Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:19:29 (10397): wrapper (7.7.26015): starting
08:19:29 (10397): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:19:29] Arguments: --nthreads 8
[2025-11-24 08:19:29] Threads: 8
[2025-11-24 08:19:29] Checking for CVMFS
[2025-11-24 08:19:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:19:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:19:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:19:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:19:30] 2.11.2.0 2888 46035 80360 153247 1 55 13935406 20275200 1 130560 0 8112275 99.766 2622880 29240 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 08:19:30] CVMFS is ok
[2025-11-24 08:19:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:19:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:19:30] Further information can be found at the LHC@home message board.
[2025-11-24 08:19:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:19:30] Checking for apptainer binary...
[2025-11-24 08:19:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:19:30] Running /usr/bin/apptainer --version
[2025-11-24 08:19:30] apptainer version 1.3.2-1.el7
[2025-11-24 08:19:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:19:31] c-204-6.aglt2.org
[2025-11-24 08:19:31] apptainer works
[2025-11-24 08:19:31] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:19:31] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:19:31] Starting ATLAS job with PandaID=6895355354
[2025-11-24 08:19:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:28:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:28:30] 2025-11-25 01:27:55,437 | INFO     | monitor loop #3210: job 0:6895355354 is in state 'finished'
[2025-11-24 20:28:30] 2025-11-25 01:27:55,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,610 | INFO     | time since job start (43687s) is within the limit (172800.0s)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,644 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 20:28:30] 2025-11-25 01:27:56,650 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-24 20:28:30] 2025-11-25 01:27:56,653 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355354/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,654 | INFO     | extracted standard info from prmon json
[2025-11-24 20:28:30] 2025-11-25 01:27:56,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:28:30] 2025-11-25 01:27:56,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:28:30] 2025-11-25 01:27:56,667 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:28:30] 2025-11-25 01:27:56,668 | INFO     | sum of square deviations: 113819903632.3962
[2025-11-24 20:28:30] 2025-11-25 01:27:56,678 | INFO     | sum of deviations: 677583339084.5481
[2025-11-24 20:28:30] 2025-11-25 01:27:56,679 | INFO     | mean x: 1764012229.1815643
[2025-11-24 20:28:30] 2025-11-25 01:27:56,679 | INFO     | mean y: 3283729.5111731845
[2025-11-24 20:28:30] 2025-11-25 01:27:56,679 | INFO     | intersect: -10498089565.401869
[2025-11-24 20:28:30] 2025-11-25 01:27:56,680 | INFO     | chi2: 6.196587561133221
[2025-11-24 20:28:30] 2025-11-25 01:27:56,681 | INFO     | sum of square deviations: 111452175515.05763
[2025-11-24 20:28:30] 2025-11-25 01:27:56,691 | INFO     | sum of deviations: 953426435045.4271
[2025-11-24 20:28:30] 2025-11-25 01:27:56,691 | INFO     | mean x: 1764012076.6863573
[2025-11-24 20:28:30] 2025-11-25 01:27:56,691 | INFO     | mean y: 3301487.064697609
[2025-11-24 20:28:30] 2025-11-25 01:27:56,691 | INFO     | intersect: -15087079098.86589
[2025-11-24 20:28:30] 2025-11-25 01:27:56,692 | INFO     | chi2: 3.006996170248247
[2025-11-24 20:28:30] 2025-11-25 01:27:56,692 | INFO     | current chi2=3.006996170248247 (change=51.473353025639604 %)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,693 | INFO     | sum of square deviations: 109117517785.1856
