Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:49:06 (6460): wrapper (7.7.26015): starting
08:49:06 (6460): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 08:49:06] Arguments: --nthreads 12
[2025-11-24 08:49:06] Threads: 12
[2025-11-24 08:49:06] Checking for CVMFS
[2025-11-24 08:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:49:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:49:06] 2.11.2.0 2947 284836 92676 153247 2 82 13453216 20275200 1 130560 1 128380546 99.971 16336016 12737 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 08:49:06] CVMFS is ok
[2025-11-24 08:49:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:49:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:49:09] Further information can be found at the LHC@home message board.
[2025-11-24 08:49:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:49:09] Checking for apptainer binary...
[2025-11-24 08:49:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:49:09] Running /usr/bin/apptainer --version
[2025-11-24 08:49:09] apptainer version 1.3.2-1.el7
[2025-11-24 08:49:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:49:10] c-205-18.aglt2.org
[2025-11-24 08:49:10] apptainer works
[2025-11-24 08:49:10] Set ATHENA_PROC_NUMBER=12
[2025-11-24 08:49:10] Set ATHENA_CORE_NUMBER=12
[2025-11-24 08:49:10] Starting ATLAS job with PandaID=6893843625
[2025-11-24 08:49:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 16:07:14]  *** The last 200 lines of the pilot log: ***
[2025-11-24 16:07:14] 2025-11-24 21:06:33,094 | INFO     | monitor loop #1967: job 0:6893843625 is in state 'finished'
[2025-11-24 16:07:14] 2025-11-24 21:06:33,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 16:07:14] 2025-11-24 21:06:33,920 | INFO     | time since job start (26228s) is within the limit (172800.0s)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,607 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 16:07:14] 2025-11-24 21:06:34,610 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-11-24 16:07:14] 2025-11-24 21:06:34,612 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893843625/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,613 | INFO     | extracted standard info from prmon json
[2025-11-24 16:07:14] 2025-11-24 21:06:34,613 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 16:07:14] 2025-11-24 21:06:34,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 16:07:14] 2025-11-24 21:06:34,620 | INFO     | fitting pss+swap vs Time
[2025-11-24 16:07:14] 2025-11-24 21:06:34,620 | INFO     | sum of square deviations: 24653555201.490685
[2025-11-24 16:07:14] 2025-11-24 21:06:34,624 | INFO     | sum of deviations: 339202639133.1184
[2025-11-24 16:07:14] 2025-11-24 21:06:34,624 | INFO     | mean x: 1764005279.704651
[2025-11-24 16:07:14] 2025-11-24 21:06:34,624 | INFO     | mean y: 3423330.8906976744
[2025-11-24 16:07:14] 2025-11-24 21:06:34,625 | INFO     | intersect: -24267122699.094975
[2025-11-24 16:07:14] 2025-11-24 21:06:34,625 | INFO     | chi2: 6.435334184387191
[2025-11-24 16:07:14] 2025-11-24 21:06:34,626 | INFO     | sum of square deviations: 23803528893.77885
[2025-11-24 16:07:14] 2025-11-24 21:06:34,629 | INFO     | sum of deviations: 512784567156.71765
[2025-11-24 16:07:14] 2025-11-24 21:06:34,629 | INFO     | mean x: 1764005127.207059
[2025-11-24 16:07:14] 2025-11-24 21:06:34,630 | INFO     | mean y: 3454445.094117647
[2025-11-24 16:07:14] 2025-11-24 21:06:34,630 | INFO     | intersect: -37997407093.27683
[2025-11-24 16:07:14] 2025-11-24 21:06:34,630 | INFO     | chi2: 3.105526067075345
[2025-11-24 16:07:14] 2025-11-24 21:06:34,630 | INFO     | current chi2=3.105526067075345 (change=51.74258277666942 %)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,631 | INFO     | sum of square deviations: 22973270398.561993
