Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:35:50 (526): wrapper (7.7.26015): starting
08:35:50 (526): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:35:50] Arguments: --nthreads 8
[2025-11-24 08:35:50] Threads: 8
[2025-11-24 08:35:50] Checking for CVMFS
[2025-11-24 08:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:35:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:35:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:35:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:35:50] 2.11.2.0 2830 54344 82820 153247 0 82 15530943 20275201 1 130560 0 10863681 99.774 3283245 28542 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 08:35:50] CVMFS is ok
[2025-11-24 08:35:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:35:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:35:50] Further information can be found at the LHC@home message board.
[2025-11-24 08:35:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:35:50] Checking for apptainer binary...
[2025-11-24 08:35:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:35:50] Running /usr/bin/apptainer --version
[2025-11-24 08:35:50] apptainer version 1.3.2-1.el7
[2025-11-24 08:35:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:35:52] c-204-15.aglt2.org
[2025-11-24 08:35:52] apptainer works
[2025-11-24 08:35:52] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:35:52] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:35:52] Starting ATLAS job with PandaID=6894053124
[2025-11-24 08:35:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:14:41]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:14:41] 2025-11-24 17:14:06,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,538 | INFO     | time since job start (13077s) is within the limit (172800.0s)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,856 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 12:14:41] 2025-11-24 17:14:07,859 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-24 12:14:41] 2025-11-24 17:14:07,861 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894053124/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,862 | INFO     | extracted standard info from prmon json
[2025-11-24 12:14:41] 2025-11-24 17:14:07,862 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:14:41] 2025-11-24 17:14:07,862 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:14:41] 2025-11-24 17:14:07,862 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 12:14:41] 2025-11-24 17:14:07,863 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 12:14:41] 2025-11-24 17:14:07,867 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:14:41] 2025-11-24 17:14:07,867 | INFO     | sum of square deviations: 3038856977.5
[2025-11-24 12:14:41] 2025-11-24 17:14:07,868 | INFO     | sum of deviations: -8183863181.499977
[2025-11-24 12:14:41] 2025-11-24 17:14:07,869 | INFO     | mean x: 1763997899.5
[2025-11-24 12:14:41] 2025-11-24 17:14:07,869 | INFO     | mean y: 2563569.612149533
[2025-11-24 12:14:41] 2025-11-24 17:14:07,869 | INFO     | intersect: 4753138397.20334
[2025-11-24 12:14:41] 2025-11-24 17:14:07,869 | INFO     | chi2: 2.6252369243822073
[2025-11-24 12:14:41] 2025-11-24 17:14:07,870 | INFO     | sum of square deviations: 2830787960.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,871 | INFO     | sum of deviations: 7021640216.000003
[2025-11-24 12:14:41] 2025-11-24 17:14:07,871 | INFO     | mean x: 1763997747.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,871 | INFO     | mean y: 2574505.023923445
[2025-11-24 12:14:41] 2025-11-24 17:14:07,871 | INFO     | intersect: -4372941321.76679
[2025-11-24 12:14:41] 2025-11-24 17:14:07,872 | INFO     | chi2: 1.8022569810978437
