Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:33:25 (4022): wrapper (7.7.26015): starting
21:33:25 (4022): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:33:25] Arguments: --nthreads 8
[2025-11-26 21:33:25] Threads: 8
[2025-11-26 21:33:25] Checking for CVMFS
[2025-11-26 21:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:33:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:33:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:33:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:33:28] 2.11.2.0 31738 285690 138780 153334 2 84 18903860 25165825 1288 130560 10 122827432 99.872 79691342 2809 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 21:33:28] CVMFS is ok
[2025-11-26 21:33:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:33:28] Checking for apptainer binary...
[2025-11-26 21:33:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:33:28] Running /usr/bin/apptainer --version
[2025-11-26 21:33:28] apptainer version 1.3.2-1.el7
[2025-11-26 21:33:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:33:48] cg-vwn375.simple-grid.lan
[2025-11-26 21:33:48] apptainer works
[2025-11-26 21:33:48] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:33:48] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:33:48] Starting ATLAS job with PandaID=6895365542
[2025-11-26 21:33:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:23:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:23:09] 2025-11-27 20:21:56,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:09] 2025-11-27 20:21:57,412 | INFO     | time since job start (85466s) is within the limit (172800.0s)
[2025-11-27 21:23:09] 2025-11-27 20:21:58,666 | INFO     | PID=7814 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 21:23:09] 2025-11-27 20:21:58,666 | INFO     | .. there are 9 such processes running
[2025-11-27 21:23:09] 2025-11-27 20:21:58,734 | INFO     | monitor loop #5746: job 0:6895365542 is in state 'finished'
[2025-11-27 21:23:09] 2025-11-27 20:21:58,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:09] 2025-11-27 20:21:59,671 | INFO     | time since job start (85468s) is within the limit (172800.0s)
[2025-11-27 21:23:09] 2025-11-27 20:22:01,248 | INFO     | monitor loop #5747: job 0:6895365542 is in state 'finished'
[2025-11-27 21:23:09] 2025-11-27 20:22:01,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:09] 2025-11-27 20:22:01,688 | INFO     | time since job start (85470s) is within the limit (172800.0s)
[2025-11-27 21:23:09] 2025-11-27 20:22:03,695 | INFO     | time since job start (85472s) is within the limit (172800.0s)
[2025-11-27 21:23:09] 2025-11-27 20:22:03,754 | INFO     | monitor loop #5748: job 0:6895365542 is in state 'finished'
[2025-11-27 21:23:09] 2025-11-27 20:22:03,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,386 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:23:09] 2025-11-27 20:22:05,387 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 21:23:09] 2025-11-27 20:22:05,389 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895365542/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,390 | INFO     | extracted standard info from prmon json
[2025-11-27 21:23:09] 2025-11-27 20:22:05,390 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:23:09] 2025-11-27 20:22:05,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:23:09] 2025-11-27 20:22:05,416 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:23:09] 2025-11-27 20:22:05,418 | INFO     | sum of square deviations: 836364077305.2917
[2025-11-27 21:23:09] 2025-11-27 20:22:05,487 | INFO     | sum of deviations: 2776467580753.609
[2025-11-27 21:23:09] 2025-11-27 20:22:05,487 | INFO     | mean x: 1764232371.595546
[2025-11-27 21:23:09] 2025-11-27 20:22:05,488 | INFO     | mean y: 2839592.2586206896
[2025-11-27 21:23:09] 2025-11-27 20:22:05,488 | INFO     | intersect: -5853860997.31379
[2025-11-27 21:23:09] 2025-11-27 20:22:05,489 | INFO     | chi2: 21.284772755173137
[2025-11-27 21:23:09] 2025-11-27 20:22:05,491 | INFO     | sum of square deviations: 827384318234.2699
[2025-11-27 21:23:09] 2025-11-27 20:22:05,549 | INFO     | sum of deviations: 3242625199955.4565
[2025-11-27 21:23:09] 2025-11-27 20:22:05,549 | INFO     | mean x: 1764232219.0994954
[2025-11-27 21:23:09] 2025-11-27 20:22:05,550 | INFO     | mean y: 2847507.9531362653
[2025-11-27 21:23:09] 2025-11-27 20:22:05,550 | INFO     | intersect: -6911404703.684212
[2025-11-27 21:23:09] 2025-11-27 20:22:05,551 | INFO     | chi2: 17.985025804548197
[2025-11-27 21:23:09] 2025-11-27 20:22:05,551 | INFO     | current chi2=17.985025804548197 (change=15.502852619476315 %)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,552 | INFO     | right removable region: 1386
[2025-11-27 21:23:09] 2025-11-27 20:22:05,553 | INFO     | sum of square deviations: 827383387984.2697
[2025-11-27 21:23:09] 2025-11-27 20:22:05,609 | INFO     | sum of deviations: 2201878490261.5366
[2025-11-27 21:23:09] 2025-11-27 20:22:05,609 | INFO     | mean x: 1764232524.0994954
[2025-11-27 21:23:09] 2025-11-27 20:22:05,609 | INFO     | mean y: 2849348.4888248015
[2025-11-27 21:23:09] 2025-11-27 20:22:05,609 | INFO     | intersect: -4692223942.864654
