Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:11:21 (1021692): wrapper (7.7.26015): starting
08:11:21 (1021692): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:11:21] Arguments: --nthreads 8
[2025-11-24 08:11:21] Threads: 8
[2025-11-24 08:11:21] Checking for CVMFS
[2025-11-24 08:11:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:11:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:11:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:11:23] 2.13.3.0 16090 27165 436432 153246 2 719 30358707 32935937 58538 16776704 0 381812303 99.629 342519403 53032 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 08:11:23] CVMFS is ok
[2025-11-24 08:11:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:11:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:11:23] Further information can be found at the LHC@home message board.
[2025-11-24 08:11:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:11:23] Checking for apptainer binary...
[2025-11-24 08:11:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:11:23] Running /usr/bin/apptainer --version
[2025-11-24 08:11:23] apptainer version 1.4.4-1.el9
[2025-11-24 08:11:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:11:24] c7-9-15.aglt2.org
[2025-11-24 08:11:24] apptainer works
[2025-11-24 08:11:24] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:11:24] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:11:24] Starting ATLAS job with PandaID=6895355197
[2025-11-24 08:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:29:56]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:29:56] 2025-11-25 01:29:10,912 | INFO     | time since job start (44199s) is within the limit (172800.0s)
[2025-11-24 20:29:56] 2025-11-25 01:29:12,231 | INFO     | monitor loop #2887: job 0:6895355197 is in state 'finished'
[2025-11-24 20:29:56] 2025-11-25 01:29:12,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:29:56] 2025-11-25 01:29:12,918 | INFO     | time since job start (44201s) is within the limit (172800.0s)
[2025-11-24 20:29:56] 2025-11-25 01:29:14,737 | INFO     | monitor loop #2888: job 0:6895355197 is in state 'finished'
[2025-11-24 20:29:56] 2025-11-25 01:29:14,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:29:56] 2025-11-25 01:29:14,925 | INFO     | time since job start (44203s) is within the limit (172800.0s)
[2025-11-24 20:29:56] 2025-11-25 01:29:17,254 | INFO     | monitor loop #2889: job 0:6895355197 is in state 'finished'
[2025-11-24 20:29:56] 2025-11-25 01:29:17,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:29:56] 2025-11-25 01:29:17,289 | INFO     | PID=1028545 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 20:29:56] 2025-11-25 01:29:17,290 | INFO     | .. there are 79 such processes running
[2025-11-24 20:29:56] 2025-11-25 01:29:18,290 | INFO     | time since job start (44207s) is within the limit (172800.0s)
[2025-11-24 20:29:56] 2025-11-25 01:29:19,765 | INFO     | monitor loop #2890: job 0:6895355197 is in state 'finished'
[2025-11-24 20:29:56] 2025-11-25 01:29:19,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,301 | INFO     | time since job start (44209s) is within the limit (172800.0s)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,800 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 20:29:56] 2025-11-25 01:29:20,823 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2414218749996
[2025-11-24 20:29:56] 2025-11-25 01:29:20,845 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895355197/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,845 | INFO     | extracted standard info from prmon json
