Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:57:09 (3585381): wrapper (7.7.26015): starting
05:57:09 (3585381): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 05:57:09] Arguments: --nthreads 12
[2025-11-24 05:57:09] Threads: 12
[2025-11-24 05:57:09] Checking for CVMFS
[2025-11-24 05:57:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:57:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:57:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:57:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:57:11] 2.11.5.0 831512 25481 305752 153247 3 131 43057711 45568001 12655 130560 0 121939188 99.742 93937899 22869 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 05:57:11] CVMFS is ok
[2025-11-24 05:57:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:57:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:57:11] Further information can be found at the LHC@home message board.
[2025-11-24 05:57:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:57:11] Checking for apptainer binary...
[2025-11-24 05:57:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:57:11] Running /usr/bin/apptainer --version
[2025-11-24 05:57:11] apptainer version 1.4.1-1.el9
[2025-11-24 05:57:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:57:13] wns0042.triumf.lcg
[2025-11-24 05:57:13] apptainer works
[2025-11-24 05:57:13] Set ATHENA_PROC_NUMBER=12
[2025-11-24 05:57:13] Set ATHENA_CORE_NUMBER=12
[2025-11-24 05:57:13] Starting ATLAS job with PandaID=6895381180
[2025-11-24 05:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:08:03]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:08:03] 2025-11-24 14:07:29,264 | WARNING  | wrong length of table data, x=[1763992871.0, 1763992932.0, 1763992993.0, 1763993054.0], y=[1761.0, 536616.0, 375538.0, 574035.0] (must be same and length>=4)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | could have reported an average CPU frequency of 1263 MHz (4 samples)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | ..............................
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . Timing measurements:
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . get job = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . initial setup = 8 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . payload setup = 48 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . stage-in = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . payload execution = 266 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | . stage-out = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | . log creation = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | ..............................
[2025-11-24 06:08:03] 2025-11-24 14:07:29,281 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 06:08:03] 2025-11-24 14:07:29,282 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895381180/pilotlog.txt
[2025-11-24 06:08:03] 2025-11-24 14:07:29,364 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 06:08:03] - Log from pilotlog.txt -
[2025-11-24 06:08:03] 2025-11-24 14:07:29,251 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895381180/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,258 | INFO     | extracted standard info from prmon json
[2025-11-24 06:08:03] 2025-11-24 14:07:29,259 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:08:03] 2025-11-24 14:07:29,259 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:08:03] 2025-11-24 14:07:29,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 06:08:03] 2025-11-24 14:07:29,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 06:08:03] 2025-11-24 14:07:29,264 | WARNING  | wrong length of table data, x=[1763992871.0, 1763992932.0, 1763992993.0, 1763993054.0], y=[1761.0, 536616.0, 375538.0, 574035.0] (must be same and length>=4)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | could have reported an average CPU frequency of 1263 MHz (4 samples)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | ..............................
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . Timing measurements:
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . get job = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . initial setup = 8 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . payload setup = 48 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . stage-in = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . payload execution = 266 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | . stage-out = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | . log creation = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | ..............................
[2025-11-24 06:08:03] 2025-11-24 14:07:29,281 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 06:08:03] 2025-11-24 14:07:29,282 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895381180/pilotlog.txt
[2025-11-24 06:08:03] 2025-11-24 14:07:29,365 | WARNING  | 
[2025-11-24 06:08:03] [begin log extracts]
[2025-11-24 06:08:03] - Log from pilotlog.txt -
[2025-11-24 06:08:03] 2025-11-24 14:07:29,251 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895381180/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,258 | INFO     | extracted standard info from prmon json
[2025-11-24 06:08:03] 2025-11-24 14:07:29,259 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:08:03] 2025-11-24 14:07:29,259 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:08:03] 2025-11-24 14:07:29,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 06:08:03] 2025-11-24 14:07:29,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 06:08:03] 2025-11-24 14:07:29,264 | WARNING  | wrong length of table data, x=[1763992871.0, 1763992932.0, 1763992993.0, 1763993054.0], y=[1761.0, 536616.0, 375538.0, 574035.0] (must be same and length>=4)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | could have reported an average CPU frequency of 1263 MHz (4 samples)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | ..............................