[2025-11-27 21:23:09] 2025-11-27 20:22:05,611 | INFO     | chi2: 16.769714451244393
[2025-11-27 21:23:09] 2025-11-27 20:22:05,611 | INFO     | current chi2=16.769714451244393 (change=21.212621604481942 %)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,611 | INFO     | left removable region: 10
[2025-11-27 21:23:09] 2025-11-27 20:22:05,613 | INFO     | sum of square deviations: 807853745517.8677
[2025-11-27 21:23:09] 2025-11-27 20:22:05,669 | INFO     | sum of deviations: 2318106828575.6313
[2025-11-27 21:23:09] 2025-11-27 20:22:05,670 | INFO     | mean x: 1764232493.608285
[2025-11-27 21:23:09] 2025-11-27 20:22:05,670 | INFO     | mean y: 2867120.5763081396
[2025-11-27 21:23:09] 2025-11-27 20:22:05,670 | INFO     | intersect: -5059533608.910594
[2025-11-27 21:23:09] 2025-11-27 20:22:05,671 | INFO     | chi2: 9.790554680414703
[2025-11-27 21:23:09] 2025-11-27 20:22:05,672 | INFO     | current memory leak: 2.87 B/s (using 1376 data points, chi2=9.79)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,673 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | ..............................
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . Timing measurements:
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . get job = 0 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . initial setup = 10 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . payload setup = 135 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . stage-in = 0 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . payload execution = 85040 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . stage-out = 5 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | . log creation = 2 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,674 | INFO     | ..............................
[2025-11-27 21:23:09] 2025-11-27 20:22:05,712 | INFO     | time since job start (85474s) is within the limit (172800.0s)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,792 | INFO     | 
[2025-11-27 21:23:09] 2025-11-27 20:22:05,792 | INFO     | job summary report
[2025-11-27 21:23:09] 2025-11-27 20:22:05,792 | INFO     | --------------------------------------------------
[2025-11-27 21:23:09] 2025-11-27 20:22:05,792 | INFO     | PanDA job id: 6895365542
[2025-11-27 21:23:09] 2025-11-27 20:22:05,792 | INFO     | task id: 47556137
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | errors: (none)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | pilot state: finished 
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | transexitcode: 0
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | exeerrorcode: 0
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | exeerrordiag: 
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | exitcode: 0
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | exitmsg: OK
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | cpuconsumptiontime: 321147 s
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | nevents: 1000
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | neventsw: 0
[2025-11-27 21:23:09] 2025-11-27 20:22:05,793 | INFO     | pid: 14392
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | pgrp: 14392
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | corecount: 8
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | event service: False
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 65: 2284638, 76: 2284666, 87: 2284722, 92: 2285012, 97: 2285320, 8
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | --------------------------------------------------
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | 
[2025-11-27 21:23:09] 2025-11-27 20:22:05,794 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-27 21:23:09] 2025-11-27 20:22:05,820 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:23:09] 2025-11-27 20:22:05,823 | INFO     | job 6895365542 has completed (purged errors)
[2025-11-27 21:23:09] 2025-11-27 20:22:05,823 | INFO     | overall cleanup function is called
[2025-11-27 21:23:09] 2025-11-27 20:22:06,840 | INFO     | --- collectZombieJob: --- 10, [14392]
[2025-11-27 21:23:09] 2025-11-27 20:22:06,840 | INFO     | zombie collector waiting for pid 14392
[2025-11-27 21:23:09] 2025-11-27 20:22:06,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:23:09] 2025-11-27 20:22:06,840 | INFO     | collected zombie processes
[2025-11-27 21:23:09] 2025-11-27 20:22:06,840 | INFO     | will attempt to kill all subprocesses of pid=14392
[2025-11-27 21:23:09] 2025-11-27 20:22:06,970 | INFO     | process IDs to be killed: [14392] (in reverse order)
[2025-11-27 21:23:09] 2025-11-27 20:22:07,721 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:23:09] 2025-11-27 20:22:07,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:23:09] 2025-11-27 20:22:07,725 | INFO     | did not find any defunct processes belonging to 14392
[2025-11-27 21:23:09] 2025-11-27 20:22:07,728 | INFO     | did not find any defunct processes belonging to 14392
[2025-11-27 21:23:09] 2025-11-27 20:22:07,732 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:23:09] 2025-11-27 20:22:07,732 | INFO     | ready for new job