[2025-11-24 20:29:56] 2025-11-25 01:29:20,845 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:29:56] 2025-11-25 01:29:20,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:29:56] 2025-11-25 01:29:20,852 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:29:56] 2025-11-25 01:29:20,852 | INFO     | sum of square deviations: 117191616656.39848
[2025-11-24 20:29:56] 2025-11-25 01:29:20,859 | INFO     | sum of deviations: 830861565550.0815
[2025-11-24 20:29:56] 2025-11-25 01:29:20,859 | INFO     | mean x: 1764012096.3692946
[2025-11-24 20:29:56] 2025-11-25 01:29:20,859 | INFO     | mean y: 2752311.2019363763
[2025-11-24 20:29:56] 2025-11-25 01:29:20,859 | INFO     | intersect: -12503687089.97046
[2025-11-24 20:29:56] 2025-11-25 01:29:20,859 | INFO     | chi2: 33.08180394838578
[2025-11-24 20:29:56] 2025-11-25 01:29:20,860 | INFO     | sum of square deviations: 114777131888.21074
[2025-11-24 20:29:56] 2025-11-25 01:29:20,866 | INFO     | sum of deviations: 1067911988538.5518
[2025-11-24 20:29:56] 2025-11-25 01:29:20,866 | INFO     | mean x: 1764011943.8718662
[2025-11-24 20:29:56] 2025-11-25 01:29:20,866 | INFO     | mean y: 2767282.245125348
[2025-11-24 20:29:56] 2025-11-25 01:29:20,866 | INFO     | intersect: -16409992575.01225
[2025-11-24 20:29:56] 2025-11-25 01:29:20,867 | INFO     | chi2: 29.50209502842899
[2025-11-24 20:29:56] 2025-11-25 01:29:20,867 | INFO     | current chi2=29.50209502842899 (change=10.820779077047472 %)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,867 | INFO     | right removable region: 717
[2025-11-24 20:29:56] 2025-11-25 01:29:20,867 | INFO     | sum of square deviations: 114776969018.21051
[2025-11-24 20:29:56] 2025-11-25 01:29:20,874 | INFO     | sum of deviations: 542979825765.5599
[2025-11-24 20:29:56] 2025-11-25 01:29:20,874 | INFO     | mean x: 1764012248.8718662
[2025-11-24 20:29:56] 2025-11-25 01:29:20,874 | INFO     | mean y: 2770490.082172702
[2025-11-24 20:29:56] 2025-11-25 01:29:20,874 | INFO     | intersect: -8342310162.716659
[2025-11-24 20:29:56] 2025-11-25 01:29:20,875 | INFO     | chi2: 28.35558772885183
[2025-11-24 20:29:56] 2025-11-25 01:29:20,875 | INFO     | current chi2=28.35558772885183 (change=14.286452537194746 %)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,875 | INFO     | left removable region: 10
[2025-11-24 20:29:56] 2025-11-25 01:29:20,875 | INFO     | sum of square deviations: 109582166042.16685
[2025-11-24 20:29:56] 2025-11-25 01:29:20,881 | INFO     | sum of deviations: 584314190669.2495
[2025-11-24 20:29:56] 2025-11-25 01:29:20,882 | INFO     | mean x: 1764012218.3776522
[2025-11-24 20:29:56] 2025-11-25 01:29:20,882 | INFO     | mean y: 2805401.0664780764
[2025-11-24 20:29:56] 2025-11-25 01:29:20,882 | INFO     | intersect: -9403263204.251844
[2025-11-24 20:29:56] 2025-11-25 01:29:20,882 | INFO     | chi2: 20.3936621581416
[2025-11-24 20:29:56] 2025-11-25 01:29:20,882 | INFO     | current memory leak: 5.33 B/s (using 707 data points, chi2=20.39)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | could have reported an average CPU frequency of 3785 MHz (28 samples)
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | ..............................
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | . Timing measurements:
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | . get job = 0 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | . initial setup = 5 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | . payload setup = 38 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | . stage-in = 0 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,883 | INFO     | . payload execution = 44066 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,884 | INFO     | . stage-out = 5 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,884 | INFO     | . log creation = 0 s
[2025-11-24 20:29:56] 2025-11-25 01:29:20,884 | INFO     | ..............................
