Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:40:41 (3961076): wrapper (7.7.26015): starting
18:40:41 (3961076): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 18:40:41] Arguments: --nthreads 8
[2025-11-24 18:40:41] Threads: 8
[2025-11-24 18:40:41] Checking for CVMFS
[2025-11-24 18:40:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 18:40:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 18:40:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 18:40:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 18:40:42] 2.13.3.0 9955 27797 304324 153263 1 194 31348778 32935936 28117 16776704 0 163815794 99.792 88460347 33163 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 18:40:42] CVMFS is ok
[2025-11-24 18:40:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 18:40:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 18:40:42] Further information can be found at the LHC@home message board.
[2025-11-24 18:40:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 18:40:42] Checking for apptainer binary...
[2025-11-24 18:40:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 18:40:42] Running /usr/bin/apptainer --version
[2025-11-24 18:40:42] apptainer version 1.4.4-1.el9
[2025-11-24 18:40:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:40:42] c-5-1.aglt2.org
[2025-11-24 18:40:42] apptainer works
[2025-11-24 18:40:42] Set ATHENA_PROC_NUMBER=8
[2025-11-24 18:40:42] Set ATHENA_CORE_NUMBER=8
[2025-11-24 18:40:42] Starting ATLAS job with PandaID=6895346887
[2025-11-24 18:40:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:05:50]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:05:50] 2025-11-26 00:05:15,378 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0371750000004
[2025-11-25 19:05:50] 2025-11-26 00:05:15,389 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895346887/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,390 | INFO     | extracted standard info from prmon json
[2025-11-25 19:05:50] 2025-11-26 00:05:15,390 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:05:50] 2025-11-26 00:05:15,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:05:50] 2025-11-26 00:05:15,420 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:05:50] 2025-11-26 00:05:15,422 | INFO     | sum of square deviations: 925911115857.5315
[2025-11-25 19:05:50] 2025-11-26 00:05:15,539 | INFO     | sum of deviations: 4510574537634.574
[2025-11-25 19:05:50] 2025-11-26 00:05:15,540 | INFO     | mean x: 1764071589.4819446
[2025-11-25 19:05:50] 2025-11-26 00:05:15,540 | INFO     | mean y: 2935413.8493055557
[2025-11-25 19:05:50] 2025-11-26 00:05:15,540 | INFO     | intersect: -8590736546.458101
[2025-11-25 19:05:50] 2025-11-26 00:05:15,542 | INFO     | chi2: 8.955628533362283
[2025-11-25 19:05:50] 2025-11-26 00:05:15,544 | INFO     | sum of square deviations: 916300166912.6934
[2025-11-25 19:05:50] 2025-11-26 00:05:15,600 | INFO     | sum of deviations: 4999498595119.136
[2025-11-25 19:05:50] 2025-11-26 00:05:15,600 | INFO     | mean x: 1764071436.9853659
[2025-11-25 19:05:50] 2025-11-26 00:05:15,600 | INFO     | mean y: 2943170.8641114985
[2025-11-25 19:05:50] 2025-11-26 00:05:15,600 | INFO     | intersect: -9622148026.72209
[2025-11-25 19:05:50] 2025-11-26 00:05:15,602 | INFO     | chi2: 5.803415745602697
[2025-11-25 19:05:50] 2025-11-26 00:05:15,603 | INFO     | current chi2=5.803415745602697 (change=35.19811899317496 %)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,605 | INFO     | sum of square deviations: 906755963405.3207
[2025-11-25 19:05:50] 2025-11-26 00:05:15,643 | INFO     | sum of deviations: 5486834316410.757
[2025-11-25 19:05:50] 2025-11-26 00:05:15,643 | INFO     | mean x: 1764071284.4888113
[2025-11-25 19:05:50] 2025-11-26 00:05:15,644 | INFO     | mean y: 2950954.4853146854
[2025-11-25 19:05:50] 2025-11-26 00:05:15,644 | INFO     | intersect: -10671549408.300186
[2025-11-25 19:05:50] 2025-11-26 00:05:15,645 | INFO     | chi2: 2.602597179288464
[2025-11-25 19:05:50] 2025-11-26 00:05:15,645 | INFO     | current chi2=2.602597179288464 (change=55.154045593571745 %)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,647 | INFO     | sum of square deviations: 897278011451.8625
[2025-11-25 19:05:50] 2025-11-26 00:05:15,689 | INFO     | sum of deviations: 5565544657901.61
[2025-11-25 19:05:50] 2025-11-26 00:05:15,690 | INFO     | mean x: 1764071131.9901755
[2025-11-25 19:05:50] 2025-11-26 00:05:15,690 | INFO     | mean y: 2952218.6154385963
[2025-11-25 19:05:50] 2025-11-26 00:05:15,690 | INFO     | intersect: -10939048520.843325
[2025-11-25 19:05:50] 2025-11-26 00:05:15,692 | INFO     | chi2: 2.3570571325656107
[2025-11-25 19:05:50] 2025-11-26 00:05:15,692 | INFO     | current chi2=2.3570571325656107 (change=9.434423762419605 %)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,692 | INFO     | right removable region: 1424
[2025-11-25 19:05:50] 2025-11-26 00:05:15,694 | INFO     | sum of square deviations: 916299391969.6622
[2025-11-25 19:05:50] 2025-11-26 00:05:15,780 | INFO     | sum of deviations: 4118252300694.0674
[2025-11-25 19:05:50] 2025-11-26 00:05:15,780 | INFO     | mean x: 1764071741.984669
[2025-11-25 19:05:50] 2025-11-26 00:05:15,780 | INFO     | mean y: 2941633.5024390244
[2025-11-25 19:05:50] 2025-11-26 00:05:15,780 | INFO     | intersect: -7925572314.762068