[2025-11-24 16:07:14] 2025-11-24 21:06:34,635 | INFO     | sum of deviations: 580138067801.1292
[2025-11-24 16:07:14] 2025-11-24 21:06:34,635 | INFO     | mean x: 1764004974.709524
[2025-11-24 16:07:14] 2025-11-24 21:06:34,635 | INFO     | mean y: 3466773.492857143
[2025-11-24 16:07:14] 2025-11-24 21:06:34,635 | INFO     | intersect: -44542495549.90452
[2025-11-24 16:07:14] 2025-11-24 21:06:34,635 | INFO     | chi2: 2.3569374806679515
[2025-11-24 16:07:14] 2025-11-24 21:06:34,636 | INFO     | current chi2=2.3569374806679515 (change=24.105049200645837 %)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,636 | INFO     | right removable region: 419
[2025-11-24 16:07:14] 2025-11-24 21:06:34,636 | INFO     | sum of square deviations: 23803527306.597576
[2025-11-24 16:07:14] 2025-11-24 21:06:34,640 | INFO     | sum of deviations: 207108689509.15558
[2025-11-24 16:07:14] 2025-11-24 21:06:34,640 | INFO     | mean x: 1764005432.202353
[2025-11-24 16:07:14] 2025-11-24 21:06:34,640 | INFO     | mean y: 3446943.044705882
[2025-11-24 16:07:14] 2025-11-24 21:06:34,640 | INFO     | intersect: -15344734385.073002
[2025-11-24 16:07:14] 2025-11-24 21:06:34,641 | INFO     | chi2: 4.244066026510312
[2025-11-24 16:07:14] 2025-11-24 21:06:34,641 | INFO     | current chi2=4.244066026510312 (change=34.0505729009867 %)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,642 | INFO     | sum of square deviations: 22973241787.79758
[2025-11-24 16:07:14] 2025-11-24 21:06:34,645 | INFO     | sum of deviations: 174997723491.2976
[2025-11-24 16:07:14] 2025-11-24 21:06:34,645 | INFO     | mean x: 1764005584.702381
[2025-11-24 16:07:14] 2025-11-24 21:06:34,646 | INFO     | mean y: 3452833.8023809525
[2025-11-24 16:07:14] 2025-11-24 21:06:34,646 | INFO     | intersect: -13433787082.107912
[2025-11-24 16:07:14] 2025-11-24 21:06:34,646 | INFO     | chi2: 4.1921634087094555
[2025-11-24 16:07:14] 2025-11-24 21:06:34,646 | INFO     | current chi2=4.1921634087094555 (change=1.222945578052983 %)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,646 | INFO     | left removable region: 20
[2025-11-24 16:07:14] 2025-11-24 21:06:34,647 | INFO     | sum of square deviations: 19696765376.556324
[2025-11-24 16:07:14] 2025-11-24 21:06:34,650 | INFO     | sum of deviations: 373927010729.9546
[2025-11-24 16:07:14] 2025-11-24 21:06:34,650 | INFO     | mean x: 1764005554.2030075
[2025-11-24 16:07:14] 2025-11-24 21:06:34,651 | INFO     | mean y: 3505232.7042606515
[2025-11-24 16:07:14] 2025-11-24 21:06:34,651 | INFO     | intersect: -33484700124.062294
[2025-11-24 16:07:14] 2025-11-24 21:06:34,651 | INFO     | chi2: 0.05810208968978847
[2025-11-24 16:07:14] 2025-11-24 21:06:34,651 | INFO     | current memory leak: 18.98 B/s (using 399 data points, chi2=0.06)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | could have reported an average CPU frequency of 2399 MHz (18 samples)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | ..............................
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | . Timing measurements:
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | . get job = 0 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | . initial setup = 2 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | . payload setup = 7 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | . stage-in = 0 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,652 | INFO     | . payload execution = 26187 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,653 | INFO     | . stage-out = 3 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,653 | INFO     | . log creation = 0 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,653 | INFO     | ..............................
