Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:23:07 (2082957): wrapper (7.7.26015): starting
14:23:07 (2082957): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 14:23:07] Arguments: --nthreads 3
[2025-11-24 14:23:07] Threads: 3
[2025-11-24 14:23:07] Checking for CVMFS
[2025-11-24 14:23:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:23:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:23:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:23:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:23:08] 2.9.2.0 154488 817 68784 153247 0 88 35019318 36864001 0 130560 0 5754190 99.999 26615 12454 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 14:23:08] CVMFS is ok
[2025-11-24 14:23:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:23:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:23:08] Further information can be found at the LHC@home message board.
[2025-11-24 14:23:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:23:08] Checking for apptainer binary...
[2025-11-24 14:23:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:23:08] Running /usr/bin/apptainer --version
[2025-11-24 14:23:08] apptainer version 1.4.1-1.1
[2025-11-24 14:23:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:23:08] thA335
[2025-11-24 14:23:08] apptainer works
[2025-11-24 14:23:08] Set ATHENA_PROC_NUMBER=3
[2025-11-24 14:23:08] Set ATHENA_CORE_NUMBER=3
[2025-11-24 14:23:08] Starting ATLAS job with PandaID=6895365627
[2025-11-24 14:23:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:27:26]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:27:26] 2025-11-24 13:26:38,818 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:27:26] 2025-11-24 13:26:38,818 | INFO     | update_server=False
[2025-11-24 14:27:26] 2025-11-24 13:26:38,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:27:26] 2025-11-24 13:26:38,819 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:27:26] 2025-11-24 13:26:39,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:27:26] 2025-11-24 13:26:39,041 | INFO     | aborting loop
[2025-11-24 14:27:26] 2025-11-24 13:26:39,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:27:26] 2025-11-24 13:26:39,704 | INFO     | all job control threads have been joined
[2025-11-24 14:27:26] 2025-11-24 13:26:39,824 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:39,825 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:39,839 | INFO     | all data control threads have been joined
[2025-11-24 14:27:26] 2025-11-24 13:26:39,866 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,047 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,090 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,289 | INFO     | all payload control threads have been joined
[2025-11-24 14:27:26] 2025-11-24 13:26:40,606 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,710 | INFO     | [job] control thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,791 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,845 | INFO     | [data] control thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:40,996 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:41,167 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:41,226 | INFO     | [job] validate thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:41,295 | INFO     | [payload] control thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:41,303 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:41,615 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:26:41,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:27:26] 2025-11-24 13:26:45,924 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:27:26] 2025-11-24 13:27:08,867 | INFO     | PID=2086699 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:27:26] 2025-11-24 13:27:08,867 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:27:26] 2025-11-24 13:27:08,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:27:26] 2025-11-24 13:27:08,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:27:26] 2025-11-24 13:27:19,972 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:27:26] 2025-11-24 13:27:21,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839199864640)>', '<ExcThread(monitor, started 139838338615040)>']
[2025-11-24 14:27:26] 2025-11-24 13:27:21,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:27:26] 2025-11-24 13:27:21,937 | INFO     | [monitor] control thread has ended
[2025-11-24 14:27:26] 2025-11-24 13:27:26,789 | INFO     | all workflow threads have been joined
[2025-11-24 14:27:26] 2025-11-24 13:27:26,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:27:26] 2025-11-24 13:27:26,790 | INFO     | traces error code: 0