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | 
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | job summary report
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | --------------------------------------------------
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | PanDA job id: 6895355197
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | task id: 47556137
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | errors: (none)
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | pilot state: finished 
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | transexitcode: 0
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | exeerrorcode: 0
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | exeerrordiag: 
[2025-11-24 20:29:56] 2025-11-25 01:29:21,047 | INFO     | exitcode: 0
[2025-11-24 20:29:56] 2025-11-25 01:29:21,051 | INFO     | exitmsg: OK
[2025-11-24 20:29:56] 2025-11-25 01:29:21,051 | INFO     | cpuconsumptiontime: 142118 s
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | nevents: 1000
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | neventsw: 0
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | pid: 1046653
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | pgrp: 1046653
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | corecount: 8
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | event service: False
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | sizes: {0: 2284309, 11: 2284309, 22: 2284337, 29: 2284627, 33: 2284655, 44110: 2331161, 44115: 2340155, 44116: 2340211, 44149: 2340457}
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | --------------------------------------------------
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | 
[2025-11-24 20:29:56] 2025-11-25 01:29:21,052 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-24 20:29:56] 2025-11-25 01:29:21,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:29:56] 2025-11-25 01:29:21,172 | INFO     | job 6895355197 has completed (purged errors)
[2025-11-24 20:29:56] 2025-11-25 01:29:21,173 | INFO     | overall cleanup function is called
[2025-11-24 20:29:56] 2025-11-25 01:29:22,199 | INFO     | --- collectZombieJob: --- 10, [1046653]
[2025-11-24 20:29:56] 2025-11-25 01:29:22,199 | INFO     | zombie collector waiting for pid 1046653
[2025-11-24 20:29:56] 2025-11-25 01:29:22,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:29:56] 2025-11-25 01:29:22,200 | INFO     | collected zombie processes
[2025-11-24 20:29:56] 2025-11-25 01:29:22,200 | INFO     | will attempt to kill all subprocesses of pid=1046653
[2025-11-24 20:29:56] 2025-11-25 01:29:23,340 | INFO     | process IDs to be killed: [1046653] (in reverse order)
[2025-11-24 20:29:56] 2025-11-25 01:29:23,817 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:29:56] 2025-11-25 01:29:23,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:29:56] 2025-11-25 01:29:23,845 | INFO     | did not find any defunct processes belonging to 1046653
[2025-11-24 20:29:56] 2025-11-25 01:29:23,897 | INFO     | did not find any defunct processes belonging to 1046653
[2025-11-24 20:29:56] 2025-11-25 01:29:23,902 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:29:56] 2025-11-25 01:29:23,902 | INFO     | ready for new job
[2025-11-24 20:29:56] 2025-11-25 01:29:23,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:29:56] 2025-11-25 01:29:23,908 | INFO     | ***************************************
[2025-11-24 20:29:56] 2025-11-25 01:29:23,908 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:29:56] 2025-11-25 01:29:23,908 | INFO     | ***************************************
[2025-11-24 20:29:56] 2025-11-25 01:29:23,908 | INFO     | 
[2025-11-24 20:29:56] 2025-11-25 01:29:23,919 | INFO     | architecture information:
[2025-11-24 20:29:56] 2025-11-25 01:29:23,924 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:29:56] 2025-11-25 01:29:24,007 | INFO     | cat /etc/os-release:
[2025-11-24 20:29:56] NAME="CentOS Linux"
[2025-11-24 20:29:56] VERSION="7 (Core)"
[2025-11-24 20:29:56] ID="centos"
[2025-11-24 20:29:56] ID_LIKE="rhel fedora"
[2025-11-24 20:29:56] VERSION_ID="7"
[2025-11-24 20:29:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:29:56] ANSI_COLOR="0;31"
[2025-11-24 20:29:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:29:56] HOME_URL="https://www.centos.org/"
[2025-11-24 20:29:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:29:56] 
[2025-11-24 20:29:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:29:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:29:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:29:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:29:56] 
[2025-11-24 20:29:56] 2025-11-25 01:29:24,007 | INFO     | ***************************************
[2025-11-24 20:29:56] 2025-11-25 01:29:24,510 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-24 20:29:56] 2025-11-25 01:29:24,553 | INFO     | sufficient remaining disk space (61961404416 B)
[2025-11-24 20:29:56] 2025-11-25 01:29:24,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:29:56] 2025-11-25 01:29:24,553 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:29:56] 2025-11-25 01:29:24,553 | INFO     | update_server=False
[2025-11-24 20:29:56] 2025-11-25 01:29:24,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:29:56] 2025-11-25 01:29:24,711 | INFO     | all payload control threads have been joined
[2025-11-24 20:29:56] 2025-11-25 01:29:24,781 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 20:29:56] 2025-11-25 01:29:24,782 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 20:29:56] 2025-11-25 01:29:24,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:29:56] 2025-11-25 01:29:24,782 | INFO     | will abort loop