[2025-11-24 16:07:14] 2025-11-24 21:06:34,734 | INFO     | 
[2025-11-24 16:07:14] 2025-11-24 21:06:34,734 | INFO     | job summary report
[2025-11-24 16:07:14] 2025-11-24 21:06:34,734 | INFO     | --------------------------------------------------
[2025-11-24 16:07:14] 2025-11-24 21:06:34,734 | INFO     | PanDA job id: 6893843625
[2025-11-24 16:07:14] 2025-11-24 21:06:34,734 | INFO     | task id: 47523449
[2025-11-24 16:07:14] 2025-11-24 21:06:34,735 | INFO     | errors: (none)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 16:07:14] 2025-11-24 21:06:34,735 | INFO     | pilot state: finished 
[2025-11-24 16:07:14] 2025-11-24 21:06:34,735 | INFO     | transexitcode: 0
[2025-11-24 16:07:14] 2025-11-24 21:06:34,735 | INFO     | exeerrorcode: 0
[2025-11-24 16:07:14] 2025-11-24 21:06:34,735 | INFO     | exeerrordiag: 
[2025-11-24 16:07:14] 2025-11-24 21:06:34,736 | INFO     | exitcode: 0
[2025-11-24 16:07:14] 2025-11-24 21:06:34,736 | INFO     | exitmsg: OK
[2025-11-24 16:07:14] 2025-11-24 21:06:34,736 | INFO     | cpuconsumptiontime: 300074 s
[2025-11-24 16:07:14] 2025-11-24 21:06:34,736 | INFO     | nevents: 1000
[2025-11-24 16:07:14] 2025-11-24 21:06:34,736 | INFO     | neventsw: 0
[2025-11-24 16:07:14] 2025-11-24 21:06:34,736 | INFO     | pid: 16511
[2025-11-24 16:07:14] 2025-11-24 21:06:34,737 | INFO     | pgrp: 16511
[2025-11-24 16:07:14] 2025-11-24 21:06:34,737 | INFO     | corecount: 12
[2025-11-24 16:07:14] 2025-11-24 21:06:34,737 | INFO     | event service: False
[2025-11-24 16:07:14] 2025-11-24 21:06:34,737 | INFO     | sizes: {0: 2284139, 1: 2284338, 5: 2284600, 11: 2284656, 26199: 2322061, 26203: 2331055, 26206: 2331239, 26213: 2331485}
[2025-11-24 16:07:14] 2025-11-24 21:06:34,737 | INFO     | --------------------------------------------------
[2025-11-24 16:07:14] 2025-11-24 21:06:34,737 | INFO     | 
[2025-11-24 16:07:14] 2025-11-24 21:06:34,738 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 16:07:14] 2025-11-24 21:06:34,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,805 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,805 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 16:07:14] 2025-11-24 21:06:34,806 | INFO     | job 6893843625 has completed (purged errors)
[2025-11-24 16:07:14] 2025-11-24 21:06:34,806 | INFO     | overall cleanup function is called
[2025-11-24 16:07:14] 2025-11-24 21:06:35,043 | INFO     | PID=10144 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 16:07:14] 2025-11-24 21:06:35,822 | INFO     | --- collectZombieJob: --- 10, [16511]
[2025-11-24 16:07:14] 2025-11-24 21:06:35,822 | INFO     | zombie collector waiting for pid 16511
[2025-11-24 16:07:14] 2025-11-24 21:06:35,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 16:07:14] 2025-11-24 21:06:35,822 | INFO     | collected zombie processes
[2025-11-24 16:07:14] 2025-11-24 21:06:35,822 | INFO     | will attempt to kill all subprocesses of pid=16511
[2025-11-24 16:07:14] 2025-11-24 21:06:35,917 | INFO     | process IDs to be killed: [16511] (in reverse order)
[2025-11-24 16:07:14] 2025-11-24 21:06:35,966 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 16:07:14] 2025-11-24 21:06:35,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 16:07:14] 2025-11-24 21:06:35,970 | INFO     | did not find any defunct processes belonging to 16511
[2025-11-24 16:07:14] 2025-11-24 21:06:35,972 | INFO     | did not find any defunct processes belonging to 16511
[2025-11-24 16:07:14] 2025-11-24 21:06:35,974 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 16:07:14] 2025-11-24 21:06:35,974 | INFO     | ready for new job
[2025-11-24 16:07:14] 2025-11-24 21:06:35,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 16:07:14] 2025-11-24 21:06:35,976 | INFO     | ***************************************
[2025-11-24 16:07:14] 2025-11-24 21:06:35,976 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 16:07:14] 2025-11-24 21:06:35,977 | INFO     | ***************************************
[2025-11-24 16:07:14] 2025-11-24 21:06:35,977 | INFO     | 
[2025-11-24 16:07:14] 2025-11-24 21:06:35,977 | INFO     | architecture information:
[2025-11-24 16:07:14] 2025-11-24 21:06:35,978 | INFO     | executing command: cat /etc/os-release
[2025-11-24 16:07:14] 2025-11-24 21:06:35,994 | INFO     | cat /etc/os-release:
[2025-11-24 16:07:14] NAME="CentOS Linux"
[2025-11-24 16:07:14] VERSION="7 (Core)"
[2025-11-24 16:07:14] ID="centos"
[2025-11-24 16:07:14] ID_LIKE="rhel fedora"
[2025-11-24 16:07:14] VERSION_ID="7"
[2025-11-24 16:07:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 16:07:14] ANSI_COLOR="0;31"
[2025-11-24 16:07:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 16:07:14] HOME_URL="https://www.centos.org/"
