Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:36:16 (12980): wrapper (7.7.26015): starting
03:36:16 (12980): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:36:16] Arguments: --nthreads 8
[2025-11-27 03:36:16] Threads: 8
[2025-11-27 03:36:16] Checking for CVMFS
[2025-11-27 03:36:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:36:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:36:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:36:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:36:19] 2.11.2.0 2066 89511 98160 153343 1 85 14591520 25165824 1288 130560 12 24477193 99.900 13079702 1737 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 03:36:19] CVMFS is ok
[2025-11-27 03:36:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:36:19] Checking for apptainer binary...
[2025-11-27 03:36:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:36:19] Running /usr/bin/apptainer --version
[2025-11-27 03:36:19] apptainer version 1.3.2-1.el7
[2025-11-27 03:36:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:36:42] cg-vwn446.simple-grid.lan
[2025-11-27 03:36:42] apptainer works
[2025-11-27 03:36:42] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:36:42] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:36:42] Starting ATLAS job with PandaID=6895365640
[2025-11-27 03:36:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:57:51]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:57:52] 2025-11-28 01:57:05,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:57:52] 2025-11-28 01:57:06,135 | INFO     | time since job start (83810s) is within the limit (172800.0s)
[2025-11-28 02:57:52] 2025-11-28 01:57:07,645 | INFO     | monitor loop #5639: job 0:6895365640 is in state 'finished'
[2025-11-28 02:57:52] 2025-11-28 01:57:07,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:57:52] 2025-11-28 01:57:08,142 | INFO     | time since job start (83812s) is within the limit (172800.0s)
[2025-11-28 02:57:52] 2025-11-28 01:57:09,302 | INFO     | PID=16788 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:57:52] 2025-11-28 01:57:09,302 | INFO     | .. there are 9 such processes running
[2025-11-28 02:57:52] 2025-11-28 01:57:10,149 | INFO     | monitor loop #5640: job 0:6895365640 is in state 'finished'
[2025-11-28 02:57:52] 2025-11-28 01:57:10,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:57:52] 2025-11-28 01:57:10,304 | INFO     | time since job start (83814s) is within the limit (172800.0s)
[2025-11-28 02:57:52] 2025-11-28 01:57:12,313 | INFO     | time since job start (83816s) is within the limit (172800.0s)
[2025-11-28 02:57:52] 2025-11-28 01:57:12,654 | INFO     | monitor loop #5641: job 0:6895365640 is in state 'finished'
[2025-11-28 02:57:52] 2025-11-28 01:57:12,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:57:52] 2025-11-28 01:57:13,460 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 02:57:52] 2025-11-28 01:57:13,462 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 02:57:52] 2025-11-28 01:57:13,465 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895365640/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:57:52] 2025-11-28 01:57:13,466 | INFO     | extracted standard info from prmon json
[2025-11-28 02:57:52] 2025-11-28 01:57:13,466 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:57:52] 2025-11-28 01:57:13,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:57:52] 2025-11-28 01:57:13,508 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:57:52] 2025-11-28 01:57:13,511 | INFO     | sum of square deviations: 786902685221.2225
