06:56:36,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:57:08] 2025-11-26 06:56:47,303 | INFO     | PID=418030 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 01:57:08] 2025-11-26 06:56:47,303 | INFO     | .. there are 45 such processes running
[2025-11-26 01:57:08] 2025-11-26 06:56:47,303 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:57:08] 2025-11-26 06:56:47,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:57:08] 2025-11-26 06:56:47,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:57:08] 2025-11-26 06:56:47,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:57:08] 2025-11-26 06:56:47,304 | INFO     | [monitor] control thread has ended
[2025-11-26 01:57:08] 2025-11-26 06:56:47,525 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:57:08] 2025-11-26 06:56:47,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:57:08] 2025-11-26 06:56:47,592 [wrapper] pilotpid: 418030
[2025-11-26 01:57:08] 2025-11-26 06:56:47,619 [wrapper] Pilot exit status: 0
[2025-11-26 01:57:08] 2025-11-26 06:56:47,747 [wrapper] pandaids: 6895365678
[2025-11-26 01:57:08] 2025-11-26 06:56:48,131 [wrapper] cleanup supervisor_pilot 1520297 418031
[2025-11-26 01:57:08] 2025-11-26 06:56:48,147 [wrapper] Test setup, not cleaning
[2025-11-26 01:57:08] 2025-11-26 06:56:48,165 [wrapper] apfmon messages muted
[2025-11-26 01:57:08] 2025-11-26 06:56:48,198 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:57:08] 2025-11-26 06:56:48,236 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:57:08]  *** Error codes and diagnostics ***
[2025-11-26 01:57:08]     "exeErrorCode": 0,
[2025-11-26 01:57:08]     "exeErrorDiag": "",
[2025-11-26 01:57:08]     "pilotErrorCode": 0,
[2025-11-26 01:57:08]     "pilotErrorDiag": "",
[2025-11-26 01:57:08]  *** Listing of results directory ***
[2025-11-26 01:57:08] total 1338820
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 12:39 queuedata.json
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-26 01:57:08] -rwx------. 1 boincer umatlas     36292 Nov 23 12:40 runpilot2-wrapper.sh
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:57:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-26 01:57:08] -rw-r--r--. 2 boincer umatlas 409210697 Nov 25 00:01 EVNT.47483658._001179.pool.root.1
[2025-11-26 01:57:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 01:57:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-26 01:57:08] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:01 input.tar.gz
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:01 pandaJob.out
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-26 01:57:08] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas       532 Nov 26 01:22 boinc_task_state.xml
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas 929546029 Nov 26 01:53 HITS.47556149._001652.pool.root.1
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas      1070 Nov 26 01:55 memory_monitor_summary.json
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas   1516240 Nov 26 01:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas   2637674 Nov 26 01:55 log.47556149._001652.job.log.tgz.1
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas        95 Nov 26 01:56 pilot_heartbeat.json
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas      8648 Nov 26 01:56 heartbeat.json
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas       822 Nov 26 01:56 pilotlog.txt
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas  11501575 Nov 26 01:56 log.47556149._001652.job.log.1
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas       353 Nov 26 01:56 output.list
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas       620 Nov 26 01:56 runtime_log
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas  14161920 Nov 26 01:56 result.tar.gz
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 01:56 runtime_log.err
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas       662 Nov 26 01:56 fHlLDmvFTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG4KKDmKlIRan.diag
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas      6658 Nov 26 01:56 init_data.xml
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 01:57 boinc_mmap_file
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas        29 Nov 26 01:57 wrapper_checkpoint.txt
[2025-11-26 01:57:08] -rw-r--r--. 1 boincer umatlas     21799 Nov 26 01:57 stderr.txt
[2025-11-26 01:57:08] HITS file was successfully produced:
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas 929546029 Nov 26 01:53 shared/HITS.pool.root.1
[2025-11-26 01:57:08]  *** Contents of shared directory: ***
[2025-11-26 01:57:08] total 1321812
[2025-11-26 01:57:08] -rw-r--r--. 2 boincer umatlas 409210697 Nov 25 00:01 ATLAS.root_0
[2025-11-26 01:57:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 01:57:08] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:01 input.tar.gz
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas 929546029 Nov 26 01:53 HITS.pool.root.1
[2025-11-26 01:57:08] -rw-------. 1 boincer umatlas  14161920 Nov 26 01:56 result.tar.gz
01:57:10 (410497): run_atlas exited; CPU time 318478.591807
01:57:10 (410497): called boinc_finish(0)

</stderr_txt>
]]>

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