Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:17:32 (25411): wrapper (7.7.26015): starting
21:17:32 (25411): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:17:32] Arguments: --nthreads 8
[2025-11-26 21:17:32] Threads: 8
[2025-11-26 21:17:32] Checking for CVMFS
[2025-11-26 21:17:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:17:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:17:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:17:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:17:35] 2.11.2.0 2048 172645 136452 153334 0 59 16292787 25165824 1288 130560 10 57696874 99.875 31645256 2203 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 21:17:35] CVMFS is ok
[2025-11-26 21:17:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:17:35] Checking for apptainer binary...
[2025-11-26 21:17:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:17:35] Running /usr/bin/apptainer --version
[2025-11-26 21:17:35] apptainer version 1.3.2-1.el7
[2025-11-26 21:17:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:17:40] cg-vwn398.simple-grid.lan
[2025-11-26 21:17:40] apptainer works
[2025-11-26 21:17:40] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:17:40] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:17:40] Starting ATLAS job with PandaID=6893841654
[2025-11-26 21:17:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:22:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:22:43] 2025-11-27 19:21:43,825 | INFO     | time since job start (82833s) is within the limit (172800.0s)
[2025-11-27 20:22:43] 2025-11-27 19:21:44,728 | INFO     | monitor loop #5597: job 0:6893841654 is in state 'finished'
[2025-11-27 20:22:43] 2025-11-27 19:21:44,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:22:43] 2025-11-27 19:21:45,023 | INFO     | PID=29187 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 20:22:43] 2025-11-27 19:21:45,023 | INFO     | .. there are 9 such processes running
[2025-11-27 20:22:43] 2025-11-27 19:21:46,024 | INFO     | time since job start (82836s) is within the limit (172800.0s)
[2025-11-27 20:22:43] 2025-11-27 19:21:47,233 | INFO     | monitor loop #5598: job 0:6893841654 is in state 'finished'
[2025-11-27 20:22:43] 2025-11-27 19:21:47,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:22:43] 2025-11-27 19:21:48,034 | INFO     | time since job start (82838s) is within the limit (172800.0s)
[2025-11-27 20:22:43] 2025-11-27 19:21:49,737 | INFO     | monitor loop #5599: job 0:6893841654 is in state 'finished'
[2025-11-27 20:22:43] 2025-11-27 19:21:49,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:22:43] 2025-11-27 19:21:50,041 | INFO     | time since job start (82840s) is within the limit (172800.0s)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,048 | INFO     | time since job start (82842s) is within the limit (172800.0s)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,058 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:22:43] 2025-11-27 19:21:52,060 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 20:22:43] 2025-11-27 19:21:52,063 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6893841654/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,063 | INFO     | extracted standard info from prmon json
[2025-11-27 20:22:43] 2025-11-27 19:21:52,064 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:22:43] 2025-11-27 19:21:52,064 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:22:43] 2025-11-27 19:21:52,087 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:22:43] 2025-11-27 19:21:52,089 | INFO     | sum of square deviations: 759534292282.1659