[2025-11-24 20:28:30] 2025-11-25 01:27:56,703 | INFO     | sum of deviations: 1043659324600.6532
[2025-11-24 20:28:30] 2025-11-25 01:27:56,704 | INFO     | mean x: 1764011924.1912181
[2025-11-24 20:28:30] 2025-11-25 01:27:56,704 | INFO     | mean y: 3307379.2988668554
[2025-11-24 20:28:30] 2025-11-25 01:27:56,704 | INFO     | intersect: -16868662683.41139
[2025-11-24 20:28:30] 2025-11-25 01:27:56,705 | INFO     | chi2: 2.5834082514047827
[2025-11-24 20:28:30] 2025-11-25 01:27:56,705 | INFO     | current chi2=2.5834082514047827 (change=14.086746203221617 %)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,705 | INFO     | right removable region: 705
[2025-11-24 20:28:30] 2025-11-25 01:27:56,706 | INFO     | sum of square deviations: 111451877835.05757
[2025-11-24 20:28:30] 2025-11-25 01:27:56,716 | INFO     | sum of deviations: 446013011302.2423
[2025-11-24 20:28:30] 2025-11-25 01:27:56,716 | INFO     | mean x: 1764012381.6863573
[2025-11-24 20:28:30] 2025-11-25 01:27:56,717 | INFO     | mean y: 3298617.2208157526
[2025-11-24 20:28:30] 2025-11-25 01:27:56,717 | INFO     | intersect: -7056003474.528155
[2025-11-24 20:28:30] 2025-11-25 01:27:56,717 | INFO     | chi2: 3.7507972744169837
[2025-11-24 20:28:30] 2025-11-25 01:27:56,718 | INFO     | current chi2=3.7507972744169837 (change=39.46995443196732 %)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,718 | INFO     | sum of square deviations: 109117008923.94466
[2025-11-24 20:28:30] 2025-11-25 01:27:56,729 | INFO     | sum of deviations: 401950726185.26306
[2025-11-24 20:28:30] 2025-11-25 01:27:56,729 | INFO     | mean x: 1764012534.1883852
[2025-11-24 20:28:30] 2025-11-25 01:27:56,729 | INFO     | mean y: 3301493.178470255
[2025-11-24 20:28:30] 2025-11-25 01:27:56,729 | INFO     | intersect: -6494733287.184121
[2025-11-24 20:28:30] 2025-11-25 01:27:56,730 | INFO     | chi2: 3.707281828896811
[2025-11-24 20:28:30] 2025-11-25 01:27:56,730 | INFO     | current chi2=3.707281828896811 (change=1.1601652218577154 %)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,730 | INFO     | left removable region: 20
[2025-11-24 20:28:30] 2025-11-25 01:27:56,731 | INFO     | sum of square deviations: 99666985021.64981
[2025-11-24 20:28:30] 2025-11-25 01:27:56,741 | INFO     | sum of deviations: 718412242628.2781
[2025-11-24 20:28:30] 2025-11-25 01:27:56,741 | INFO     | mean x: 1764012503.7007298
[2025-11-24 20:28:30] 2025-11-25 01:27:56,741 | INFO     | mean y: 3329387.2452554745
[2025-11-24 20:28:30] 2025-11-25 01:27:56,741 | INFO     | intersect: -12711896005.924637
[2025-11-24 20:28:30] 2025-11-25 01:27:56,742 | INFO     | chi2: 0.04621291808450295
[2025-11-24 20:28:30] 2025-11-25 01:27:56,742 | INFO     | current memory leak: 7.21 B/s (using 685 data points, chi2=0.05)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,742 | INFO     | could have reported an average CPU frequency of 2156 MHz (27 samples)
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | ..............................
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . Timing measurements:
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . get job = 0 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . initial setup = 2 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . payload setup = 9 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . stage-in = 0 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . payload execution = 43643 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,743 | INFO     | . stage-out = 3 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,744 | INFO     | . log creation = 0 s
[2025-11-24 20:28:30] 2025-11-25 01:27:56,744 | INFO     | ..............................