[2025-11-28 02:57:52] 2025-11-28 01:57:13,619 | INFO     | sum of deviations: 2998989959122.801
[2025-11-28 02:57:52] 2025-11-28 01:57:13,619 | INFO     | mean x: 1764253317.5755131
[2025-11-28 02:57:52] 2025-11-28 01:57:13,620 | INFO     | mean y: 2840442.035923754
[2025-11-28 02:57:52] 2025-11-28 01:57:13,620 | INFO     | intersect: -6720961730.872658
[2025-11-28 02:57:52] 2025-11-28 01:57:13,622 | INFO     | chi2: 18.296928628171194
[2025-11-28 02:57:52] 2025-11-28 01:57:13,624 | INFO     | sum of square deviations: 778281184945.4177
[2025-11-28 02:57:52] 2025-11-28 01:57:13,709 | INFO     | sum of deviations: 3452583113219.12
[2025-11-28 02:57:52] 2025-11-28 01:57:13,710 | INFO     | mean x: 1764253165.0794702
[2025-11-28 02:57:52] 2025-11-28 01:57:13,710 | INFO     | mean y: 2848464.4988962472
[2025-11-28 02:57:52] 2025-11-28 01:57:13,710 | INFO     | intersect: -7823668227.696293
[2025-11-28 02:57:52] 2025-11-28 01:57:13,711 | INFO     | chi2: 15.074585485170115
[2025-11-28 02:57:52] 2025-11-28 01:57:13,712 | INFO     | current chi2=15.074585485170115 (change=17.61138827442187 %)
[2025-11-28 02:57:52] 2025-11-28 01:57:13,712 | INFO     | right removable region: 1358
[2025-11-28 02:57:52] 2025-11-28 01:57:13,714 | INFO     | sum of square deviations: 778280290075.4178
[2025-11-28 02:57:52] 2025-11-28 01:57:13,787 | INFO     | sum of deviations: 2447546307004.564
[2025-11-28 02:57:52] 2025-11-28 01:57:13,787 | INFO     | mean x: 1764253470.0794702
[2025-11-28 02:57:52] 2025-11-28 01:57:13,788 | INFO     | mean y: 2850194.105960265
[2025-11-28 02:57:52] 2025-11-28 01:57:13,788 | INFO     | intersect: -5545397809.058244
[2025-11-28 02:57:52] 2025-11-28 01:57:13,789 | INFO     | chi2: 13.948474785457032
[2025-11-28 02:57:52] 2025-11-28 01:57:13,790 | INFO     | current chi2=13.948474785457032 (change=23.766031617016793 %)
[2025-11-28 02:57:52] 2025-11-28 01:57:13,790 | INFO     | left removable region: 10
[2025-11-28 02:57:52] 2025-11-28 01:57:13,792 | INFO     | sum of square deviations: 759534268066.4941
[2025-11-28 02:57:52] 2025-11-28 01:57:13,863 | INFO     | sum of deviations: 2543838427776.6353
[2025-11-28 02:57:52] 2025-11-28 01:57:13,863 | INFO     | mean x: 1764253439.588279
[2025-11-28 02:57:52] 2025-11-28 01:57:13,863 | INFO     | mean y: 2868171.1669139466
[2025-11-28 02:57:52] 2025-11-28 01:57:13,863 | INFO     | intersect: -5905983982.912413
[2025-11-28 02:57:52] 2025-11-28 01:57:13,865 | INFO     | chi2: 7.1208248906884615
[2025-11-28 02:57:52] 2025-11-28 01:57:13,865 | INFO     | current memory leak: 3.35 B/s (using 1348 data points, chi2=7.12)
[2025-11-28 02:57:52] 2025-11-28 01:57:13,867 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 02:57:52] 2025-11-28 01:57:13,867 | INFO     | ..............................
[2025-11-28 02:57:52] 2025-11-28 01:57:13,867 | INFO     | . Timing measurements:
[2025-11-28 02:57:52] 2025-11-28 01:57:13,867 | INFO     | . get job = 0 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,867 | INFO     | . initial setup = 9 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,867 | INFO     | . payload setup = 144 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,868 | INFO     | . stage-in = 0 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,868 | INFO     | . payload execution = 83365 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,868 | INFO     | . stage-out = 6 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,868 | INFO     | . log creation = 3 s
[2025-11-28 02:57:52] 2025-11-28 01:57:13,868 | INFO     | ..............................