[2025-11-27 20:22:43] 2025-11-27 19:21:52,144 | INFO     | sum of deviations: 3081913047182.9297
[2025-11-27 20:22:43] 2025-11-27 19:21:52,144 | INFO     | mean x: 1764230098.5712166
[2025-11-27 20:22:43] 2025-11-27 19:21:52,144 | INFO     | mean y: 2848517.729970326
[2025-11-27 20:22:43] 2025-11-27 19:21:52,144 | INFO     | intersect: -7155753554.97216
[2025-11-27 20:22:43] 2025-11-27 19:21:52,146 | INFO     | chi2: 19.710534231982226
[2025-11-27 20:22:43] 2025-11-27 19:21:52,148 | INFO     | sum of square deviations: 751114239931.4044
[2025-11-27 20:22:43] 2025-11-27 19:21:52,208 | INFO     | sum of deviations: 3540121213566.5015
[2025-11-27 20:22:43] 2025-11-27 19:21:52,208 | INFO     | mean x: 1764229946.0752048
[2025-11-27 20:22:43] 2025-11-27 19:21:52,208 | INFO     | mean y: 2856814.7870439314
[2025-11-27 20:22:43] 2025-11-27 19:21:52,209 | INFO     | intersect: -8312240311.158134
[2025-11-27 20:22:43] 2025-11-27 19:21:52,210 | INFO     | chi2: 16.383037043172212
[2025-11-27 20:22:43] 2025-11-27 19:21:52,210 | INFO     | current chi2=16.383037043172212 (change=16.881821414108764 %)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,210 | INFO     | right removable region: 1342
[2025-11-27 20:22:43] 2025-11-27 19:21:52,212 | INFO     | sum of square deviations: 751113359091.4038
[2025-11-27 20:22:43] 2025-11-27 19:21:52,250 | INFO     | monitor loop #5600: job 0:6893841654 is in state 'finished'
[2025-11-27 20:22:43] 2025-11-27 19:21:52,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,274 | INFO     | sum of deviations: 2528500420562.8213
[2025-11-27 20:22:43] 2025-11-27 19:21:52,274 | INFO     | mean x: 1764230251.0752048
[2025-11-27 20:22:43] 2025-11-27 19:21:52,274 | INFO     | mean y: 2858539.189873418
[2025-11-27 20:22:43] 2025-11-27 19:21:52,275 | INFO     | intersect: -5936134394.192983
[2025-11-27 20:22:43] 2025-11-27 19:21:52,276 | INFO     | chi2: 15.239895977963911
[2025-11-27 20:22:43] 2025-11-27 19:21:52,276 | INFO     | current chi2=15.239895977963911 (change=22.681466678687364 %)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,276 | INFO     | left removable region: 10
[2025-11-27 20:22:43] 2025-11-27 19:21:52,278 | INFO     | sum of square deviations: 732807916963.5835
[2025-11-27 20:22:43] 2025-11-27 19:21:52,348 | INFO     | sum of deviations: 2603112494803.6953
[2025-11-27 20:22:43] 2025-11-27 19:21:52,348 | INFO     | mean x: 1764230220.584084
[2025-11-27 20:22:43] 2025-11-27 19:21:52,348 | INFO     | mean y: 2877730.7214714712
[2025-11-27 20:22:43] 2025-11-27 19:21:52,348 | INFO     | intersect: -6264098409.413393
[2025-11-27 20:22:43] 2025-11-27 19:21:52,350 | INFO     | chi2: 7.707526831544109
[2025-11-27 20:22:43] 2025-11-27 19:21:52,350 | INFO     | current memory leak: 3.55 B/s (using 1332 data points, chi2=7.71)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,351 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,351 | INFO     | ..............................
[2025-11-27 20:22:43] 2025-11-27 19:21:52,351 | INFO     | . Timing measurements:
[2025-11-27 20:22:43] 2025-11-27 19:21:52,351 | INFO     | . get job = 0 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | . initial setup = 5 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | . payload setup = 182 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | . stage-in = 0 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | . payload execution = 82342 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | . stage-out = 4 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | . log creation = 1 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,352 | INFO     | ..............................