[2025-11-24 20:28:30] 2025-11-25 01:27:57,219 | INFO     | 
[2025-11-24 20:28:30] 2025-11-25 01:27:57,219 | INFO     | job summary report
[2025-11-24 20:28:30] 2025-11-25 01:27:57,220 | INFO     | --------------------------------------------------
[2025-11-24 20:28:30] 2025-11-25 01:27:57,220 | INFO     | PanDA job id: 6895355354
[2025-11-24 20:28:30] 2025-11-25 01:27:57,220 | INFO     | task id: 47556137
[2025-11-24 20:28:30] 2025-11-25 01:27:57,220 | INFO     | errors: (none)
[2025-11-24 20:28:30] 2025-11-25 01:27:57,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:28:30] 2025-11-25 01:27:57,220 | INFO     | pilot state: finished 
[2025-11-24 20:28:30] 2025-11-25 01:27:57,221 | INFO     | transexitcode: 0
[2025-11-24 20:28:30] 2025-11-25 01:27:57,221 | INFO     | exeerrorcode: 0
[2025-11-24 20:28:30] 2025-11-25 01:27:57,221 | INFO     | exeerrordiag: 
[2025-11-24 20:28:30] 2025-11-25 01:27:57,221 | INFO     | exitcode: 0
[2025-11-24 20:28:30] 2025-11-25 01:27:57,221 | INFO     | exitmsg: OK
[2025-11-24 20:28:30] 2025-11-25 01:27:57,222 | INFO     | cpuconsumptiontime: 338944 s
[2025-11-24 20:28:30] 2025-11-25 01:27:57,222 | INFO     | nevents: 1000
[2025-11-24 20:28:30] 2025-11-25 01:27:57,222 | INFO     | neventsw: 0
[2025-11-24 20:28:30] 2025-11-25 01:27:57,222 | INFO     | pid: 21851
[2025-11-24 20:28:30] 2025-11-25 01:27:57,222 | INFO     | pgrp: 21851
[2025-11-24 20:28:30] 2025-11-25 01:27:57,222 | INFO     | corecount: 8
[2025-11-24 20:28:30] 2025-11-25 01:27:57,223 | INFO     | event service: False
[2025-11-24 20:28:30] 2025-11-25 01:27:57,223 | INFO     | sizes: {0: 2284309, 6: 2284571, 11: 2284599, 43656: 2330024, 43660: 2339018, 43662: 2339074, 43670: 2339448}
[2025-11-24 20:28:30] 2025-11-25 01:27:57,223 | INFO     | --------------------------------------------------
[2025-11-24 20:28:30] 2025-11-25 01:27:57,223 | INFO     | 
[2025-11-24 20:28:30] 2025-11-25 01:27:57,223 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 20:28:30] 2025-11-25 01:27:57,253 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,253 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,253 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,254 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,254 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,254 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,254 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,254 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,255 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,255 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,255 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,255 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:28:30] 2025-11-25 01:27:57,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,257 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:28:30] 2025-11-25 01:27:57,257 | INFO     | job 6895355354 has completed (purged errors)
[2025-11-24 20:28:30] 2025-11-25 01:27:57,257 | INFO     | overall cleanup function is called
[2025-11-24 20:28:30] 2025-11-25 01:27:57,725 | INFO     | PID=14294 has CPU usage=14.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 20:28:30] 2025-11-25 01:27:58,271 | INFO     | --- collectZombieJob: --- 10, [21851]
[2025-11-24 20:28:30] 2025-11-25 01:27:58,272 | INFO     | zombie collector waiting for pid 21851
[2025-11-24 20:28:30] 2025-11-25 01:27:58,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:28:30] 2025-11-25 01:27:58,272 | INFO     | collected zombie processes
[2025-11-24 20:28:30] 2025-11-25 01:27:58,272 | INFO     | will attempt to kill all subprocesses of pid=21851
[2025-11-24 20:28:30] 2025-11-25 01:27:58,360 | INFO     | process IDs to be killed: [21851] (in reverse order)
[2025-11-24 20:28:30] 2025-11-25 01:27:58,418 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:28:30] 2025-11-25 01:27:58,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:28:30] 2025-11-25 01:27:58,423 | INFO     | did not find any defunct processes belonging to 21851
[2025-11-24 20:28:30] 2025-11-25 01:27:58,427 | INFO     | did not find any defunct processes belonging to 21851
[2025-11-24 20:28:30] 2025-11-25 01:27:58,429 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:28:30] 2025-11-25 01:27:58,429 | INFO     | ready for new job
[2025-11-24 20:28:30] 2025-11-25 01:27:58,430 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:28:30] 2025-11-25 01:27:58,433 | INFO     | ***************************************
[2025-11-24 20:28:30] 2025-11-25 01:27:58,433 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:28:30] 2025-11-25 01:27:58,434 | INFO     | ***************************************
[2025-11-24 20:28:30] 2025-11-25 01:27:58,434 | INFO     | 
[2025-11-24 20:28:30] 2025-11-25 01:27:58,434 | INFO     | architecture information:
[2025-11-24 20:28:30] 2025-11-25 01:27:58,435 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:28:30] 2025-11-25 01:27:58,454 | INFO     | cat /etc/os-release:
[2025-11-24 20:28:30] NAME="CentOS Linux"
[2025-11-24 20:28:30] VERSION="7 (Core)"
[2025-11-24 20:28:30] ID="centos"
[2025-11-24 20:28:30] ID_LIKE="rhel fedora"
[2025-11-24 20:28:30] VERSION_ID="7"
[2025-11-24 20:28:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:28:30] ANSI_COLOR="0;31"
[2025-11-24 20:28:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:28:30] HOME_URL="https://www.centos.org/"
[2025-11-24 20:28:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:28:30] 
[2025-11-24 20:28:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:28:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:28:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:28:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:28:30] 
[2025-11-24 20:28:30] 2025-11-25 01:27:58,454 | INFO     | ***************************************
[2025-11-24 20:28:30] 2025-11-25 01:27:58,958 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 20:28:30] 2025-11-25 01:27:58,979 | INFO     | sufficient remaining disk space (17471373312 B)
[2025-11-24 20:28:30] 2025-11-25 01:27:58,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:28:30] 2025-11-25 01:27:58,979 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:28:30] 2025-11-25 01:27:58,980 | INFO     | update_server=False
[2025-11-24 20:28:30] 2025-11-25 01:27:58,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:28:30] 2025-11-25 01:27:58,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:28:30] 2025-11-25 01:27:58,980 | INFO     | aborting loop
[2025-11-24 20:28:30] 2025-11-25 01:27:59,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:28:30] 2025-11-25 01:27:59,668 | INFO     | all data control threads have been joined
[2025-11-24 20:28:30] 2025-11-25 01:27:59,956 | INFO     | all payload control threads have been joined
[2025-11-24 20:28:30] 2025-11-25 01:27:59,985 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:27:59,986 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:28:30] 2025-11-25 01:28:00,154 | INFO     | all job control threads have been joined
[2025-11-24 20:28:30] 2025-11-25 01:28:00,236 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,631 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,671 | INFO     | [data] control thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,705 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,823 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,842 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,848 | INFO     | [job] validate thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:00,961 | INFO     | [payload] control thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:01,021 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:01,160 | INFO     | [job] control thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:01,568 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:28:30] 2025-11-25 01:28:01,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:28:30] 2025-11-25 01:28:02,018 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:02,849 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:03,499 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:28:30] 2025-11-25 01:28:03,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459191768896)>', '<ExcThread(monitor, started 140458315478784)>']
[2025-11-24 20:28:30] 2025-11-25 01:28:08,923 | INFO     | all workflow threads have been joined
[2025-11-24 20:28:30] 2025-11-25 01:28:08,923 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:28:30] 2025-11-25 01:28:08,924 | INFO     | traces error code: 0
[2025-11-24 20:28:30] 2025-11-25 01:28:08,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:28:30] 2025-11-25 01:28:29,936 | INFO     | PID=14294 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 20:28:30] 2025-11-25 01:28:29,936 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:28:30] 2025-11-25 01:28:29,937 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:28:30] 2025-11-25 01:28:29,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:28:30] 2025-11-25 01:28:29,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:28:30] 2025-11-25 01:28:29,937 | INFO     | [monitor] control thread has ended
[2025-11-24 20:28:30] 2025-11-25 01:28:30,048 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:28:30] 2025-11-25 01:28:30,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:28:30] 2025-11-25 01:28:30,057 [wrapper] pilotpid: 14294
[2025-11-24 20:28:30] 2025-11-25 01:28:30,062 [wrapper] Pilot exit status: 0
[2025-11-24 20:28:30] 2025-11-25 01:28:30,078 [wrapper] pandaids: 6895355354
