Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:13:20 (1608115): wrapper (7.7.26015): starting
07:13:20 (1608115): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 07:13:20] Arguments: --nthreads 3
[2025-11-27 07:13:20] Threads: 3
[2025-11-27 07:13:20] Checking for CVMFS
[2025-11-27 07:13:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:13:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:13:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:13:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:13:20] 2.9.2.0 4065016 12300 93440 153350 3 9 35005866 36864001 0 130560 1 4580661 99.935 603534 773 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 07:13:20] CVMFS is ok
[2025-11-27 07:13:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:13:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:13:20] Further information can be found at the LHC@home message board.
[2025-11-27 07:13:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:13:20] Checking for apptainer binary...
[2025-11-27 07:13:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:13:20] Running /usr/bin/apptainer --version
[2025-11-27 07:13:20] apptainer version 1.4.1-1.1
[2025-11-27 07:13:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:13:20] thA312a
[2025-11-27 07:13:20] apptainer works
[2025-11-27 07:13:20] Set ATHENA_PROC_NUMBER=3
[2025-11-27 07:13:20] Set ATHENA_CORE_NUMBER=3
[2025-11-27 07:13:20] Starting ATLAS job with PandaID=6895355237
[2025-11-27 07:13:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:10:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:10:18] 2025-11-27 14:09:46,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:10:18] 2025-11-27 14:09:46,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:10:18] 2025-11-27 14:09:46,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:10:18] 2025-11-27 14:09:46,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:10:18] 2025-11-27 14:09:46,693 | INFO     | job 6895355237 has completed (purged errors)
[2025-11-27 15:10:18] 2025-11-27 14:09:46,693 | INFO     | overall cleanup function is called
[2025-11-27 15:10:18] 2025-11-27 14:09:47,702 | INFO     | --- collectZombieJob: --- 10, [1618293]
[2025-11-27 15:10:18] 2025-11-27 14:09:47,702 | INFO     | zombie collector waiting for pid 1618293
[2025-11-27 15:10:18] 2025-11-27 14:09:47,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:10:18] 2025-11-27 14:09:47,702 | INFO     | collected zombie processes
[2025-11-27 15:10:18] 2025-11-27 14:09:47,702 | INFO     | will attempt to kill all subprocesses of pid=1618293
[2025-11-27 15:10:18] 2025-11-27 14:09:47,751 | INFO     | process IDs to be killed: [1618293] (in reverse order)
[2025-11-27 15:10:18] 2025-11-27 14:09:47,779 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:10:18] 2025-11-27 14:09:47,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:10:18] 2025-11-27 14:09:47,780 | INFO     | did not find any defunct processes belonging to 1618293
[2025-11-27 15:10:18] 2025-11-27 14:09:47,781 | INFO     | did not find any defunct processes belonging to 1618293
[2025-11-27 15:10:18] 2025-11-27 14:09:47,782 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:10:18] 2025-11-27 14:09:47,782 | INFO     | ready for new job
[2025-11-27 15:10:18] 2025-11-27 14:09:47,782 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:10:18] 2025-11-27 14:09:47,783 | INFO     | ***************************************
[2025-11-27 15:10:18] 2025-11-27 14:09:47,783 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:10:18] 2025-11-27 14:09:47,783 | INFO     | ***************************************
[2025-11-27 15:10:18] 2025-11-27 14:09:47,783 | INFO     | 
[2025-11-27 15:10:18] 2025-11-27 14:09:47,784 | INFO     | architecture information:
[2025-11-27 15:10:18] 2025-11-27 14:09:47,784 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:10:18] 2025-11-27 14:09:47,794 | INFO     | cat /etc/os-release:
[2025-11-27 15:10:18] NAME="CentOS Linux"
[2025-11-27 15:10:18] VERSION="7 (Core)"
[2025-11-27 15:10:18] ID="centos"
[2025-11-27 15:10:18] ID_LIKE="rhel fedora"
[2025-11-27 15:10:18] VERSION_ID="7"
[2025-11-27 15:10:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:10:18] ANSI_COLOR="0;31"
[2025-11-27 15:10:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:10:18] HOME_URL="https://www.centos.org/"
[2025-11-27 15:10:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:10:18] 