[2025-11-27 20:22:43] 2025-11-27 19:21:52,480 | INFO     | 
[2025-11-27 20:22:43] 2025-11-27 19:21:52,480 | INFO     | job summary report
[2025-11-27 20:22:43] 2025-11-27 19:21:52,480 | INFO     | --------------------------------------------------
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | PanDA job id: 6893841654
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | task id: 47523449
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | errors: (none)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | pilot state: finished 
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | transexitcode: 0
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | exeerrorcode: 0
[2025-11-27 20:22:43] 2025-11-27 19:21:52,481 | INFO     | exeerrordiag: 
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | exitcode: 0
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | exitmsg: OK
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | cpuconsumptiontime: 311874 s
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | nevents: 1000
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | neventsw: 0
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | pid: 3336
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | pgrp: 3336
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | corecount: 8
[2025-11-27 20:22:43] 2025-11-27 19:21:52,482 | INFO     | event service: False
[2025-11-27 20:22:43] 2025-11-27 19:21:52,483 | INFO     | sizes: {0: 2284089, 1: 2284344, 2: 2284344, 12: 2284372, 23: 2284400, 34: 2284428, 45: 2284584, 55: 2284612, 66: 2284640, 77: 2284668, 88: 2284724, 99: 2285294, 10
[2025-11-27 20:22:43] 2025-11-27 19:21:52,483 | INFO     | --------------------------------------------------
[2025-11-27 20:22:43] 2025-11-27 19:21:52,483 | INFO     | 
[2025-11-27 20:22:43] 2025-11-27 19:21:52,483 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-27 20:22:43] 2025-11-27 19:21:52,974 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,974 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,974 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,974 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,975 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,976 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,976 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:22:43] 2025-11-27 19:21:52,976 | INFO     | job 6893841654 has completed (purged errors)
[2025-11-27 20:22:43] 2025-11-27 19:21:52,976 | INFO     | overall cleanup function is called
[2025-11-27 20:22:43] 2025-11-27 19:21:53,991 | INFO     | --- collectZombieJob: --- 10, [3336]
[2025-11-27 20:22:43] 2025-11-27 19:21:53,991 | INFO     | zombie collector waiting for pid 3336
[2025-11-27 20:22:43] 2025-11-27 19:21:53,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:22:43] 2025-11-27 19:21:53,991 | INFO     | collected zombie processes
[2025-11-27 20:22:43] 2025-11-27 19:21:53,992 | INFO     | will attempt to kill all subprocesses of pid=3336
[2025-11-27 20:22:43] 2025-11-27 19:21:54,098 | INFO     | process IDs to be killed: [3336] (in reverse order)
[2025-11-27 20:22:43] 2025-11-27 19:21:54,858 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:22:43] 2025-11-27 19:21:54,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:22:43] 2025-11-27 19:21:54,861 | INFO     | did not find any defunct processes belonging to 3336
[2025-11-27 20:22:43] 2025-11-27 19:21:54,868 | INFO     | did not find any defunct processes belonging to 3336
[2025-11-27 20:22:43] 2025-11-27 19:21:54,924 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:22:43] 2025-11-27 19:21:54,925 | INFO     | ready for new job
[2025-11-27 20:22:43] 2025-11-27 19:21:54,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:22:43] 2025-11-27 19:21:54,930 | INFO     | ***************************************
[2025-11-27 20:22:43] 2025-11-27 19:21:54,930 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:22:43] 2025-11-27 19:21:54,930 | INFO     | ***************************************
[2025-11-27 20:22:43] 2025-11-27 19:21:54,930 | INFO     | 
[2025-11-27 20:22:43] 2025-11-27 19:21:54,931 | INFO     | pilot is running in a VM
[2025-11-27 20:22:43] 2025-11-27 19:21:54,931 | INFO     | architecture information:
[2025-11-27 20:22:43] 2025-11-27 19:21:54,939 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:22:43] 2025-11-27 19:21:55,224 | INFO     | cat /etc/os-release:
[2025-11-27 20:22:43] NAME="CentOS Linux"
[2025-11-27 20:22:43] VERSION="7 (Core)"
[2025-11-27 20:22:43] ID="centos"
