Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:48 (12161): wrapper (7.7.26015): starting
15:56:48 (12161): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:56:48] Arguments: --nthreads 8
[2025-11-26 15:56:48] Threads: 8
[2025-11-26 15:56:48] Checking for CVMFS
[2025-11-26 15:56:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:56:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:56:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:56:52] 2.11.2.0 15981 190489 137528 153324 3 130 21560333 25165825 1288 130560 12 67397185 99.882 36618070 2377 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 15:56:52] CVMFS is ok
[2025-11-26 15:56:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:56:52] Checking for apptainer binary...
[2025-11-26 15:56:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:56:52] Running /usr/bin/apptainer --version
[2025-11-26 15:56:52] apptainer version 1.3.2-1.el7
[2025-11-26 15:56:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:56:56] cg-vwn479.simple-grid.lan
[2025-11-26 15:56:56] apptainer works
[2025-11-26 15:56:56] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:56:56] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:56:56] Starting ATLAS job with PandaID=6895365656
[2025-11-26 15:56:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:53:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:53:19] 2025-11-27 11:52:31,605 | INFO     | monitor loop #5089: job 0:6895365656 is in state 'finished'
[2025-11-27 12:53:19] 2025-11-27 11:52:31,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:53:19] 2025-11-27 11:52:32,801 | INFO     | time since job start (75108s) is within the limit (172800.0s)
[2025-11-27 12:53:19] 2025-11-27 11:52:34,125 | INFO     | monitor loop #5090: job 0:6895365656 is in state 'finished'
[2025-11-27 12:53:19] 2025-11-27 11:52:34,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:53:19] 2025-11-27 11:52:34,807 | INFO     | time since job start (75110s) is within the limit (172800.0s)
[2025-11-27 12:53:19] 2025-11-27 11:52:36,004 | INFO     | PID=15993 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 12:53:19] 2025-11-27 11:52:36,004 | INFO     | .. there are 9 such processes running
[2025-11-27 12:53:19] 2025-11-27 11:52:36,629 | INFO     | monitor loop #5091: job 0:6895365656 is in state 'finished'
[2025-11-27 12:53:19] 2025-11-27 11:52:36,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:53:19] 2025-11-27 11:52:37,006 | INFO     | time since job start (75113s) is within the limit (172800.0s)
[2025-11-27 12:53:19] 2025-11-27 11:52:39,014 | INFO     | time since job start (75115s) is within the limit (172800.0s)
[2025-11-27 12:53:19] 2025-11-27 11:52:39,134 | INFO     | monitor loop #5092: job 0:6895365656 is in state 'finished'
[2025-11-27 12:53:19] 2025-11-27 11:52:39,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:53:19] 2025-11-27 11:52:40,252 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:53:19] 2025-11-27 11:52:40,253 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-27 12:53:19] 2025-11-27 11:52:40,255 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895365656/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:53:19] 2025-11-27 11:52:40,256 | INFO     | extracted standard info from prmon json
[2025-11-27 12:53:19] 2025-11-27 11:52:40,256 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:53:19] 2025-11-27 11:52:40,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:53:19] 2025-11-27 11:52:40,284 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:53:19] 2025-11-27 11:52:40,286 | INFO     | sum of square deviations: 565837426609.2635
[2025-11-27 12:53:19] 2025-11-27 11:52:40,379 | INFO     | sum of deviations: 2363337597664.136
[2025-11-27 12:53:19] 2025-11-27 11:52:40,380 | INFO     | mean x: 1764206992.5139117
[2025-11-27 12:53:19] 2025-11-27 11:52:40,380 | INFO     | mean y: 2843695.1685761046
[2025-11-27 12:53:19] 2025-11-27 11:52:40,380 | INFO     | intersect: -7365733425.038904
[2025-11-27 12:53:19] 2025-11-27 11:52:40,381 | INFO     | chi2: 20.460014901805888
[2025-11-27 12:53:19] 2025-11-27 11:52:40,383 | INFO     | sum of square deviations: 558920549221.6022
[2025-11-27 12:53:19] 2025-11-27 11:52:40,446 | INFO     | sum of deviations: 2763772422221.209
[2025-11-27 12:53:19] 2025-11-27 11:52:40,447 | INFO     | mean x: 1764206840.0180771
[2025-11-27 12:53:19] 2025-11-27 11:52:40,447 | INFO     | mean y: 2852522.217748562
[2025-11-27 12:53:19] 2025-11-27 11:52:40,447 | INFO     | intersect: -8720867187.72405
[2025-11-27 12:53:19] 2025-11-27 11:52:40,449 | INFO     | chi2: 17.320488862699918
[2025-11-27 12:53:19] 2025-11-27 11:52:40,449 | INFO     | current chi2=17.320488862699918 (change=15.344690872287009 %)
[2025-11-27 12:53:19] 2025-11-27 11:52:40,449 | INFO     | right removable region: 1216
[2025-11-27 12:53:19] 2025-11-27 11:52:40,451 | INFO     | sum of square deviations: 558919793431.6025
[2025-11-27 12:53:19] 2025-11-27 11:52:40,506 | INFO     | sum of deviations: 1855284485669.7188
[2025-11-27 12:53:19] 2025-11-27 11:52:40,507 | INFO     | mean x: 1764207145.0180771
[2025-11-27 12:53:19] 2025-11-27 11:52:40,507 | INFO     | mean y: 2854894.69433032