[2025-11-24 20:28:30] 2025-11-25 01:28:30,125 [wrapper] cleanup supervisor_pilot 10027 14295
[2025-11-24 20:28:30] 2025-11-25 01:28:30,131 [wrapper] Test setup, not cleaning
[2025-11-24 20:28:30] 2025-11-25 01:28:30,136 [wrapper] apfmon messages muted
[2025-11-24 20:28:30] 2025-11-25 01:28:30,140 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:28:30] 2025-11-25 01:28:30,145 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:28:30]  *** Error codes and diagnostics ***
[2025-11-24 20:28:30]     "exeErrorCode": 0,
[2025-11-24 20:28:30]     "exeErrorDiag": "",
[2025-11-24 20:28:30]     "pilotErrorCode": 0,
[2025-11-24 20:28:30]     "pilotErrorDiag": "",
[2025-11-24 20:28:30]  *** Listing of results directory ***
[2025-11-24 20:28:30] total 1312348
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 01:48 pilot3.tar.gz
[2025-11-24 20:28:30] -rwx------ 1 boincer umatlas     36292 Nov 23 02:17 runpilot2-wrapper.sh
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 02:17 queuedata.json
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas       100 Nov 24 08:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:28:30] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 08:19 run_atlas
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas       105 Nov 24 08:19 job.xml
[2025-11-24 20:28:30] -rw-r--r-- 2 boincer umatlas 410742205 Nov 24 08:19 EVNT.47483658._000656.pool.root.1
[2025-11-24 20:28:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 08:19 start_atlas.sh
[2025-11-24 20:28:30] drwxrwx--x 2 boincer umatlas      4096 Nov 24 08:19 shared
[2025-11-24 20:28:30] -rw-r--r-- 2 boincer umatlas    590098 Nov 24 08:19 input.tar.gz
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas         0 Nov 24 08:19 boinc_lockfile
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 08:19 pandaJob.out
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas        57 Nov 24 08:19 setup.sh.local
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas    988280 Nov 24 08:19 agis_schedconf.cvmfs.json
[2025-11-24 20:28:30] drwx------ 5 boincer umatlas      4096 Nov 24 08:19 pilot3
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas       532 Nov 24 20:16 boinc_task_state.xml
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas 913262652 Nov 24 20:27 HITS.47556137._006520.pool.root.1
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas      5911 Nov 24 20:27 init_data.xml
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas      1076 Nov 24 20:27 memory_monitor_summary.json
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas        95 Nov 24 20:27 pilot_heartbeat.json
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas   1516227 Nov 24 20:27 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas   1957833 Nov 24 20:27 log.47556137._006520.job.log.tgz.1
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas      8672 Nov 24 20:27 heartbeat.json
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 20:28 boinc_mmap_file
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas        29 Nov 24 20:28 wrapper_checkpoint.txt
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas       745 Nov 24 20:28 pilotlog.txt
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas   6008263 Nov 24 20:28 log.47556137._006520.job.log.1
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas       353 Nov 24 20:28 output.list
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas       620 Nov 24 20:28 runtime_log
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas   7987200 Nov 24 20:28 result.tar.gz
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas       667 Nov 24 20:28 vgmKDmHXJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoiKKDmHxIq2n.diag
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 20:28 runtime_log.err
[2025-11-24 20:28:30] -rw-r--r-- 1 boincer umatlas     21406 Nov 24 20:28 stderr.txt
[2025-11-24 20:28:30] HITS file was successfully produced:
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas 913262652 Nov 24 20:27 shared/HITS.pool.root.1
[2025-11-24 20:28:30]  *** Contents of shared directory: ***
[2025-11-24 20:28:30] total 1301376
[2025-11-24 20:28:30] -rw-r--r-- 2 boincer umatlas 410742205 Nov 24 08:19 ATLAS.root_0
[2025-11-24 20:28:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 08:19 start_atlas.sh
[2025-11-24 20:28:30] -rw-r--r-- 2 boincer umatlas    590098 Nov 24 08:19 input.tar.gz
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas 913262652 Nov 24 20:27 HITS.pool.root.1
[2025-11-24 20:28:30] -rw------- 1 boincer umatlas   7987200 Nov 24 20:28 result.tar.gz
20:28:32 (10397): run_atlas exited; CPU time 336776.108188
20:28:32 (10397): called boinc_finish(0)

</stderr_txt>
]]>

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