[2025-11-24 14:27:26] 2025-11-24 13:27:26,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:27:26] 2025-11-24 13:27:26,838 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:27:26] 2025-11-24 13:27:26,841 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:27:26] 2025-11-24 13:27:26,844 [wrapper] pilotpid: 2086699
[2025-11-24 14:27:26] 2025-11-24 13:27:26,847 [wrapper] Pilot exit status: 0
[2025-11-24 14:27:26] 2025-11-24 13:27:26,854 [wrapper] pandaids: 6895365627
[2025-11-24 14:27:26] 2025-11-24 13:27:26,870 [wrapper] cleanup supervisor_pilot 2086705 2086700
[2025-11-24 14:27:26] 2025-11-24 13:27:26,873 [wrapper] Test setup, not cleaning
[2025-11-24 14:27:26] 2025-11-24 13:27:26,876 [wrapper] apfmon messages muted
[2025-11-24 14:27:26] 2025-11-24 13:27:26,878 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:27:26] 2025-11-24 13:27:26,881 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:27:26]  *** Error codes and diagnostics ***
[2025-11-24 14:27:26]     "exeErrorCode": 65,
[2025-11-24 14:27:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 14:27:26]     "pilotErrorCode": 1305,
[2025-11-24 14:27:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 14:27:26]  *** Listing of results directory ***
[2025-11-24 14:27:26] total 404256
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-24 14:27:26] -rwx------ 1 boinc boinc     36292 Nov 23 18:27 runpilot2-wrapper.sh
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc      5112 Nov 23 18:27 queuedata.json
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc       100 Nov 24 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:27:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 14:23 run_atlas
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc       105 Nov 24 14:23 job.xml
[2025-11-24 14:27:26] -rw-r--r-- 2 boinc boinc 409765075 Nov 24 14:23 EVNT.47483658._000825.pool.root.1
[2025-11-24 14:27:26] drwxrwx--x 2 boinc boinc      4096 Nov 24 14:23 shared
[2025-11-24 14:27:26] -rw-r--r-- 2 boinc boinc    590095 Nov 24 14:23 input.tar.gz
[2025-11-24 14:27:26] -rw-r--r-- 2 boinc boinc     15847 Nov 24 14:23 start_atlas.sh
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc         0 Nov 24 14:23 boinc_setup_complete
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc      6195 Nov 24 14:23 init_data.xml
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc         0 Nov 24 14:23 boinc_lockfile
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc      2785 Nov 24 14:23 pandaJob.out
[2025-11-24 14:27:26] -rw------- 1 boinc boinc    988280 Nov 24 14:23 agis_schedconf.cvmfs.json
[2025-11-24 14:27:26] -rw------- 1 boinc boinc   1516227 Nov 24 14:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:27:26] drwx------ 5 boinc boinc      4096 Nov 24 14:23 pilot3
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc       523 Nov 24 14:24 boinc_task_state.xml
[2025-11-24 14:27:26] -rw------- 1 boinc boinc       953 Nov 24 14:24 memory_monitor_summary.json
[2025-11-24 14:27:26] -rw------- 1 boinc boinc     55965 Nov 24 14:24 log.47556137._008116.job.log.tgz.1
[2025-11-24 14:27:26] -rw------- 1 boinc boinc        95 Nov 24 14:26 pilot_heartbeat.json
[2025-11-24 14:27:26] -rw------- 1 boinc boinc      8402 Nov 24 14:26 heartbeat.json
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc      8192 Nov 24 14:27 boinc_mmap_file
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc        23 Nov 24 14:27 wrapper_checkpoint.txt
[2025-11-24 14:27:26] -rw------- 1 boinc boinc      4752 Nov 24 14:27 pilotlog.txt
[2025-11-24 14:27:26] -rw------- 1 boinc boinc     93764 Nov 24 14:27 log.47556137._008116.job.log.1
[2025-11-24 14:27:26] -rw------- 1 boinc boinc       186 Nov 24 14:27 output.list
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc       620 Nov 24 14:27 runtime_log
[2025-11-24 14:27:26] -rw------- 1 boinc boinc    174080 Nov 24 14:27 result.tar.gz
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc      8744 Nov 24 14:27 runtime_log.err
[2025-11-24 14:27:26] -rw------- 1 boinc boinc       649 Nov 24 14:27 pE4LDmh2Sh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5eIKDmmucyem.diag
[2025-11-24 14:27:26] -rw-r--r-- 1 boinc boinc      7892 Nov 24 14:27 stderr.txt
[2025-11-24 14:27:26] No HITS result produced
[2025-11-24 14:27:26]  *** Contents of shared directory: ***
[2025-11-24 14:27:26] total 400936
[2025-11-24 14:27:26] -rw-r--r-- 2 boinc boinc 409765075 Nov 24 14:23 ATLAS.root_0
[2025-11-24 14:27:26] -rw-r--r-- 2 boinc boinc    590095 Nov 24 14:23 input.tar.gz
[2025-11-24 14:27:26] -rw-r--r-- 2 boinc boinc     15847 Nov 24 14:23 start_atlas.sh
[2025-11-24 14:27:26] -rw------- 1 boinc boinc    174080 Nov 24 14:27 result.tar.gz
14:27:28 (2082957): run_atlas exited; CPU time 32.284402
14:27:28 (2082957): called boinc_finish(0)

</stderr_txt>
]]>

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