[2025-11-27 12:53:19] 2025-11-27 11:52:40,507 | INFO     | intersect: -5853273630.587983
[2025-11-27 12:53:19] 2025-11-27 11:52:40,509 | INFO     | chi2: 15.838574099798183
[2025-11-27 12:53:19] 2025-11-27 11:52:40,509 | INFO     | current chi2=15.838574099798183 (change=22.5876707528683 %)
[2025-11-27 12:53:19] 2025-11-27 11:52:40,509 | INFO     | left removable region: 10
[2025-11-27 12:53:19] 2025-11-27 11:52:40,511 | INFO     | sum of square deviations: 543900832048.59686
[2025-11-27 12:53:19] 2025-11-27 11:52:40,560 | INFO     | sum of deviations: 1901171860613.9758
[2025-11-27 12:53:19] 2025-11-27 11:52:40,560 | INFO     | mean x: 1764207114.5273633
[2025-11-27 12:53:19] 2025-11-27 11:52:40,560 | INFO     | mean y: 2875790.849087894
[2025-11-27 12:53:19] 2025-11-27 11:52:40,560 | INFO     | intersect: -6163801523.839631
[2025-11-27 12:53:19] 2025-11-27 11:52:40,561 | INFO     | chi2: 8.440192181575414
[2025-11-27 12:53:19] 2025-11-27 11:52:40,562 | INFO     | current memory leak: 3.50 B/s (using 1206 data points, chi2=8.44)
[2025-11-27 12:53:19] 2025-11-27 11:52:40,563 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-11-27 12:53:19] 2025-11-27 11:52:40,563 | INFO     | ..............................
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . Timing measurements:
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . get job = 0 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . initial setup = 7 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . payload setup = 155 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . stage-in = 0 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . payload execution = 74653 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . stage-out = 7 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | . log creation = 1 s
[2025-11-27 12:53:19] 2025-11-27 11:52:40,564 | INFO     | ..............................
[2025-11-27 12:53:19] 2025-11-27 11:52:41,022 | INFO     | time since job start (75117s) is within the limit (172800.0s)
[2025-11-27 12:53:19] 2025-11-27 11:52:41,131 | INFO     | 
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | job summary report
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | --------------------------------------------------
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | PanDA job id: 6895365656
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | task id: 47556137
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | errors: (none)
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | pilot state: finished 
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | transexitcode: 0
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | exeerrorcode: 0
[2025-11-27 12:53:19] 2025-11-27 11:52:41,132 | INFO     | exeerrordiag: 
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | exitcode: 0
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | exitmsg: OK
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | cpuconsumptiontime: 281764 s
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | nevents: 1000
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | neventsw: 0
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | pid: 22574
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | pgrp: 22574
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | corecount: 8
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | event service: False
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | sizes: {0: 2283486, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 91: 2285321, 98
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | --------------------------------------------------
[2025-11-27 12:53:19] 2025-11-27 11:52:41,133 | INFO     | 
[2025-11-27 12:53:19] 2025-11-27 11:52:41,134 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-27 12:53:19] 2025-11-27 11:52:41,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:53:19] 2025-11-27 11:52:41,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:53:19] 2025-11-27 11:52:41,699 | INFO     | job 6895365656 has completed (purged errors)
[2025-11-27 12:53:19] 2025-11-27 11:52:41,699 | INFO     | overall cleanup function is called
[2025-11-27 12:53:19] 2025-11-27 11:52:42,718 | INFO     | --- collectZombieJob: --- 10, [22574]
[2025-11-27 12:53:19] 2025-11-27 11:52:42,719 | INFO     | zombie collector waiting for pid 22574
[2025-11-27 12:53:19] 2025-11-27 11:52:42,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:53:19] 2025-11-27 11:52:42,719 | INFO     | collected zombie processes
[2025-11-27 12:53:19] 2025-11-27 11:52:42,719 | INFO     | will attempt to kill all subprocesses of pid=22574
[2025-11-27 12:53:19] 2025-11-27 11:52:42,821 | INFO     | process IDs to be killed: [22574] (in reverse order)
[2025-11-27 12:53:19] 2025-11-27 11:52:43,656 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:53:19] 2025-11-27 11:52:43,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:53:19] 2025-11-27 11:52:43,659 | INFO     | did not find any defunct processes belonging to 22574
[2025-11-27 12:53:19] 2025-11-27 11:52:43,661 | INFO     | did not find any defunct processes belonging to 22574