[2025-11-27 15:10:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:10:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:10:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:10:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:10:18] 
[2025-11-27 15:10:18] 2025-11-27 14:09:47,794 | INFO     | ***************************************
[2025-11-27 15:10:18] 2025-11-27 14:09:48,297 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 15:10:18] 2025-11-27 14:09:48,311 | INFO     | sufficient remaining disk space (266614079488 B)
[2025-11-27 15:10:18] 2025-11-27 14:09:48,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:10:18] 2025-11-27 14:09:48,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:10:18] 2025-11-27 14:09:48,311 | INFO     | update_server=False
[2025-11-27 15:10:18] 2025-11-27 14:09:48,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:10:18] 2025-11-27 14:09:48,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:10:18] 2025-11-27 14:09:48,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:10:18] 2025-11-27 14:09:48,312 | INFO     | aborting loop
[2025-11-27 15:10:18] 2025-11-27 14:09:48,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:10:18] 2025-11-27 14:09:48,384 | INFO     | all data control threads have been joined
[2025-11-27 15:10:18] 2025-11-27 14:09:49,316 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,317 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,317 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,350 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,390 | INFO     | [data] control thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,419 | INFO     | all payload control threads have been joined
[2025-11-27 15:10:18] 2025-11-27 14:09:49,636 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,810 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:49,900 | INFO     | all job control threads have been joined
[2025-11-27 15:10:18] 2025-11-27 14:09:50,351 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,425 | INFO     | [payload] control thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,448 | INFO     | [job] validate thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,449 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:10:18] 2025-11-27 14:09:50,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,647 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,698 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:50,904 | INFO     | [job] control thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:54,504 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:10:18] 2025-11-27 14:09:57,108 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:10:18] 2025-11-27 14:09:57,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825239791424)>', '<ExcThread(monitor, started 139824958768896)>']
[2025-11-27 15:10:18] 2025-11-27 14:10:02,521 | INFO     | all workflow threads have been joined
[2025-11-27 15:10:18] 2025-11-27 14:10:02,522 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:10:18] 2025-11-27 14:10:02,522 | INFO     | traces error code: 0
[2025-11-27 15:10:18] 2025-11-27 14:10:02,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:10:18] 2025-11-27 14:10:18,825 | INFO     | PID=1611838 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:10:18] 2025-11-27 14:10:18,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:10:18] 2025-11-27 14:10:18,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:10:18] 2025-11-27 14:10:18,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:10:18] 2025-11-27 14:10:18,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:10:18] 2025-11-27 14:10:18,826 | INFO     | [monitor] control thread has ended
[2025-11-27 15:10:18] 2025-11-27 14:10:18,876 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:10:18] 2025-11-27 14:10:18,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:10:18] 2025-11-27 14:10:18,881 [wrapper] pilotpid: 1611838
[2025-11-27 15:10:18] 2025-11-27 14:10:18,884 [wrapper] Pilot exit status: 0
[2025-11-27 15:10:18] 2025-11-27 14:10:18,891 [wrapper] pandaids: 6895355237
[2025-11-27 15:10:18] 2025-11-27 14:10:18,909 [wrapper] cleanup supervisor_pilot 1672092 1611839
[2025-11-27 15:10:18] 2025-11-27 14:10:18,912 [wrapper] Test setup, not cleaning
[2025-11-27 15:10:18] 2025-11-27 14:10:18,914 [wrapper] apfmon messages muted