[2025-11-24 16:07:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 16:07:14] 
[2025-11-24 16:07:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 16:07:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 16:07:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 16:07:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 16:07:14] 
[2025-11-24 16:07:14] 2025-11-24 21:06:35,994 | INFO     | ***************************************
[2025-11-24 16:07:14] 2025-11-24 21:06:36,497 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 16:07:14] 2025-11-24 21:06:36,514 | INFO     | sufficient remaining disk space (28246540288 B)
[2025-11-24 16:07:14] 2025-11-24 21:06:36,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 16:07:14] 2025-11-24 21:06:36,514 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 16:07:14] 2025-11-24 21:06:36,514 | INFO     | update_server=False
[2025-11-24 16:07:14] 2025-11-24 21:06:36,514 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 16:07:14] 2025-11-24 21:06:36,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 16:07:14] 2025-11-24 21:06:36,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:07:14] 2025-11-24 21:06:36,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:07:14] 2025-11-24 21:06:36,612 | INFO     | aborting loop
[2025-11-24 16:07:14] 2025-11-24 21:06:36,735 | INFO     | all job control threads have been joined
[2025-11-24 16:07:14] 2025-11-24 21:06:36,980 | INFO     | all data control threads have been joined
[2025-11-24 16:07:14] 2025-11-24 21:06:37,520 | INFO     | [job] retrieve thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,521 | INFO     | [job] queue monitor thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,617 | INFO     | [job] job monitor thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,689 | INFO     | [payload] failed_post thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,741 | INFO     | [job] control thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,879 | INFO     | [data] copytool_in thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,882 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,893 | INFO     | [payload] validate_post thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:37,957 | INFO     | all payload control threads have been joined
[2025-11-24 16:07:14] 2025-11-24 21:06:37,989 | INFO     | [data] control thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:38,100 | INFO     | [job] validate thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:38,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 16:07:14] 2025-11-24 21:06:38,299 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:38,402 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:38,521 | INFO     | [data] copytool_out thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:38,962 | INFO     | [payload] control thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:39,017 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:06:42,304 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 16:07:14] 2025-11-24 21:07:07,250 | INFO     | PID=10144 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 16:07:14] 2025-11-24 21:07:07,251 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 16:07:14] 2025-11-24 21:07:07,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 16:07:14] 2025-11-24 21:07:07,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 16:07:14] 2025-11-24 21:07:08,207 | INFO     | [monitor] cgroup control has ended
[2025-11-24 16:07:14] 2025-11-24 21:07:09,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708052203328)>', '<ExcThread(monitor, started 140707020928768)>']
[2025-11-24 16:07:14] 2025-11-24 21:07:09,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 16:07:14] 2025-11-24 21:07:09,261 | INFO     | [monitor] control thread has ended
[2025-11-24 16:07:14] 2025-11-24 21:07:14,228 | INFO     | all workflow threads have been joined
[2025-11-24 16:07:14] 2025-11-24 21:07:14,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 16:07:14] 2025-11-24 21:07:14,234 | INFO     | traces error code: 0
[2025-11-24 16:07:14] 2025-11-24 21:07:14,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 16:07:14] 2025-11-24 21:07:14,332 [wrapper] ==== pilot stdout END ====
[2025-11-24 16:07:14] 2025-11-24 21:07:14,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 16:07:14] 2025-11-24 21:07:14,339 [wrapper] pilotpid: 10144
[2025-11-24 16:07:14] 2025-11-24 21:07:14,343 [wrapper] Pilot exit status: 0
[2025-11-24 16:07:14] 2025-11-24 21:07:14,357 [wrapper] pandaids: 6893843625
[2025-11-24 16:07:14] 2025-11-24 21:07:14,398 [wrapper] cleanup supervisor_pilot 22633 10145