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . Timing measurements:
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . get job = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . initial setup = 8 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . payload setup = 48 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . stage-in = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,266 | INFO     | . payload execution = 266 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | . stage-out = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | . log creation = 0 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,267 | INFO     | ..............................
[2025-11-24 06:08:03] 2025-11-24 14:07:29,281 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 06:08:03] 2025-11-24 14:07:29,282 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895381180/pilotlog.txt
[2025-11-24 06:08:03] [end log extracts]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,366 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,367 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 06:08:03] 2025-11-24 14:07:29,483 | INFO     | 
[2025-11-24 06:08:03] 2025-11-24 14:07:29,483 | INFO     | job summary report
[2025-11-24 06:08:03] 2025-11-24 14:07:29,483 | INFO     | --------------------------------------------------
[2025-11-24 06:08:03] 2025-11-24 14:07:29,483 | INFO     | PanDA job id: 6895381180
[2025-11-24 06:08:03] 2025-11-24 14:07:29,483 | INFO     | task id: 47556137
[2025-11-24 06:08:03] 2025-11-24 14:07:29,483 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 06:05:01,955 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | pilot state: failed 
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | transexitcode: 65
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | exeerrorcode: 65
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | exitcode: 65
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | cpuconsumptiontime: 86 s
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | nevents: 0
[2025-11-24 06:08:03] 2025-11-24 14:07:29,484 | INFO     | neventsw: 0
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | pid: 3596079
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | pgrp: 3596079
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | corecount: 12
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | event service: False
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | sizes: {0: 2283481, 1: 2284163, 2: 2284334, 13: 2284362, 24: 2284418, 35: 2284446, 41: 2284864, 46: 2284892, 316: 2310397, 317: 2310401, 318: 2314747, 321: 2315083
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | --------------------------------------------------
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | 
[2025-11-24 06:08:03] 2025-11-24 14:07:29,485 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 06:08:03] 2025-11-24 14:07:29,511 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | job 6895381180 has completed (purged errors)
[2025-11-24 06:08:03] 2025-11-24 14:07:29,514 | INFO     | overall cleanup function is called
[2025-11-24 06:08:03] 2025-11-24 14:07:30,540 | INFO     | --- collectZombieJob: --- 10, [3596079]
[2025-11-24 06:08:03] 2025-11-24 14:07:30,540 | INFO     | zombie collector waiting for pid 3596079
[2025-11-24 06:08:03] 2025-11-24 14:07:30,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:08:03] 2025-11-24 14:07:30,541 | INFO     | collected zombie processes
[2025-11-24 06:08:03] 2025-11-24 14:07:30,541 | INFO     | will attempt to kill all subprocesses of pid=3596079
[2025-11-24 06:08:03] 2025-11-24 14:07:31,035 | INFO     | process IDs to be killed: [3596079] (in reverse order)
[2025-11-24 06:08:03] 2025-11-24 14:07:31,285 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:08:03] 2025-11-24 14:07:31,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:08:03] 2025-11-24 14:07:31,321 | INFO     | did not find any defunct processes belonging to 3596079
[2025-11-24 06:08:03] 2025-11-24 14:07:31,365 | INFO     | did not find any defunct processes belonging to 3596079
[2025-11-24 06:08:03] 2025-11-24 14:07:31,367 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:08:03] 2025-11-24 14:07:31,367 | INFO     | ready for new job
[2025-11-24 06:08:03] 2025-11-24 14:07:31,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:08:03] 2025-11-24 14:07:31,383 | INFO     | ***************************************
[2025-11-24 06:08:03] 2025-11-24 14:07:31,383 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:08:03] 2025-11-24 14:07:31,383 | INFO     | ***************************************
[2025-11-24 06:08:03] 2025-11-24 14:07:31,383 | INFO     | 
[2025-11-24 06:08:03] 2025-11-24 14:07:31,403 | INFO     | architecture information:
[2025-11-24 06:08:03] 2025-11-24 14:07:31,409 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:08:03] 2025-11-24 14:07:31,504 | INFO     | cat /etc/os-release:
[2025-11-24 06:08:03] NAME="CentOS Linux"
[2025-11-24 06:08:03] VERSION="7 (Core)"
[2025-11-24 06:08:03] ID="centos"
[2025-11-24 06:08:03] ID_LIKE="rhel fedora"
[2025-11-24 06:08:03] VERSION_ID="7"
[2025-11-24 06:08:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:08:03] ANSI_COLOR="0;31"
[2025-11-24 06:08:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:08:03] HOME_URL="https://www.centos.org/"
[2025-11-24 06:08:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:08:03] 
[2025-11-24 06:08:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:08:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:08:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:08:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:08:03] 
[2025-11-24 06:08:03] 2025-11-24 14:07:31,505 | INFO     | ***************************************
[2025-11-24 06:08:03] 2025-11-24 14:07:32,008 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 06:08:03] 2025-11-24 14:07:32,152 | INFO     | sufficient remaining disk space (1922609184768 B)
[2025-11-24 06:08:03] 2025-11-24 14:07:32,152 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:08:03] 2025-11-24 14:07:32,153 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:08:03] 2025-11-24 14:07:32,153 | INFO     | update_server=False
[2025-11-24 06:08:03] 2025-11-24 14:07:32,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:08:03] 2025-11-24 14:07:32,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:08:03] 2025-11-24 14:07:32,153 | INFO     | aborting loop
[2025-11-24 06:08:03] 2025-11-24 14:07:32,294 | INFO     | all data control threads have been joined
[2025-11-24 06:08:03] 2025-11-24 14:07:32,822 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:08:03] 2025-11-24 14:07:32,877 | INFO     | all payload control threads have been joined
[2025-11-24 06:08:03] 2025-11-24 14:07:33,159 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:33,166 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:33,218 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:33,300 | INFO     | [data] control thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:33,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:08:03] 2025-11-24 14:07:33,394 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:33,613 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:33,657 | INFO     | all job control threads have been joined
[2025-11-24 06:08:03] 2025-11-24 14:07:33,883 | INFO     | [payload] control thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:34,070 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:34,076 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:34,307 | INFO     | [job] validate thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:34,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:08:03] 2025-11-24 14:07:34,436 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:34,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:08:03] 2025-11-24 14:07:34,509 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:34,663 | INFO     | [job] control thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:35,381 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:35,511 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:38,323 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:08:03] 2025-11-24 14:07:39,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567978575680)>', '<ExcThread(monitor, started 140567650469632)>']
[2025-11-24 06:08:03] 2025-11-24 14:07:45,017 | INFO     | all workflow threads have been joined
[2025-11-24 06:08:03] 2025-11-24 14:07:45,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:08:03] 2025-11-24 14:07:45,018 | INFO     | traces error code: 0
[2025-11-24 06:08:03] 2025-11-24 14:07:45,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:08:03] 2025-11-24 14:08:02,350 | INFO     | PID=3589119 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:08:03] 2025-11-24 14:08:02,350 | INFO     | .. there are 14 such processes running
[2025-11-24 06:08:03] 2025-11-24 14:08:02,351 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:08:03] 2025-11-24 14:08:02,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:08:03] 2025-11-24 14:08:02,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:08:03] 2025-11-24 14:08:02,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:08:03] 2025-11-24 14:08:02,352 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 06:08:03] 2025-11-24 14:08:02,352 | INFO     | [monitor] control thread has ended