[2025-11-27 15:10:18] 2025-11-27 14:10:18,917 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:10:18] 2025-11-27 14:10:18,919 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:10:18]  *** Error codes and diagnostics ***
[2025-11-27 15:10:18]     "exeErrorCode": 0,
[2025-11-27 15:10:18]     "exeErrorDiag": "",
[2025-11-27 15:10:18]     "pilotErrorCode": 0,
[2025-11-27 15:10:18]     "pilotErrorDiag": "",
[2025-11-27 15:10:18]  *** Listing of results directory ***
[2025-11-27 15:10:18] total 1323412
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc    576529 Nov 23 07:48 pilot3.tar.gz
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc      5112 Nov 23 08:06 queuedata.json
[2025-11-27 15:10:18] -rwx------ 1 boinc boinc     36292 Nov 23 08:06 runpilot2-wrapper.sh
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:10:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:13 run_atlas
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:13 job.xml
[2025-11-27 15:10:18] -rw-r--r-- 2 boinc boinc 410816228 Nov 27 07:13 EVNT.47483658._000653.pool.root.1
[2025-11-27 15:10:18] -rw-r--r-- 2 boinc boinc    590100 Nov 27 07:13 input.tar.gz
[2025-11-27 15:10:18] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:13 start_atlas.sh
[2025-11-27 15:10:18] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:13 shared
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:13 boinc_setup_complete
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc      6448 Nov 27 07:13 init_data.xml
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:13 boinc_lockfile
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc      2786 Nov 27 07:13 pandaJob.out
[2025-11-27 15:10:18] -rw------- 1 boinc boinc    991554 Nov 27 07:13 agis_schedconf.cvmfs.json
[2025-11-27 15:10:18] drwx------ 5 boinc boinc      4096 Nov 27 07:13 pilot3
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc       531 Nov 27 15:04 boinc_task_state.xml
[2025-11-27 15:10:18] -rw------- 1 boinc boinc 930070072 Nov 27 15:09 HITS.47556137._006482.pool.root.1
[2025-11-27 15:10:18] -rw------- 1 boinc boinc      1033 Nov 27 15:09 memory_monitor_summary.json
[2025-11-27 15:10:18] -rw------- 1 boinc boinc   1516240 Nov 27 15:09 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:10:18] -rw------- 1 boinc boinc   1171584 Nov 27 15:09 log.47556137._006482.job.log.tgz.1
[2025-11-27 15:10:18] -rw------- 1 boinc boinc      8561 Nov 27 15:09 heartbeat.json
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc      8192 Nov 27 15:09 boinc_mmap_file
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc        28 Nov 27 15:09 wrapper_checkpoint.txt
[2025-11-27 15:10:18] -rw------- 1 boinc boinc       747 Nov 27 15:10 pilotlog.txt
[2025-11-27 15:10:18] -rw------- 1 boinc boinc        95 Nov 27 15:10 pilot_heartbeat.json
[2025-11-27 15:10:18] -rw------- 1 boinc boinc   4022062 Nov 27 15:10 log.47556137._006482.job.log.1
[2025-11-27 15:10:18] -rw------- 1 boinc boinc       353 Nov 27 15:10 output.list
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc       620 Nov 27 15:10 runtime_log
[2025-11-27 15:10:18] -rw------- 1 boinc boinc   5212160 Nov 27 15:10 result.tar.gz
[2025-11-27 15:10:18] -rw------- 1 boinc boinc       666 Nov 27 15:10 yHtNDmQMJh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwSIKDmknp2Co.diag
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc      8903 Nov 27 15:10 runtime_log.err
[2025-11-27 15:10:18] -rw-r--r-- 1 boinc boinc     11436 Nov 27 15:10 stderr.txt
[2025-11-27 15:10:18] HITS file was successfully produced:
[2025-11-27 15:10:18] -rw------- 1 boinc boinc 930070072 Nov 27 15:09 shared/HITS.pool.root.1
[2025-11-27 15:10:18]  *** Contents of shared directory: ***
[2025-11-27 15:10:18] total 1315156
[2025-11-27 15:10:18] -rw-r--r-- 2 boinc boinc 410816228 Nov 27 07:13 ATLAS.root_0
[2025-11-27 15:10:18] -rw-r--r-- 2 boinc boinc    590100 Nov 27 07:13 input.tar.gz
[2025-11-27 15:10:18] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:13 start_atlas.sh
[2025-11-27 15:10:18] -rw------- 1 boinc boinc 930070072 Nov 27 15:09 HITS.pool.root.1
[2025-11-27 15:10:18] -rw------- 1 boinc boinc   5212160 Nov 27 15:10 result.tar.gz
15:10:20 (1608115): run_atlas exited; CPU time 84191.498090
15:10:20 (1608115): called boinc_finish(0)

</stderr_txt>
]]>

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