[2025-11-24 12:14:41] 2025-11-24 17:14:07,872 | INFO     | current chi2=1.8022569810978437 (change=31.34878744241471 %)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,872 | INFO     | sum of square deviations: 2632440055.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,873 | INFO     | sum of deviations: 6889417683.5000105
[2025-11-24 12:14:41] 2025-11-24 17:14:07,873 | INFO     | mean x: 1763997594.5
[2025-11-24 12:14:41] 2025-11-24 17:14:07,874 | INFO     | mean y: 2574403.348039216
[2025-11-24 12:14:41] 2025-11-24 17:14:07,874 | INFO     | intersect: -4614023113.513472
[2025-11-24 12:14:41] 2025-11-24 17:14:07,874 | INFO     | chi2: 1.802889917889705
[2025-11-24 12:14:41] 2025-11-24 17:14:07,874 | INFO     | current chi2=1.802889917889705 (change=-0.03511911999785011 %)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,874 | INFO     | right removable region: 203
[2025-11-24 12:14:41] 2025-11-24 17:14:07,875 | INFO     | sum of square deviations: 2830787960.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,876 | INFO     | sum of deviations: -43551937773.00001
[2025-11-24 12:14:41] 2025-11-24 17:14:07,876 | INFO     | mean x: 1763998052.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,876 | INFO     | mean y: 2589230.411483254
[2025-11-24 12:14:41] 2025-11-24 17:14:07,876 | INFO     | intersect: 27141864399.717075
[2025-11-24 12:14:41] 2025-11-24 17:14:07,877 | INFO     | chi2: 1.0666838872473472
[2025-11-24 12:14:41] 2025-11-24 17:14:07,877 | INFO     | current chi2=1.0666838872473472 (change=59.36809065344195 %)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,877 | INFO     | sum of square deviations: 2632440055.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,878 | INFO     | sum of deviations: -48420391144.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,878 | INFO     | mean x: 1763998204.5
[2025-11-24 12:14:41] 2025-11-24 17:14:07,878 | INFO     | mean y: 2592973.4803921566
[2025-11-24 12:14:41] 2025-11-24 17:14:07,879 | INFO     | intersect: 32449099353.35832
[2025-11-24 12:14:41] 2025-11-24 17:14:07,879 | INFO     | chi2: 1.0262152727897274
[2025-11-24 12:14:41] 2025-11-24 17:14:07,879 | INFO     | current chi2=1.0262152727897274 (change=3.793871356025819 %)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,879 | INFO     | left removable region: 20
[2025-11-24 12:14:41] 2025-11-24 17:14:07,880 | INFO     | sum of square deviations: 1900284932.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,881 | INFO     | sum of deviations: -23477361702.000008
[2025-11-24 12:14:41] 2025-11-24 17:14:07,881 | INFO     | mean x: 1763998174.0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,881 | INFO     | mean y: 2597951.8524590163
[2025-11-24 12:14:41] 2025-11-24 17:14:07,881 | INFO     | intersect: 21796183995.32983
[2025-11-24 12:14:41] 2025-11-24 17:14:07,881 | INFO     | chi2: 0.14857023907802558
[2025-11-24 12:14:41] 2025-11-24 17:14:07,881 | INFO     | current memory leak: -12.35 B/s (using 183 data points, chi2=0.15)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | could have reported an average CPU frequency of 2044 MHz (11 samples)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | ..............................
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | . Timing measurements:
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | . get job = 0 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | . initial setup = 2 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | . payload setup = 10 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,882 | INFO     | . stage-in = 0 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,883 | INFO     | . payload execution = 13032 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,883 | INFO     | . stage-out = 2 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,883 | INFO     | . log creation = 0 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,883 | INFO     | ..............................