[2025-11-25 19:05:50] 2025-11-26 00:05:15,782 | INFO     | chi2: 6.929386016808627
[2025-11-25 19:05:50] 2025-11-26 00:05:15,782 | INFO     | current chi2=6.929386016808627 (change=22.625352413907315 %)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,782 | INFO     | left removable region: 10
[2025-11-25 19:05:50] 2025-11-26 00:05:15,784 | INFO     | sum of square deviations: 876658694487.4443
[2025-11-25 19:05:50] 2025-11-26 00:05:15,937 | INFO     | sum of deviations: 5063956067719.9
[2025-11-25 19:05:50] 2025-11-26 00:05:15,938 | INFO     | mean x: 1764071406.4936352
[2025-11-25 19:05:50] 2025-11-26 00:05:15,938 | INFO     | mean y: 2960097.266619519
[2025-11-25 19:05:50] 2025-11-26 00:05:15,938 | INFO     | intersect: -10187071849.005905
[2025-11-25 19:05:50] 2025-11-26 00:05:15,944 | INFO     | chi2: 0.27179585289336516
[2025-11-25 19:05:50] 2025-11-26 00:05:15,945 | INFO     | current memory leak: 5.78 B/s (using 1414 data points, chi2=0.27)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,946 | INFO     | could have reported an average CPU frequency of 2600 MHz (51 samples)
[2025-11-25 19:05:50] 2025-11-26 00:05:15,946 | INFO     | ..............................
[2025-11-25 19:05:50] 2025-11-26 00:05:15,946 | INFO     | . Timing measurements:
[2025-11-25 19:05:50] 2025-11-26 00:05:15,946 | INFO     | . get job = 0 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | . initial setup = 3 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | . payload setup = 11 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | . stage-in = 0 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | . payload execution = 87795 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | . stage-out = 5 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | . log creation = 1 s
[2025-11-25 19:05:50] 2025-11-26 00:05:15,951 | INFO     | ..............................
[2025-11-25 19:05:50] 2025-11-26 00:05:16,323 | INFO     | 
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | job summary report
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | --------------------------------------------------
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | PanDA job id: 6895346887
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | task id: 47556137
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | errors: (none)
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:05:50] 2025-11-26 00:05:16,331 | INFO     | pilot state: finished 
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | transexitcode: 0
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | exeerrorcode: 0
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | exeerrordiag: 
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | exitcode: 0
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | exitmsg: OK
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | cpuconsumptiontime: 300572 s
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | nevents: 1000
[2025-11-25 19:05:50] 2025-11-26 00:05:16,332 | INFO     | neventsw: 0
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | pid: 3972981
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | pgrp: 3972981
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | corecount: 8
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | event service: False
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | sizes: {0: 2284258, 1: 2284286, 9: 2284548, 12: 2284576, 87810: 2351791, 87817: 2360790, 87819: 2360974, 87837: 2361220}
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | --------------------------------------------------
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | 
[2025-11-25 19:05:50] 2025-11-26 00:05:16,333 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 19:05:50] 2025-11-26 00:05:16,358 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,359 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:05:50] 2025-11-26 00:05:16,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:05:50] 2025-11-26 00:05:16,363 | INFO     | job 6895346887 has completed (purged errors)
[2025-11-25 19:05:50] 2025-11-26 00:05:16,363 | INFO     | overall cleanup function is called
[2025-11-25 19:05:50] 2025-11-26 00:05:16,702 | INFO     | PID=3965775 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 19:05:50] 2025-11-26 00:05:16,702 | INFO     | .. there are 39 such processes running
[2025-11-25 19:05:50] 2025-11-26 00:05:17,391 | INFO     | --- collectZombieJob: --- 10, [3972981]
[2025-11-25 19:05:50] 2025-11-26 00:05:17,391 | INFO     | zombie collector waiting for pid 3972981
[2025-11-25 19:05:50] 2025-11-26 00:05:17,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:05:50] 2025-11-26 00:05:17,391 | INFO     | collected zombie processes
[2025-11-25 19:05:50] 2025-11-26 00:05:17,391 | INFO     | will attempt to kill all subprocesses of pid=3972981
[2025-11-25 19:05:50] 2025-11-26 00:05:17,931 | INFO     | process IDs to be killed: [3972981] (in reverse order)
[2025-11-25 19:05:50] 2025-11-26 00:05:18,085 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:05:50] 2025-11-26 00:05:18,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:05:50] 2025-11-26 00:05:18,103 | INFO     | did not find any defunct processes belonging to 3972981