[2025-11-27 20:22:43] ID_LIKE="rhel fedora"
[2025-11-27 20:22:43] VERSION_ID="7"
[2025-11-27 20:22:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:22:43] ANSI_COLOR="0;31"
[2025-11-27 20:22:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:22:43] HOME_URL="https://www.centos.org/"
[2025-11-27 20:22:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:22:43] 
[2025-11-27 20:22:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:22:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:22:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:22:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:22:43] 
[2025-11-27 20:22:43] 2025-11-27 19:21:55,224 | INFO     | ***************************************
[2025-11-27 20:22:43] 2025-11-27 19:21:55,727 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-27 20:22:43] 2025-11-27 19:21:55,884 | INFO     | sufficient remaining disk space (495696478208 B)
[2025-11-27 20:22:43] 2025-11-27 19:21:55,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:22:43] 2025-11-27 19:21:55,884 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:22:43] 2025-11-27 19:21:55,884 | INFO     | update_server=False
[2025-11-27 20:22:43] 2025-11-27 19:21:55,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:22:43] 2025-11-27 19:21:55,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:22:43] 2025-11-27 19:21:55,885 | INFO     | aborting loop
[2025-11-27 20:22:43] 2025-11-27 19:21:56,294 | INFO     | all job control threads have been joined
[2025-11-27 20:22:43] 2025-11-27 19:21:56,668 | INFO     | all data control threads have been joined
[2025-11-27 20:22:43] 2025-11-27 19:21:56,890 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:56,891 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,013 | INFO     | all payload control threads have been joined
[2025-11-27 20:22:43] 2025-11-27 19:21:57,025 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,044 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,156 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,300 | INFO     | [job] control thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,345 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:22:43] 2025-11-27 19:21:57,423 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:22:43] 2025-11-27 19:21:57,480 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:22:43] 2025-11-27 19:21:57,650 | INFO     | [job] validate thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,673 | INFO     | [data] control thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:57,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:58,019 | INFO     | [payload] control thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:58,496 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:21:59,381 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:22:01,436 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:22:43] 2025-11-27 19:22:11,562 [wrapper] supervise_pilot (15 min periods counter: 93)
[2025-11-27 20:22:43] 2025-11-27 19:22:25,241 | INFO     | PID=29187 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 20:22:43] 2025-11-27 19:22:25,241 | INFO     | .. there are 9 such processes running
[2025-11-27 20:22:43] 2025-11-27 19:22:25,242 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:22:43] 2025-11-27 19:22:25,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:22:43] 2025-11-27 19:22:25,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:22:43] 2025-11-27 19:22:33,393 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:22:43] 2025-11-27 19:22:34,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237600565056)>', '<ExcThread(monitor, started 140237141415680)>']
[2025-11-27 20:22:43] 2025-11-27 19:22:34,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:22:43] 2025-11-27 19:22:34,297 | INFO     | [monitor] control thread has ended
[2025-11-27 20:22:43] 2025-11-27 19:22:39,135 | INFO     | all workflow threads have been joined
[2025-11-27 20:22:43] 2025-11-27 19:22:39,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:22:43] 2025-11-27 19:22:39,136 | INFO     | traces error code: 0
[2025-11-27 20:22:43] 2025-11-27 19:22:39,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:22:43] 2025-11-27 19:22:39,481 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:22:43] 2025-11-27 19:22:39,602 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:22:43] 2025-11-27 19:22:39,694 [wrapper] pilotpid: 29187
[2025-11-27 20:22:43] 2025-11-27 19:22:39,786 [wrapper] Pilot exit status: 0