[2025-11-24 12:14:41] 2025-11-24 17:14:07,970 | INFO     | 
[2025-11-24 12:14:41] 2025-11-24 17:14:07,974 | INFO     | job summary report
[2025-11-24 12:14:41] 2025-11-24 17:14:07,976 | INFO     | --------------------------------------------------
[2025-11-24 12:14:41] 2025-11-24 17:14:07,976 | INFO     | PanDA job id: 6894053124
[2025-11-24 12:14:41] 2025-11-24 17:14:07,976 | INFO     | task id: 47523618
[2025-11-24 12:14:41] 2025-11-24 17:14:07,976 | INFO     | errors: (none)
[2025-11-24 12:14:41] 2025-11-24 17:14:07,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:14:41] 2025-11-24 17:14:07,977 | INFO     | pilot state: finished 
[2025-11-24 12:14:41] 2025-11-24 17:14:07,977 | INFO     | transexitcode: 0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,977 | INFO     | exeerrorcode: 0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,977 | INFO     | exeerrordiag: 
[2025-11-24 12:14:41] 2025-11-24 17:14:07,977 | INFO     | exitcode: 0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,978 | INFO     | exitmsg: OK
[2025-11-24 12:14:41] 2025-11-24 17:14:07,978 | INFO     | cpuconsumptiontime: 97142 s
[2025-11-24 12:14:41] 2025-11-24 17:14:07,978 | INFO     | nevents: 400
[2025-11-24 12:14:41] 2025-11-24 17:14:07,978 | INFO     | neventsw: 0
[2025-11-24 12:14:41] 2025-11-24 17:14:07,978 | INFO     | pid: 11889
[2025-11-24 12:14:41] 2025-11-24 17:14:07,979 | INFO     | pgrp: 11889
[2025-11-24 12:14:41] 2025-11-24 17:14:07,979 | INFO     | corecount: 8
[2025-11-24 12:14:41] 2025-11-24 17:14:07,979 | INFO     | event service: False
[2025-11-24 12:14:41] 2025-11-24 17:14:07,980 | INFO     | sizes: {0: 2283714, 1: 2283969, 7: 2284231, 12: 2284259, 13046: 2314358, 13049: 2323356, 13052: 2323540, 13061: 2323734}
[2025-11-24 12:14:41] 2025-11-24 17:14:07,980 | INFO     | --------------------------------------------------
[2025-11-24 12:14:41] 2025-11-24 17:14:07,980 | INFO     | 
[2025-11-24 12:14:41] 2025-11-24 17:14:07,981 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 12:14:41] 2025-11-24 17:14:08,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,010 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,011 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:14:41] 2025-11-24 17:14:08,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:14:41] 2025-11-24 17:14:08,014 | INFO     | job 6894053124 has completed (purged errors)
[2025-11-24 12:14:41] 2025-11-24 17:14:08,015 | INFO     | overall cleanup function is called
[2025-11-24 12:14:41] 2025-11-24 17:14:09,024 | INFO     | --- collectZombieJob: --- 10, [11889]
[2025-11-24 12:14:41] 2025-11-24 17:14:09,024 | INFO     | zombie collector waiting for pid 11889
[2025-11-24 12:14:41] 2025-11-24 17:14:09,024 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:14:41] 2025-11-24 17:14:09,024 | INFO     | collected zombie processes
[2025-11-24 12:14:41] 2025-11-24 17:14:09,025 | INFO     | will attempt to kill all subprocesses of pid=11889
[2025-11-24 12:14:41] 2025-11-24 17:14:09,116 | INFO     | process IDs to be killed: [11889] (in reverse order)
[2025-11-24 12:14:41] 2025-11-24 17:14:09,172 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:14:41] 2025-11-24 17:14:09,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:14:41] 2025-11-24 17:14:09,177 | INFO     | did not find any defunct processes belonging to 11889
[2025-11-24 12:14:41] 2025-11-24 17:14:09,181 | INFO     | did not find any defunct processes belonging to 11889
[2025-11-24 12:14:41] 2025-11-24 17:14:09,184 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:14:41] 2025-11-24 17:14:09,184 | INFO     | ready for new job
[2025-11-24 12:14:41] 2025-11-24 17:14:09,184 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:14:41] 2025-11-24 17:14:09,187 | INFO     | ***************************************
[2025-11-24 12:14:41] 2025-11-24 17:14:09,187 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:14:41] 2025-11-24 17:14:09,187 | INFO     | ***************************************
[2025-11-24 12:14:41] 2025-11-24 17:14:09,187 | INFO     | 
[2025-11-24 12:14:41] 2025-11-24 17:14:09,188 | INFO     | architecture information:
[2025-11-24 12:14:41] 2025-11-24 17:14:09,189 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:14:41] 2025-11-24 17:14:09,206 | INFO     | cat /etc/os-release:
[2025-11-24 12:14:41] NAME="CentOS Linux"
[2025-11-24 12:14:41] VERSION="7 (Core)"
[2025-11-24 12:14:41] ID="centos"
[2025-11-24 12:14:41] ID_LIKE="rhel fedora"
[2025-11-24 12:14:41] VERSION_ID="7"
[2025-11-24 12:14:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:14:41] ANSI_COLOR="0;31"