[2025-11-27 21:23:09] 2025-11-27 20:22:07,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:23:09] 2025-11-27 20:22:07,737 | INFO     | ***************************************
[2025-11-27 21:23:09] 2025-11-27 20:22:07,738 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:23:09] 2025-11-27 20:22:07,738 | INFO     | ***************************************
[2025-11-27 21:23:09] 2025-11-27 20:22:07,738 | INFO     | 
[2025-11-27 21:23:09] 2025-11-27 20:22:07,738 | INFO     | pilot is running in a VM
[2025-11-27 21:23:09] 2025-11-27 20:22:07,739 | INFO     | architecture information:
[2025-11-27 21:23:09] 2025-11-27 20:22:07,739 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:23:09] 2025-11-27 20:22:07,895 | INFO     | cat /etc/os-release:
[2025-11-27 21:23:09] NAME="CentOS Linux"
[2025-11-27 21:23:09] VERSION="7 (Core)"
[2025-11-27 21:23:09] ID="centos"
[2025-11-27 21:23:09] ID_LIKE="rhel fedora"
[2025-11-27 21:23:09] VERSION_ID="7"
[2025-11-27 21:23:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:23:09] ANSI_COLOR="0;31"
[2025-11-27 21:23:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:23:09] HOME_URL="https://www.centos.org/"
[2025-11-27 21:23:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:23:09] 
[2025-11-27 21:23:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:23:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:23:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:23:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:23:09] 
[2025-11-27 21:23:09] 2025-11-27 20:22:07,896 | INFO     | ***************************************
[2025-11-27 21:23:09] 2025-11-27 20:22:08,399 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-27 21:23:09] 2025-11-27 20:22:08,569 | INFO     | sufficient remaining disk space (495228813312 B)
[2025-11-27 21:23:09] 2025-11-27 20:22:08,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:23:09] 2025-11-27 20:22:08,569 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:23:09] 2025-11-27 20:22:08,569 | INFO     | update_server=False
[2025-11-27 21:23:09] 2025-11-27 20:22:08,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:23:09] 2025-11-27 20:22:08,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:23:09] 2025-11-27 20:22:08,691 | INFO     | all payload control threads have been joined
[2025-11-27 21:23:09] 2025-11-27 20:22:08,774 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 21:23:09] 2025-11-27 20:22:08,774 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 21:23:09] 2025-11-27 20:22:08,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:23:09] 2025-11-27 20:22:08,774 | INFO     | will abort loop
[2025-11-27 21:23:09] 2025-11-27 20:22:08,787 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:23:09] 2025-11-27 20:22:08,853 | INFO     | all data control threads have been joined
[2025-11-27 21:23:09] 2025-11-27 20:22:08,929 | INFO     | all job control threads have been joined
[2025-11-27 21:23:09] 2025-11-27 20:22:09,575 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,697 | INFO     | [payload] control thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,697 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,781 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,785 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,833 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,859 | INFO     | [data] control thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,891 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,932 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:09,935 | INFO     | [job] control thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:10,457 | INFO     | [job] validate thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:10,794 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:10,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:23:09] 2025-11-27 20:22:10,958 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:10,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:11,813 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:12,579 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:23:09] 2025-11-27 20:22:38,916 | INFO     | PID=7814 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 21:23:09] 2025-11-27 20:22:38,916 | INFO     | .. there are 9 such processes running
[2025-11-27 21:23:09] 2025-11-27 20:22:38,916 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:23:09] 2025-11-27 20:22:38,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:23:09] 2025-11-27 20:22:38,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:23:09] 2025-11-27 20:23:00,428 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:23:09] 2025-11-27 20:23:00,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155972679488)>', '<ExcThread(monitor, started 140155310565120)>']
[2025-11-27 21:23:09] 2025-11-27 20:23:01,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:23:09] 2025-11-27 20:23:01,048 | INFO     | [monitor] control thread has ended
[2025-11-27 21:23:09] 2025-11-27 20:23:05,804 | INFO     | all workflow threads have been joined
[2025-11-27 21:23:09] 2025-11-27 20:23:05,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:23:09] 2025-11-27 20:23:05,804 | INFO     | traces error code: 0