[2025-11-27 20:22:43] 2025-11-27 19:22:40,218 [wrapper] pandaids: 6893841654
[2025-11-27 20:22:43] 2025-11-27 19:22:41,028 [wrapper] cleanup supervisor_pilot  8314 29188
[2025-11-27 20:22:43] 2025-11-27 19:22:41,125 [wrapper] Test setup, not cleaning
[2025-11-27 20:22:43] 2025-11-27 19:22:41,222 [wrapper] apfmon messages muted
[2025-11-27 20:22:43] 2025-11-27 19:22:41,274 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:22:43] 2025-11-27 19:22:41,330 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:22:43]  *** Error codes and diagnostics ***
[2025-11-27 20:22:43]     "exeErrorCode": 0,
[2025-11-27 20:22:43]     "exeErrorDiag": "",
[2025-11-27 20:22:43]     "pilotErrorCode": 0,
[2025-11-27 20:22:43]     "pilotErrorDiag": "",
[2025-11-27 20:22:43]  *** Listing of results directory ***
[2025-11-27 20:22:43] total 1335516
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 20:22:43] -rwx------. 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc       100 Nov 26 21:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:22:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 21:17 run_atlas
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc       105 Nov 26 21:17 job.xml
[2025-11-27 20:22:43] -rw-r--r--. 2 boinc boinc 411556241 Nov 26 21:17 EVNT.47493127._000186.pool.root.1
[2025-11-27 20:22:43] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:17 start_atlas.sh
[2025-11-27 20:22:43] drwxrwx--x. 2 boinc boinc        68 Nov 26 21:17 shared
[2025-11-27 20:22:43] -rw-r--r--. 2 boinc boinc    590101 Nov 26 21:17 input.tar.gz
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc      6392 Nov 26 21:17 init_data.xml
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc         0 Nov 26 21:17 boinc_lockfile
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc      2786 Nov 26 21:17 pandaJob.out
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc    991538 Nov 26 21:21 agis_schedconf.cvmfs.json
[2025-11-27 20:22:43] drwx------. 5 boinc boinc      4096 Nov 26 21:21 pilot3
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc       533 Nov 27 20:01 boinc_task_state.xml
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc 925169146 Nov 27 20:18 HITS.47523449._001859.pool.root.1
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc      1028 Nov 27 20:19 memory_monitor_summary.json
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc   1516240 Nov 27 20:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc   2437077 Nov 27 20:20 log.47523449._001859.job.log.tgz.1
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc      8632 Nov 27 20:21 heartbeat.json
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc        95 Nov 27 20:22 pilot_heartbeat.json
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc      8192 Nov 27 20:22 boinc_mmap_file
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc        29 Nov 27 20:22 wrapper_checkpoint.txt
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc      4885 Nov 27 20:22 pilotlog.txt
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc  11032399 Nov 27 20:22 log.47523449._001859.job.log.1
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc       353 Nov 27 20:22 output.list
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc       620 Nov 27 20:22 runtime_log
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc  13486080 Nov 27 20:22 result.tar.gz
[2025-11-27 20:22:43] -rw-------. 1 boinc boinc       662 Nov 27 20:22 z2zLDmqxGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNQGKDmt7oXtn.diag
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc      8833 Nov 27 20:22 runtime_log.err
[2025-11-27 20:22:43] -rw-r--r--. 1 boinc boinc     21420 Nov 27 20:22 stderr.txt
[2025-11-27 20:22:44] HITS file was successfully produced:
[2025-11-27 20:22:44] -rw-------. 1 boinc boinc 925169146 Nov 27 20:18 shared/HITS.pool.root.1
[2025-11-27 20:22:44]  *** Contents of shared directory: ***
[2025-11-27 20:22:44] total 1319168
[2025-11-27 20:22:44] -rw-r--r--. 2 boinc boinc 411556241 Nov 26 21:17 ATLAS.root_0
[2025-11-27 20:22:44] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:17 start_atlas.sh
[2025-11-27 20:22:44] -rw-r--r--. 2 boinc boinc    590101 Nov 26 21:17 input.tar.gz
[2025-11-27 20:22:44] -rw-------. 1 boinc boinc 925169146 Nov 27 20:18 HITS.pool.root.1
[2025-11-27 20:22:44] -rw-------. 1 boinc boinc  13486080 Nov 27 20:22 result.tar.gz
20:22:45 (25411): run_atlas exited; CPU time 312434.226223
20:22:45 (25411): called boinc_finish(0)

</stderr_txt>
]]>

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