[2025-11-24 12:14:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:14:41] HOME_URL="https://www.centos.org/"
[2025-11-24 12:14:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:14:41] 
[2025-11-24 12:14:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:14:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:14:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:14:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:14:41] 
[2025-11-24 12:14:41] 2025-11-24 17:14:09,207 | INFO     | ***************************************
[2025-11-24 12:14:41] 2025-11-24 17:14:09,710 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 12:14:41] 2025-11-24 17:14:09,730 | INFO     | sufficient remaining disk space (18300796928 B)
[2025-11-24 12:14:41] 2025-11-24 17:14:09,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:14:41] 2025-11-24 17:14:09,731 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:14:41] 2025-11-24 17:14:09,731 | INFO     | update_server=False
[2025-11-24 12:14:41] 2025-11-24 17:14:09,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:14:41] 2025-11-24 17:14:09,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:14:41] 2025-11-24 17:14:09,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:14:41] 2025-11-24 17:14:09,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:14:41] 2025-11-24 17:14:09,834 | INFO     | all data control threads have been joined
[2025-11-24 12:14:41] 2025-11-24 17:14:09,989 | INFO     | all payload control threads have been joined
[2025-11-24 12:14:41] 2025-11-24 17:14:10,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:14:41] 2025-11-24 17:14:10,489 | INFO     | aborting loop
[2025-11-24 12:14:41] 2025-11-24 17:14:10,736 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:10,738 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:10,839 | INFO     | [data] control thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:10,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:10,994 | INFO     | [payload] control thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,340 | INFO     | [job] validate thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,388 | INFO     | all job control threads have been joined
[2025-11-24 12:14:41] 2025-11-24 17:14:11,443 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,494 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,691 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,696 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,697 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:11,740 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:12,010 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:12,198 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:12,393 | INFO     | [job] control thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:13,738 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:14:41] 2025-11-24 17:14:30,929 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:14:41] 2025-11-24 17:14:32,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501539878720)>', '<ExcThread(monitor, started 140501080577792)>']
[2025-11-24 12:14:41] 2025-11-24 17:14:37,801 | INFO     | all workflow threads have been joined
[2025-11-24 12:14:41] 2025-11-24 17:14:37,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:14:41] 2025-11-24 17:14:37,802 | INFO     | traces error code: 0
[2025-11-24 12:14:41] 2025-11-24 17:14:37,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:14:41] 2025-11-24 17:14:40,754 | INFO     | PID=5270 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 12:14:41] 2025-11-24 17:14:40,755 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:14:41] 2025-11-24 17:14:40,755 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:14:41] 2025-11-24 17:14:40,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:14:41] 2025-11-24 17:14:40,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:14:41] 2025-11-24 17:14:40,755 | INFO     | [monitor] control thread has ended
[2025-11-24 12:14:41] 2025-11-24 17:14:40,878 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:14:41] 2025-11-24 17:14:40,883 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:14:41] 2025-11-24 17:14:40,887 [wrapper] pilotpid: 5270
[2025-11-24 12:14:41] 2025-11-24 17:14:40,892 [wrapper] Pilot exit status: 0
[2025-11-24 12:14:41] 2025-11-24 17:14:40,913 [wrapper] pandaids: 6894053124
[2025-11-24 12:14:41] 2025-11-24 17:14:40,957 [wrapper] cleanup supervisor_pilot  7288 5271
[2025-11-24 12:14:41] 2025-11-24 17:14:40,961 [wrapper] Test setup, not cleaning