[2025-11-28 02:57:52] 2025-11-28 01:57:14,185 | INFO     | 
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | job summary report
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | --------------------------------------------------
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | PanDA job id: 6895365640
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | task id: 47556137
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | errors: (none)
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | pilot state: finished 
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | transexitcode: 0
[2025-11-28 02:57:52] 2025-11-28 01:57:14,186 | INFO     | exeerrorcode: 0
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | exeerrordiag: 
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | exitcode: 0
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | exitmsg: OK
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | cpuconsumptiontime: 314645 s
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | nevents: 1000
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | neventsw: 0
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | pid: 23406
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | pgrp: 23406
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | corecount: 8
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | event service: False
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | sizes: {0: 2284093, 1: 2284292, 2: 2284320, 12: 2284320, 23: 2284348, 34: 2284376, 45: 2284532, 55: 2284560, 66: 2284588, 77: 2284616, 88: 2284672, 98: 2284980, 10
[2025-11-28 02:57:52] 2025-11-28 01:57:14,187 | INFO     | --------------------------------------------------
[2025-11-28 02:57:52] 2025-11-28 01:57:14,188 | INFO     | 
[2025-11-28 02:57:52] 2025-11-28 01:57:14,188 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 02:57:52] 2025-11-28 01:57:14,326 | INFO     | time since job start (83818s) is within the limit (172800.0s)
[2025-11-28 02:57:52] 2025-11-28 01:57:14,404 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,404 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,404 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,404 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:57:52] 2025-11-28 01:57:14,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,406 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:57:52] 2025-11-28 01:57:14,406 | INFO     | job 6895365640 has completed (purged errors)
[2025-11-28 02:57:52] 2025-11-28 01:57:14,406 | INFO     | overall cleanup function is called
[2025-11-28 02:57:52] 2025-11-28 01:57:15,426 | INFO     | --- collectZombieJob: --- 10, [23406]
[2025-11-28 02:57:52] 2025-11-28 01:57:15,427 | INFO     | zombie collector waiting for pid 23406
[2025-11-28 02:57:52] 2025-11-28 01:57:15,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:57:52] 2025-11-28 01:57:15,427 | INFO     | collected zombie processes
[2025-11-28 02:57:52] 2025-11-28 01:57:15,427 | INFO     | will attempt to kill all subprocesses of pid=23406
[2025-11-28 02:57:52] 2025-11-28 01:57:15,535 | INFO     | process IDs to be killed: [23406] (in reverse order)
[2025-11-28 02:57:52] 2025-11-28 01:57:16,372 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:57:52] 2025-11-28 01:57:16,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:57:52] 2025-11-28 01:57:16,375 | INFO     | did not find any defunct processes belonging to 23406
[2025-11-28 02:57:52] 2025-11-28 01:57:16,378 | INFO     | did not find any defunct processes belonging to 23406
[2025-11-28 02:57:52] 2025-11-28 01:57:16,445 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:57:52] 2025-11-28 01:57:16,445 | INFO     | ready for new job
[2025-11-28 02:57:52] 2025-11-28 01:57:16,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:57:52] 2025-11-28 01:57:16,450 | INFO     | ***************************************
[2025-11-28 02:57:52] 2025-11-28 01:57:16,450 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:57:52] 2025-11-28 01:57:16,450 | INFO     | ***************************************
[2025-11-28 02:57:52] 2025-11-28 01:57:16,450 | INFO     | 
[2025-11-28 02:57:52] 2025-11-28 01:57:16,451 | INFO     | pilot is running in a VM
[2025-11-28 02:57:52] 2025-11-28 01:57:16,451 | INFO     | architecture information:
[2025-11-28 02:57:52] 2025-11-28 01:57:16,463 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:57:52] 2025-11-28 01:57:16,685 | INFO     | cat /etc/os-release:
[2025-11-28 02:57:52] NAME="CentOS Linux"
[2025-11-28 02:57:52] VERSION="7 (Core)"
[2025-11-28 02:57:52] ID="centos"
[2025-11-28 02:57:52] ID_LIKE="rhel fedora"
[2025-11-28 02:57:52] VERSION_ID="7"