[2025-11-27 21:23:09] 2025-11-27 20:23:05,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:23:09] 2025-11-27 20:23:06,091 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:23:09] 2025-11-27 20:23:06,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:23:09] 2025-11-27 20:23:06,349 [wrapper] pilotpid: 7814
[2025-11-27 21:23:09] 2025-11-27 20:23:06,443 [wrapper] Pilot exit status: 0
[2025-11-27 21:23:09] 2025-11-27 20:23:06,904 [wrapper] pandaids: 6895365542
[2025-11-27 21:23:09] 2025-11-27 20:23:07,616 [wrapper] cleanup supervisor_pilot 20067 7815
[2025-11-27 21:23:09] 2025-11-27 20:23:07,714 [wrapper] Test setup, not cleaning
[2025-11-27 21:23:09] 2025-11-27 20:23:07,807 [wrapper] apfmon messages muted
[2025-11-27 21:23:09] 2025-11-27 20:23:07,887 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:23:09] 2025-11-27 20:23:07,946 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:23:09]  *** Error codes and diagnostics ***
[2025-11-27 21:23:09]     "exeErrorCode": 0,
[2025-11-27 21:23:09]     "exeErrorDiag": "",
[2025-11-27 21:23:09]     "pilotErrorCode": 0,
[2025-11-27 21:23:09]     "pilotErrorDiag": "",
[2025-11-27 21:23:09]  *** Listing of results directory ***
[2025-11-27 21:23:09] total 1337968
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-27 21:23:09] -rwx------. 1 boinc boinc     36292 Nov 23 18:27 runpilot2-wrapper.sh
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc      5112 Nov 23 18:27 queuedata.json
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc       100 Nov 26 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:23:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 21:33 run_atlas
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc       105 Nov 26 21:33 job.xml
[2025-11-27 21:23:09] -rw-r--r--. 2 boinc boinc 409933846 Nov 26 21:33 EVNT.47483658._000824.pool.root.1
[2025-11-27 21:23:09] -rw-r--r--. 2 boinc boinc    590102 Nov 26 21:33 input.tar.gz
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc      6392 Nov 26 21:33 init_data.xml
[2025-11-27 21:23:09] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:33 start_atlas.sh
[2025-11-27 21:23:09] drwxrwx--x. 2 boinc boinc        68 Nov 26 21:33 shared
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc         0 Nov 26 21:33 boinc_lockfile
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc      2785 Nov 26 21:33 pandaJob.out
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc    991538 Nov 26 21:37 agis_schedconf.cvmfs.json
[2025-11-27 21:23:09] drwx------. 5 boinc boinc      4096 Nov 26 21:37 pilot3
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc       533 Nov 27 20:54 boinc_task_state.xml
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc 928565347 Nov 27 21:19 HITS.47556137._008104.pool.root.1
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc      1026 Nov 27 21:20 memory_monitor_summary.json
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc   1516240 Nov 27 21:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc   2467516 Nov 27 21:20 log.47556137._008104.job.log.tgz.1
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc        95 Nov 27 21:22 pilot_heartbeat.json
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc      8643 Nov 27 21:22 heartbeat.json
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc        29 Nov 27 21:22 wrapper_checkpoint.txt
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc      8192 Nov 27 21:22 boinc_mmap_file
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc      5069 Nov 27 21:23 pilotlog.txt
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc  11370118 Nov 27 21:23 log.47556137._008104.job.log.1
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc       353 Nov 27 21:23 output.list
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc       620 Nov 27 21:23 runtime_log
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc  13854720 Nov 27 21:23 result.tar.gz
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc      8817 Nov 27 21:23 runtime_log.err
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc       662 Nov 27 21:23 1TqLDmh2Sh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxeIKDmPeNhBo.diag
[2025-11-27 21:23:09] -rw-r--r--. 1 boinc boinc     21493 Nov 27 21:23 stderr.txt
[2025-11-27 21:23:09] HITS file was successfully produced:
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc 928565347 Nov 27 21:19 shared/HITS.pool.root.1
[2025-11-27 21:23:09]  *** Contents of shared directory: ***
[2025-11-27 21:23:09] total 1321260
[2025-11-27 21:23:09] -rw-r--r--. 2 boinc boinc 409933846 Nov 26 21:33 ATLAS.root_0
[2025-11-27 21:23:09] -rw-r--r--. 2 boinc boinc    590102 Nov 26 21:33 input.tar.gz
[2025-11-27 21:23:09] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:33 start_atlas.sh
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc 928565347 Nov 27 21:19 HITS.pool.root.1
[2025-11-27 21:23:09] -rw-------. 1 boinc boinc  13854720 Nov 27 21:23 result.tar.gz
21:23:10 (4022): run_atlas exited; CPU time 321727.014657
21:23:10 (4022): called boinc_finish(0)

</stderr_txt>
]]>

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