[2025-11-24 12:14:41] 2025-11-24 17:14:40,966 [wrapper] apfmon messages muted
[2025-11-24 12:14:41] 2025-11-24 17:14:40,970 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:14:41] 2025-11-24 17:14:40,975 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:14:41]  *** Error codes and diagnostics ***
[2025-11-24 12:14:41]     "exeErrorCode": 0,
[2025-11-24 12:14:41]     "exeErrorDiag": "",
[2025-11-24 12:14:41]     "pilotErrorCode": 0,
[2025-11-24 12:14:41]     "pilotErrorDiag": "",
[2025-11-24 12:14:41]  *** Listing of results directory ***
[2025-11-24 12:14:41] total 595500
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 12:42 queuedata.json
[2025-11-24 12:14:41] -rwx------ 1 boincer umatlas     36292 Nov 23 12:43 runpilot2-wrapper.sh
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas       100 Nov 24 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:14:41] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 08:35 run_atlas
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas       105 Nov 24 08:35 job.xml
[2025-11-24 12:14:41] -rw-r--r-- 2 boincer umatlas 306398582 Nov 24 08:35 EVNT.47523616._000003.pool.root.1
[2025-11-24 12:14:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 08:35 start_atlas.sh
[2025-11-24 12:14:41] drwxrwx--x 2 boincer umatlas      4096 Nov 24 08:35 shared
[2025-11-24 12:14:41] -rw-r--r-- 2 boincer umatlas    589949 Nov 24 08:35 input.tar.gz
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas         0 Nov 24 08:35 boinc_lockfile
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas      2611 Nov 24 08:35 pandaJob.out
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas        57 Nov 24 08:35 setup.sh.local
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas    988280 Nov 24 08:36 agis_schedconf.cvmfs.json
[2025-11-24 12:14:41] drwx------ 5 boincer umatlas      4096 Nov 24 08:36 pilot3
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas      5911 Nov 24 12:12 init_data.xml
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas 294954309 Nov 24 12:13 HITS.47523618._000070.pool.root.1
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas       530 Nov 24 12:13 boinc_task_state.xml
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas      1050 Nov 24 12:13 memory_monitor_summary.json
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas   1516227 Nov 24 12:13 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas    454698 Nov 24 12:13 log.47523618._000070.job.log.tgz.1
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas      7836 Nov 24 12:14 heartbeat.json
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas        28 Nov 24 12:14 wrapper_checkpoint.txt
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 12:14 boinc_mmap_file
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas        95 Nov 24 12:14 pilot_heartbeat.json
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas       744 Nov 24 12:14 pilotlog.txt
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas   1808192 Nov 24 12:14 log.47523618._000070.job.log.1
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas       357 Nov 24 12:14 output.list
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas       620 Nov 24 12:14 runtime_log
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas   2283520 Nov 24 12:14 result.tar.gz
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 12:14 runtime_log.err
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas       663 Nov 24 12:14 eC0LDmuITh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS4KKDmtX0bFm.diag
[2025-11-24 12:14:41] -rw-r--r-- 1 boincer umatlas     21200 Nov 24 12:14 stderr.txt
[2025-11-24 12:14:41] HITS file was successfully produced:
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas 294954309 Nov 24 12:13 shared/HITS.pool.root.1
[2025-11-24 12:14:41]  *** Contents of shared directory: ***
[2025-11-24 12:14:41] total 590096
[2025-11-24 12:14:41] -rw-r--r-- 2 boincer umatlas 306398582 Nov 24 08:35 ATLAS.root_0
[2025-11-24 12:14:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 08:35 start_atlas.sh
[2025-11-24 12:14:41] -rw-r--r-- 2 boincer umatlas    589949 Nov 24 08:35 input.tar.gz
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas 294954309 Nov 24 12:13 HITS.pool.root.1
[2025-11-24 12:14:41] -rw------- 1 boincer umatlas   2283520 Nov 24 12:14 result.tar.gz
12:14:42 (526): run_atlas exited; CPU time 97096.966205
12:14:43 (526): called boinc_finish(0)

</stderr_txt>
]]>

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