[2025-11-24 16:07:14] 2025-11-24 21:07:14,402 [wrapper] Test setup, not cleaning
[2025-11-24 16:07:14] 2025-11-24 21:07:14,406 [wrapper] apfmon messages muted
[2025-11-24 16:07:14] 2025-11-24 21:07:14,409 [wrapper] ==== wrapper stdout END ====
[2025-11-24 16:07:14] 2025-11-24 21:07:14,413 [wrapper] ==== wrapper stderr END ====
[2025-11-24 16:07:14]  *** Error codes and diagnostics ***
[2025-11-24 16:07:14]     "exeErrorCode": 0,
[2025-11-24 16:07:14]     "exeErrorDiag": "",
[2025-11-24 16:07:14]     "pilotErrorCode": 0,
[2025-11-24 16:07:14]     "pilotErrorDiag": "",
[2025-11-24 16:07:14]  *** Listing of results directory ***
[2025-11-24 16:07:14] total 1316132
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-24 16:07:14] -rwx------ 1 boincer umatlas     36292 Nov 20 05:22 runpilot2-wrapper.sh
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:23 queuedata.json
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas       100 Nov 24 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 16:07:14] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 08:48 run_atlas
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas       105 Nov 24 08:48 job.xml
[2025-11-24 16:07:14] -rw-r--r-- 2 boincer umatlas 407151923 Nov 24 08:49 EVNT.47493127._000204.pool.root.1
[2025-11-24 16:07:14] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 08:49 start_atlas.sh
[2025-11-24 16:07:14] drwxrwx--x 2 boincer umatlas      4096 Nov 24 08:49 shared
[2025-11-24 16:07:14] -rw-r--r-- 2 boincer umatlas    590106 Nov 24 08:49 input.tar.gz
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas         0 Nov 24 08:49 boinc_lockfile
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas      2786 Nov 24 08:49 pandaJob.out
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas        57 Nov 24 08:49 setup.sh.local
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas    988280 Nov 24 08:49 agis_schedconf.cvmfs.json
[2025-11-24 16:07:14] drwx------ 5 boincer umatlas      4096 Nov 24 08:49 pilot3
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas       532 Nov 24 15:57 boinc_task_state.xml
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 16:04 init_data.xml
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas 924957411 Nov 24 16:05 HITS.47523449._002037.pool.root.1
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas      1065 Nov 24 16:06 memory_monitor_summary.json
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas   1516227 Nov 24 16:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas   2176657 Nov 24 16:06 log.47523449._002037.job.log.tgz.1
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas      8682 Nov 24 16:06 heartbeat.json
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas        95 Nov 24 16:07 pilot_heartbeat.json
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas        29 Nov 24 16:07 wrapper_checkpoint.txt
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 16:07 boinc_mmap_file
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas      4746 Nov 24 16:07 pilotlog.txt
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas   3669507 Nov 24 16:07 log.47523449._002037.job.log.1
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas       353 Nov 24 16:07 output.list
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas       620 Nov 24 16:07 runtime_log
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas   5867520 Nov 24 16:07 result.tar.gz
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 16:07 runtime_log.err
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas       670 Nov 24 16:07 E7PMDmqyGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfRGKDmAfuDpn.diag
[2025-11-24 16:07:14] -rw-r--r-- 1 boincer umatlas     21433 Nov 24 16:07 stderr.txt
[2025-11-24 16:07:14] HITS file was successfully produced:
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas 924957411 Nov 24 16:05 shared/HITS.pool.root.1
[2025-11-24 16:07:14]  *** Contents of shared directory: ***
[2025-11-24 16:07:14] total 1307224
[2025-11-24 16:07:14] -rw-r--r-- 2 boincer umatlas 407151923 Nov 24 08:49 ATLAS.root_0
[2025-11-24 16:07:14] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 08:49 start_atlas.sh
[2025-11-24 16:07:14] -rw-r--r-- 2 boincer umatlas    590106 Nov 24 08:49 input.tar.gz
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas 924957411 Nov 24 16:05 HITS.pool.root.1
[2025-11-24 16:07:14] -rw------- 1 boincer umatlas   5867520 Nov 24 16:07 result.tar.gz
16:07:16 (6460): run_atlas exited; CPU time 293337.136642
16:07:16 (6460): called boinc_finish(0)

</stderr_txt>
]]>

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