[2025-11-28 02:57:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:57:52] ANSI_COLOR="0;31"
[2025-11-28 02:57:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:57:52] HOME_URL="https://www.centos.org/"
[2025-11-28 02:57:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:57:52] 
[2025-11-28 02:57:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:57:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:57:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:57:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:57:52] 
[2025-11-28 02:57:52] 2025-11-28 01:57:16,685 | INFO     | ***************************************
[2025-11-28 02:57:52] 2025-11-28 01:57:17,189 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 02:57:52] 2025-11-28 01:57:17,430 | INFO     | sufficient remaining disk space (495180578816 B)
[2025-11-28 02:57:52] 2025-11-28 01:57:17,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:57:52] 2025-11-28 01:57:17,430 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:57:52] 2025-11-28 01:57:17,431 | INFO     | update_server=False
[2025-11-28 02:57:52] 2025-11-28 01:57:17,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:57:52] 2025-11-28 01:57:17,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:57:52] 2025-11-28 01:57:17,697 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 02:57:52] 2025-11-28 01:57:17,698 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 02:57:52] 2025-11-28 01:57:17,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:57:52] 2025-11-28 01:57:17,698 | INFO     | will abort loop
[2025-11-28 02:57:52] 2025-11-28 01:57:17,858 | INFO     | all data control threads have been joined
[2025-11-28 02:57:52] 2025-11-28 01:57:18,041 | INFO     | all payload control threads have been joined
[2025-11-28 02:57:52] 2025-11-28 01:57:18,263 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:57:52] 2025-11-28 01:57:18,437 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:18,704 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:18,759 | INFO     | all job control threads have been joined
[2025-11-28 02:57:52] 2025-11-28 01:57:18,831 | INFO     | [job] validate thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:18,864 | INFO     | [data] control thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:57:52] 2025-11-28 01:57:19,048 | INFO     | [payload] control thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,267 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,338 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,452 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,637 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,759 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,762 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:19,766 | INFO     | [job] control thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:20,008 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:20,019 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:20,271 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:21,441 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:57:52] 2025-11-28 01:57:43,238 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:57:52] 2025-11-28 01:57:44,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864949978944)>', '<ExcThread(monitor, started 139864511072000)>']
[2025-11-28 02:57:52] 2025-11-28 01:57:47,501 | INFO     | PID=16788 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:57:52] 2025-11-28 01:57:47,501 | INFO     | .. there are 9 such processes running
[2025-11-28 02:57:52] 2025-11-28 01:57:47,504 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:57:52] 2025-11-28 01:57:47,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:57:52] 2025-11-28 01:57:47,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:57:52] 2025-11-28 01:57:47,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:57:52] 2025-11-28 01:57:47,505 | INFO     | [monitor] control thread has ended
[2025-11-28 02:57:52] 2025-11-28 01:57:49,419 | INFO     | all workflow threads have been joined
[2025-11-28 02:57:52] 2025-11-28 01:57:49,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:57:52] 2025-11-28 01:57:49,420 | INFO     | traces error code: 0
[2025-11-28 02:57:52] 2025-11-28 01:57:49,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:57:52] 2025-11-28 01:57:49,539 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:57:52] 2025-11-28 01:57:49,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:57:52] 2025-11-28 01:57:49,546 [wrapper] pilotpid: 16788
[2025-11-28 02:57:52] 2025-11-28 01:57:49,552 [wrapper] Pilot exit status: 0
[2025-11-28 02:57:52] 2025-11-28 01:57:49,574 [wrapper] pandaids: 6895365640