[2025-11-27 12:53:19] 2025-11-27 11:52:43,684 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:53:19] 2025-11-27 11:52:43,684 | INFO     | ready for new job
[2025-11-27 12:53:19] 2025-11-27 11:52:43,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:53:19] 2025-11-27 11:52:43,688 | INFO     | ***************************************
[2025-11-27 12:53:19] 2025-11-27 11:52:43,689 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:53:19] 2025-11-27 11:52:43,689 | INFO     | ***************************************
[2025-11-27 12:53:19] 2025-11-27 11:52:43,689 | INFO     | 
[2025-11-27 12:53:19] 2025-11-27 11:52:43,689 | INFO     | pilot is running in a VM
[2025-11-27 12:53:19] 2025-11-27 11:52:43,689 | INFO     | architecture information:
[2025-11-27 12:53:19] 2025-11-27 11:52:43,696 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:53:19] 2025-11-27 11:52:43,863 | INFO     | cat /etc/os-release:
[2025-11-27 12:53:19] NAME="CentOS Linux"
[2025-11-27 12:53:19] VERSION="7 (Core)"
[2025-11-27 12:53:19] ID="centos"
[2025-11-27 12:53:19] ID_LIKE="rhel fedora"
[2025-11-27 12:53:19] VERSION_ID="7"
[2025-11-27 12:53:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:53:19] ANSI_COLOR="0;31"
[2025-11-27 12:53:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:53:19] HOME_URL="https://www.centos.org/"
[2025-11-27 12:53:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:53:19] 
[2025-11-27 12:53:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:53:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:53:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:53:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:53:19] 
[2025-11-27 12:53:19] 2025-11-27 11:52:43,863 | INFO     | ***************************************
[2025-11-27 12:53:19] 2025-11-27 11:52:44,367 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-27 12:53:19] 2025-11-27 11:52:44,465 | INFO     | sufficient remaining disk space (495652438016 B)
[2025-11-27 12:53:19] 2025-11-27 11:52:44,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:53:19] 2025-11-27 11:52:44,466 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:53:19] 2025-11-27 11:52:44,466 | INFO     | update_server=False
[2025-11-27 12:53:19] 2025-11-27 11:52:44,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:53:19] 2025-11-27 11:52:44,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:53:19] 2025-11-27 11:52:44,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:53:19] 2025-11-27 11:52:44,598 | INFO     | all data control threads have been joined
[2025-11-27 12:53:19] 2025-11-27 11:52:44,646 | INFO     | all job control threads have been joined
[2025-11-27 12:53:19] 2025-11-27 11:52:44,708 | INFO     | all payload control threads have been joined
[2025-11-27 12:53:19] 2025-11-27 11:52:45,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:53:19] 2025-11-27 11:52:45,161 | INFO     | aborting loop
[2025-11-27 12:53:19] 2025-11-27 11:52:45,472 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:45,567 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:45,605 | INFO     | [data] control thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:45,653 | INFO     | [job] control thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:45,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:53:19] 2025-11-27 11:52:45,715 | INFO     | [payload] control thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:45,912 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:45,987 | INFO     | [job] validate thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,167 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,276 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,337 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,480 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,705 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,741 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,814 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:46,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:48,476 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:53:19] 2025-11-27 11:52:54,755 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:53:19] 2025-11-27 11:52:56,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633591072576)>', '<ExcThread(monitor, started 139632943560448)>']
[2025-11-27 12:53:19] 2025-11-27 11:53:01,157 | INFO     | all workflow threads have been joined
[2025-11-27 12:53:19] 2025-11-27 11:53:01,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:53:19] 2025-11-27 11:53:01,158 | INFO     | traces error code: 0
[2025-11-27 12:53:19] 2025-11-27 11:53:01,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:53:19] 2025-11-27 11:53:14,163 | INFO     | PID=15993 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 12:53:19] 2025-11-27 11:53:14,163 | INFO     | .. there are 9 such processes running
[2025-11-27 12:53:19] 2025-11-27 11:53:14,164 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:53:19] 2025-11-27 11:53:14,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:53:19] 2025-11-27 11:53:14,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:53:19] 2025-11-27 11:53:14,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:53:19] 2025-11-27 11:53:14,164 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 12:53:19] 2025-11-27 11:53:14,164 | INFO     | [monitor] control thread has ended