[2025-11-25 19:05:50] 2025-11-26 00:05:18,113 | INFO     | did not find any defunct processes belonging to 3972981
[2025-11-25 19:05:50] 2025-11-26 00:05:18,114 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:05:50] 2025-11-26 00:05:18,115 | INFO     | ready for new job
[2025-11-25 19:05:50] 2025-11-26 00:05:18,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:05:50] 2025-11-26 00:05:18,119 | INFO     | ***************************************
[2025-11-25 19:05:50] 2025-11-26 00:05:18,120 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:05:50] 2025-11-26 00:05:18,120 | INFO     | ***************************************
[2025-11-25 19:05:50] 2025-11-26 00:05:18,120 | INFO     | 
[2025-11-25 19:05:50] 2025-11-26 00:05:18,121 | INFO     | architecture information:
[2025-11-25 19:05:50] 2025-11-26 00:05:18,122 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:05:50] 2025-11-26 00:05:18,142 | INFO     | cat /etc/os-release:
[2025-11-25 19:05:50] NAME="CentOS Linux"
[2025-11-25 19:05:50] VERSION="7 (Core)"
[2025-11-25 19:05:50] ID="centos"
[2025-11-25 19:05:50] ID_LIKE="rhel fedora"
[2025-11-25 19:05:50] VERSION_ID="7"
[2025-11-25 19:05:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:05:50] ANSI_COLOR="0;31"
[2025-11-25 19:05:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:05:50] HOME_URL="https://www.centos.org/"
[2025-11-25 19:05:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:05:50] 
[2025-11-25 19:05:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:05:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:05:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:05:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:05:50] 
[2025-11-25 19:05:50] 2025-11-26 00:05:18,142 | INFO     | ***************************************
[2025-11-25 19:05:50] 2025-11-26 00:05:18,645 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 19:05:50] 2025-11-26 00:05:18,668 | INFO     | sufficient remaining disk space (72811020288 B)
[2025-11-25 19:05:50] 2025-11-26 00:05:18,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:05:50] 2025-11-26 00:05:18,669 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:05:50] 2025-11-26 00:05:18,669 | INFO     | update_server=False
[2025-11-25 19:05:50] 2025-11-26 00:05:18,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:05:50] 2025-11-26 00:05:18,669 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:05:50] 2025-11-26 00:05:18,996 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 19:05:50] 2025-11-26 00:05:18,996 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 19:05:50] 2025-11-26 00:05:18,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:05:50] 2025-11-26 00:05:18,996 | INFO     | will abort loop
[2025-11-25 19:05:50] 2025-11-26 00:05:19,024 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:05:50] 2025-11-26 00:05:19,461 | INFO     | all data control threads have been joined
[2025-11-25 19:05:50] 2025-11-26 00:05:19,677 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:19,729 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:19,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:19,817 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:19,949 | INFO     | all job control threads have been joined
[2025-11-25 19:05:50] 2025-11-26 00:05:20,001 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,014 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,083 | INFO     | all payload control threads have been joined
[2025-11-25 19:05:50] 2025-11-26 00:05:20,315 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,330 | INFO     | [job] validate thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,409 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,473 | INFO     | [data] control thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,689 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:20,970 | INFO     | [job] control thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:21,030 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:21,089 | INFO     | [payload] control thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:21,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:05:50] 2025-11-26 00:05:22,178 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:22,683 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:05:50] 2025-11-26 00:05:34,344 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:05:50] 2025-11-26 00:05:35,766 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968430262080)>', '<ExcThread(monitor, started 139967791613696)>']
[2025-11-25 19:05:50] 2025-11-26 00:05:40,792 | INFO     | all workflow threads have been joined
[2025-11-25 19:05:50] 2025-11-26 00:05:40,792 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:05:50] 2025-11-26 00:05:40,792 | INFO     | traces error code: 0
[2025-11-25 19:05:50] 2025-11-26 00:05:40,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:05:50] 2025-11-26 00:05:49,396 | INFO     | PID=3965775 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:05:50] 2025-11-26 00:05:49,397 | INFO     | .. there are 39 such processes running
[2025-11-25 19:05:50] 2025-11-26 00:05:49,397 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:05:50] 2025-11-26 00:05:49,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:05:50] 2025-11-26 00:05:49,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:05:50] 2025-11-26 00:05:49,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:05:50] 2025-11-26 00:05:49,398 | INFO     | [monitor] control thread has ended