[2025-11-28 02:57:52] 2025-11-28 01:57:49,623 [wrapper] cleanup supervisor_pilot 27079 16789
[2025-11-28 02:57:52] 2025-11-28 01:57:49,637 [wrapper] Test setup, not cleaning
[2025-11-28 02:57:52] 2025-11-28 01:57:49,690 [wrapper] apfmon messages muted
[2025-11-28 02:57:52] 2025-11-28 01:57:49,765 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:57:52] 2025-11-28 01:57:49,809 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:57:52]  *** Error codes and diagnostics ***
[2025-11-28 02:57:52]     "exeErrorCode": 0,
[2025-11-28 02:57:52]     "exeErrorDiag": "",
[2025-11-28 02:57:52]     "pilotErrorCode": 0,
[2025-11-28 02:57:52]     "pilotErrorDiag": "",
[2025-11-28 02:57:52]  *** Listing of results directory ***
[2025-11-28 02:57:52] total 1325764
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-28 02:57:52] -rwx------. 1 boinc boinc     36292 Nov 23 18:27 runpilot2-wrapper.sh
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc      5112 Nov 23 18:27 queuedata.json
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc       100 Nov 27 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:57:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 03:36 run_atlas
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc       105 Nov 27 03:36 job.xml
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc      6393 Nov 27 03:36 init_data.xml
[2025-11-28 02:57:52] -rw-r--r--. 2 boinc boinc 409789666 Nov 27 03:36 EVNT.47483658._000826.pool.root.1
[2025-11-28 02:57:52] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:36 start_atlas.sh
[2025-11-28 02:57:52] drwxrwx--x. 2 boinc boinc        68 Nov 27 03:36 shared
[2025-11-28 02:57:52] -rw-r--r--. 2 boinc boinc    590093 Nov 27 03:36 input.tar.gz
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc         0 Nov 27 03:36 boinc_lockfile
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc      2785 Nov 27 03:36 pandaJob.out
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc    991554 Nov 27 03:40 agis_schedconf.cvmfs.json
[2025-11-28 02:57:52] drwx------. 5 boinc boinc      4096 Nov 27 03:40 pilot3
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc       533 Nov 28 02:31 boinc_task_state.xml
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc 916707828 Nov 28 02:54 HITS.47556137._008129.pool.root.1
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc      1028 Nov 28 02:55 memory_monitor_summary.json
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc   1516240 Nov 28 02:55 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc   2441009 Nov 28 02:55 log.47556137._008129.job.log.tgz.1
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc      8627 Nov 28 02:57 heartbeat.json
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc      8192 Nov 28 02:57 boinc_mmap_file
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc        29 Nov 28 02:57 wrapper_checkpoint.txt
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc        95 Nov 28 02:57 pilot_heartbeat.json
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc      5070 Nov 28 02:57 pilotlog.txt
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc  11147497 Nov 28 02:57 log.47556137._008129.job.log.1
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc       353 Nov 28 02:57 output.list
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc       620 Nov 28 02:57 runtime_log
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc  13608960 Nov 28 02:57 result.tar.gz
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc      8817 Nov 28 02:57 runtime_log.err
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc       662 Nov 28 02:57 bSMMDmh2Sh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIfIKDmwMljen.diag
[2025-11-28 02:57:52] -rw-r--r--. 1 boinc boinc     21489 Nov 28 02:57 stderr.txt
[2025-11-28 02:57:52] HITS file was successfully produced:
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc 916707828 Nov 28 02:54 shared/HITS.pool.root.1
[2025-11-28 02:57:52]  *** Contents of shared directory: ***
[2025-11-28 02:57:52] total 1309300
[2025-11-28 02:57:52] -rw-r--r--. 2 boinc boinc 409789666 Nov 27 03:36 ATLAS.root_0
[2025-11-28 02:57:52] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:36 start_atlas.sh
[2025-11-28 02:57:52] -rw-r--r--. 2 boinc boinc    590093 Nov 27 03:36 input.tar.gz
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc 916707828 Nov 28 02:54 HITS.pool.root.1
[2025-11-28 02:57:52] -rw-------. 1 boinc boinc  13608960 Nov 28 02:57 result.tar.gz
02:57:53 (12980): run_atlas exited; CPU time 315226.219699
02:57:53 (12980): called boinc_finish(0)

</stderr_txt>
]]>

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