[2025-11-27 12:53:19] 2025-11-27 11:53:14,501 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:53:19] 2025-11-27 11:53:14,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:53:19] 2025-11-27 11:53:14,728 [wrapper] pilotpid: 15993
[2025-11-27 12:53:19] 2025-11-27 11:53:14,830 [wrapper] Pilot exit status: 0
[2025-11-27 12:53:19] 2025-11-27 11:53:15,251 [wrapper] pandaids: 6895365656
[2025-11-27 12:53:19] 2025-11-27 11:53:16,182 [wrapper] cleanup supervisor_pilot 12919 15994
[2025-11-27 12:53:19] 2025-11-27 11:53:16,280 [wrapper] Test setup, not cleaning
[2025-11-27 12:53:19] 2025-11-27 11:53:16,381 [wrapper] apfmon messages muted
[2025-11-27 12:53:19] 2025-11-27 11:53:16,482 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:53:19] 2025-11-27 11:53:16,591 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:53:19]  *** Error codes and diagnostics ***
[2025-11-27 12:53:19]     "exeErrorCode": 0,
[2025-11-27 12:53:19]     "exeErrorDiag": "",
[2025-11-27 12:53:19]     "pilotErrorCode": 0,
[2025-11-27 12:53:19]     "pilotErrorDiag": "",
[2025-11-27 12:53:19]  *** Listing of results directory ***
[2025-11-27 12:53:19] total 1316132
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-27 12:53:19] -rwx------. 1 boinc boinc     36292 Nov 23 18:32 runpilot2-wrapper.sh
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc      5112 Nov 23 18:32 queuedata.json
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc       100 Nov 26 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:53:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 15:56 run_atlas
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc       105 Nov 26 15:56 job.xml
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc      6392 Nov 26 15:56 init_data.xml
[2025-11-27 12:53:19] -rw-r--r--. 2 boinc boinc 408257971 Nov 26 15:56 EVNT.47483658._000828.pool.root.1
[2025-11-27 12:53:19] -rw-r--r--. 2 boinc boinc     15847 Nov 26 15:56 start_atlas.sh
[2025-11-27 12:53:19] drwxrwx--x. 2 boinc boinc        68 Nov 26 15:56 shared
[2025-11-27 12:53:19] -rw-r--r--. 2 boinc boinc    590101 Nov 26 15:56 input.tar.gz
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc         0 Nov 26 15:56 boinc_lockfile
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc      2785 Nov 26 15:56 pandaJob.out
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc    992360 Nov 26 16:00 agis_schedconf.cvmfs.json
[2025-11-27 12:53:19] drwx------. 5 boinc boinc      4096 Nov 26 16:00 pilot3
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc       533 Nov 27 12:32 boinc_task_state.xml
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc 910780875 Nov 27 12:49 HITS.47556137._008145.pool.root.1
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc      1027 Nov 27 12:50 memory_monitor_summary.json
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc   1516240 Nov 27 12:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc   2345404 Nov 27 12:50 log.47556137._008145.job.log.tgz.1
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc      8639 Nov 27 12:52 heartbeat.json
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc        29 Nov 27 12:52 wrapper_checkpoint.txt
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc      8192 Nov 27 12:52 boinc_mmap_file
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc        95 Nov 27 12:53 pilot_heartbeat.json
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc       890 Nov 27 12:53 pilotlog.txt
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc  10042080 Nov 27 12:53 log.47556137._008145.job.log.1
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc       353 Nov 27 12:53 output.list
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc       620 Nov 27 12:53 runtime_log
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc  12410880 Nov 27 12:53 result.tar.gz
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc      8833 Nov 27 12:53 runtime_log.err
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc       662 Nov 27 12:53 APkNDmS8Sh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmx3KKDmzSNYjm.diag
[2025-11-27 12:53:19] -rw-r--r--. 1 boinc boinc     21477 Nov 27 12:53 stderr.txt
[2025-11-27 12:53:19] HITS file was successfully produced:
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc 910780875 Nov 27 12:49 shared/HITS.pool.root.1
[2025-11-27 12:53:19]  *** Contents of shared directory: ***
[2025-11-27 12:53:19] total 1300844
[2025-11-27 12:53:19] -rw-r--r--. 2 boinc boinc 408257971 Nov 26 15:56 ATLAS.root_0
[2025-11-27 12:53:19] -rw-r--r--. 2 boinc boinc     15847 Nov 26 15:56 start_atlas.sh
[2025-11-27 12:53:19] -rw-r--r--. 2 boinc boinc    590101 Nov 26 15:56 input.tar.gz
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc 910780875 Nov 27 12:49 HITS.pool.root.1
[2025-11-27 12:53:19] -rw-------. 1 boinc boinc  12410880 Nov 27 12:53 result.tar.gz
12:53:21 (12161): run_atlas exited; CPU time 282211.101593
12:53:21 (12161): called boinc_finish(0)

</stderr_txt>
]]>

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