[2025-11-24 06:08:03] 2025-11-24 14:08:02,592 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:08:03] 2025-11-24 14:08:02,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:08:03] 2025-11-24 14:08:02,624 [wrapper] pilotpid: 3589119
[2025-11-24 06:08:03] 2025-11-24 14:08:02,628 [wrapper] Pilot exit status: 0
[2025-11-24 06:08:03] 2025-11-24 14:08:02,676 [wrapper] pandaids: 6895381180
[2025-11-24 06:08:03] 2025-11-24 14:08:02,745 [wrapper] cleanup supervisor_pilot 3589125 3589120
[2025-11-24 06:08:03] 2025-11-24 14:08:02,751 [wrapper] Test setup, not cleaning
[2025-11-24 06:08:03] 2025-11-24 14:08:02,754 [wrapper] apfmon messages muted
[2025-11-24 06:08:03] 2025-11-24 14:08:02,758 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:08:03] 2025-11-24 14:08:02,762 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:08:03]  *** Error codes and diagnostics ***
[2025-11-24 06:08:03]     "exeErrorCode": 65,
[2025-11-24 06:08:03]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 06:08:03]     "pilotErrorCode": 1305,
[2025-11-24 06:08:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 06:08:03]  *** Listing of results directory ***
[2025-11-24 06:08:03] total 404224
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:53 pilot3.tar.gz
[2025-11-24 06:08:03] -rwx------. 1 boinc boinc     36292 Nov 23 19:08 runpilot2-wrapper.sh
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc      5112 Nov 23 19:08 queuedata.json
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc       100 Nov 24 05:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:08:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 05:57 run_atlas
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc       105 Nov 24 05:57 job.xml
[2025-11-24 06:08:03] -rw-r--r--. 2 boinc boinc 409661005 Nov 24 05:57 EVNT.47483658._000992.pool.root.1
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc      6595 Nov 24 05:57 init_data.xml
[2025-11-24 06:08:03] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:57 start_atlas.sh
[2025-11-24 06:08:03] drwxrwx--x. 2 boinc boinc      4096 Nov 24 05:57 shared
[2025-11-24 06:08:03] -rw-r--r--. 2 boinc boinc    590098 Nov 24 05:57 input.tar.gz
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc         0 Nov 24 05:57 boinc_lockfile
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc      2785 Nov 24 05:57 pandaJob.out
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc    988280 Nov 24 05:58 agis_schedconf.cvmfs.json
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc   1516227 Nov 24 05:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:08:03] drwx------. 5 boinc boinc      4096 Nov 24 05:58 pilot3
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc       524 Nov 24 06:04 boinc_task_state.xml
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc      1005 Nov 24 06:05 memory_monitor_summary.json
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc     52968 Nov 24 06:05 log.47556137._009784.job.log.tgz.1
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc     10341 Nov 24 06:07 heartbeat.json
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc      8192 Nov 24 06:07 boinc_mmap_file
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc        23 Nov 24 06:07 wrapper_checkpoint.txt
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc        95 Nov 24 06:08 pilot_heartbeat.json
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc       893 Nov 24 06:08 pilotlog.txt
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc    129227 Nov 24 06:08 log.47556137._009784.job.log.1
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc       186 Nov 24 06:08 output.list
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc       620 Nov 24 06:08 runtime_log
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc    204800 Nov 24 06:08 result.tar.gz
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc      8636 Nov 24 06:08 runtime_log.err
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc       645 Nov 24 06:08 7UvKDmu7bh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaNLKDmwNMIZn.diag
[2025-11-24 06:08:03] -rw-r--r--. 1 boinc boinc     22611 Nov 24 06:08 stderr.txt
[2025-11-24 06:08:03] No HITS result produced
[2025-11-24 06:08:03]  *** Contents of shared directory: ***
[2025-11-24 06:08:03] total 400856
[2025-11-24 06:08:03] -rw-r--r--. 2 boinc boinc 409661005 Nov 24 05:57 ATLAS.root_0
[2025-11-24 06:08:03] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:57 start_atlas.sh
[2025-11-24 06:08:03] -rw-r--r--. 2 boinc boinc    590098 Nov 24 05:57 input.tar.gz
[2025-11-24 06:08:03] -rw-------. 1 boinc boinc    204800 Nov 24 06:08 result.tar.gz
06:08:05 (3585381): run_atlas exited; CPU time 93.665785
06:08:05 (3585381): called boinc_finish(0)

</stderr_txt>
]]>

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