[2025-11-25 19:05:50] 2025-11-26 00:05:49,821 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:05:50] 2025-11-26 00:05:49,826 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:05:50] 2025-11-26 00:05:49,830 [wrapper] pilotpid: 3965775
[2025-11-25 19:05:50] 2025-11-26 00:05:49,834 [wrapper] Pilot exit status: 0
[2025-11-25 19:05:50] 2025-11-26 00:05:49,883 [wrapper] pandaids: 6895346887
[2025-11-25 19:05:50] 2025-11-26 00:05:49,999 [wrapper] cleanup supervisor_pilot  208306 3965776
[2025-11-25 19:05:50] 2025-11-26 00:05:50,029 [wrapper] Test setup, not cleaning
[2025-11-25 19:05:50] 2025-11-26 00:05:50,032 [wrapper] apfmon messages muted
[2025-11-25 19:05:50] 2025-11-26 00:05:50,036 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:05:50] 2025-11-26 00:05:50,041 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:05:50]  *** Error codes and diagnostics ***
[2025-11-25 19:05:50]     "exeErrorCode": 0,
[2025-11-25 19:05:50]     "exeErrorDiag": "",
[2025-11-25 19:05:50]     "pilotErrorCode": 0,
[2025-11-25 19:05:50]     "pilotErrorDiag": "",
[2025-11-25 19:05:50]  *** Listing of results directory ***
[2025-11-25 19:05:50] total 1330380
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:13 pilot3.tar.gz
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:16 queuedata.json
[2025-11-25 19:05:50] -rwx------. 1 boincer umatlas     36292 Nov 22 14:17 runpilot2-wrapper.sh
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas       100 Nov 24 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:05:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 18:40 run_atlas
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas       105 Nov 24 18:40 job.xml
[2025-11-25 19:05:50] -rw-r--r--. 2 boincer umatlas 409729625 Nov 24 18:40 EVNT.47483658._000466.pool.root.1
[2025-11-25 19:05:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 18:40 start_atlas.sh
[2025-11-25 19:05:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 18:40 shared
[2025-11-25 19:05:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 18:40 input.tar.gz
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas         0 Nov 24 18:40 boinc_lockfile
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 18:40 pandaJob.out
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas        57 Nov 24 18:40 setup.sh.local
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas    991801 Nov 24 18:40 agis_schedconf.cvmfs.json
[2025-11-25 19:05:50] drwx------. 5 boincer umatlas      4096 Nov 24 18:41 pilot3
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas       533 Nov 25 18:50 boinc_task_state.xml
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 19:03 init_data.xml
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas 920659439 Nov 25 19:04 HITS.47556137._004614.pool.root.1
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas      1057 Nov 25 19:04 memory_monitor_summary.json
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas   1516240 Nov 25 19:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas   2490717 Nov 25 19:04 log.47556137._004614.job.log.tgz.1
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas        95 Nov 25 19:05 pilot_heartbeat.json
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas      8609 Nov 25 19:05 heartbeat.json
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas       823 Nov 25 19:05 pilotlog.txt
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas        29 Nov 25 19:05 wrapper_checkpoint.txt
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas  11508068 Nov 25 19:05 log.47556137._004614.job.log.1
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas       353 Nov 25 19:05 output.list
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas       620 Nov 25 19:05 runtime_log
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas  14018560 Nov 25 19:05 result.tar.gz
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas       657 Nov 25 19:05 v2MKDmcH8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTEIKDm32EOBo.diag
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 19:05 runtime_log.err
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 19:05 boinc_mmap_file
[2025-11-25 19:05:50] -rw-r--r--. 1 boincer umatlas     21412 Nov 25 19:05 stderr.txt
[2025-11-25 19:05:50] HITS file was successfully produced:
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas 920659439 Nov 25 19:04 shared/HITS.pool.root.1
[2025-11-25 19:05:50]  *** Contents of shared directory: ***
[2025-11-25 19:05:50] total 1313508
[2025-11-25 19:05:50] -rw-r--r--. 2 boincer umatlas 409729625 Nov 24 18:40 ATLAS.root_0
[2025-11-25 19:05:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 18:40 start_atlas.sh
[2025-11-25 19:05:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 18:40 input.tar.gz
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas 920659439 Nov 25 19:04 HITS.pool.root.1
[2025-11-25 19:05:50] -rw-------. 1 boincer umatlas  14018560 Nov 25 19:05 result.tar.gz
19:06:12 (3961076): run_atlas exited; CPU time 303647.693851
19:06:12 (3961076): called boinc_finish(0)

</stderr_txt>
]]>

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