[2025-11-24 20:29:56] 2025-11-25 01:29:25,341 | INFO     | all job control threads have been joined
[2025-11-24 20:29:56] 2025-11-25 01:29:25,540 | INFO     | all data control threads have been joined
[2025-11-24 20:29:56] 2025-11-25 01:29:25,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:29:56] 2025-11-25 01:29:25,561 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:25,723 | INFO     | [payload] control thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:25,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:29:56] 2025-11-25 01:29:25,741 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:25,787 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:25,851 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:26,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:29:56] 2025-11-25 01:29:26,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:26,346 | INFO     | [job] control thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:26,425 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:26,540 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:26,546 | INFO     | [data] control thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:26,749 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:27,025 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:27,034 | INFO     | [job] validate thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:27,089 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:27,561 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:29,763 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:29:56] 2025-11-25 01:29:46,827 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:29:56] 2025-11-25 01:29:47,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139637841610560)>', '<ExcThread(monitor, started 139637364352768)>']
[2025-11-24 20:29:56] 2025-11-25 01:29:52,105 | INFO     | all workflow threads have been joined
[2025-11-24 20:29:56] 2025-11-25 01:29:52,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:29:56] 2025-11-25 01:29:52,105 | INFO     | traces error code: 0
[2025-11-24 20:29:56] 2025-11-25 01:29:52,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:29:56] 2025-11-25 01:29:54,736 | INFO     | PID=1028545 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 20:29:56] 2025-11-25 01:29:54,736 | INFO     | .. there are 79 such processes running
[2025-11-24 20:29:56] 2025-11-25 01:29:54,740 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:29:56] 2025-11-25 01:29:54,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:29:56] 2025-11-25 01:29:54,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:29:56] 2025-11-25 01:29:54,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:29:56] 2025-11-25 01:29:54,740 | INFO     | [monitor] control thread has ended
[2025-11-24 20:29:56] 2025-11-25 01:29:55,036 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:29:56] 2025-11-25 01:29:55,075 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:29:56] 2025-11-25 01:29:55,116 [wrapper] pilotpid: 1028545
[2025-11-24 20:29:56] 2025-11-25 01:29:55,166 [wrapper] Pilot exit status: 0
[2025-11-24 20:29:56] 2025-11-25 01:29:55,245 [wrapper] pandaids: 6895355197
[2025-11-24 20:29:56] 2025-11-25 01:29:55,555 [wrapper] cleanup supervisor_pilot 2754827 1028546
[2025-11-24 20:29:56] 2025-11-25 01:29:55,594 [wrapper] Test setup, not cleaning
[2025-11-24 20:29:56] 2025-11-25 01:29:55,621 [wrapper] apfmon messages muted
[2025-11-24 20:29:56] 2025-11-25 01:29:55,661 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:29:56] 2025-11-25 01:29:55,708 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:29:56]  *** Error codes and diagnostics ***
[2025-11-24 20:29:56]     "exeErrorCode": 0,
[2025-11-24 20:29:56]     "exeErrorDiag": "",
[2025-11-24 20:29:56]     "pilotErrorCode": 0,
[2025-11-24 20:29:56]     "pilotErrorDiag": "",
[2025-11-24 20:29:56]  *** Listing of results directory ***
[2025-11-24 20:29:56] total 1320960
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 01:48 pilot3.tar.gz
[2025-11-24 20:29:56] -rwx------. 1 boincer umatlas     36292 Nov 23 01:54 runpilot2-wrapper.sh
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 01:54 queuedata.json
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas       100 Nov 24 08:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:29:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 08:11 run_atlas
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas       105 Nov 24 08:11 job.xml
[2025-11-24 20:29:56] -rw-r--r--. 2 boincer umatlas 409832733 Nov 24 08:11 EVNT.47483658._000649.pool.root.1
[2025-11-24 20:29:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 08:11 start_atlas.sh
[2025-11-24 20:29:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 08:11 shared
[2025-11-24 20:29:56] -rw-r--r--. 2 boincer umatlas    590092 Nov 24 08:11 input.tar.gz
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas         0 Nov 24 08:11 boinc_lockfile
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 08:11 pandaJob.out
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas        57 Nov 24 08:11 setup.sh.local
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas    988279 Nov 24 08:12 agis_schedconf.cvmfs.json
[2025-11-24 20:29:56] drwx------. 5 boincer umatlas      4096 Nov 24 08:12 pilot3
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas       532 Nov 24 20:01 boinc_task_state.xml
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas      7171 Nov 24 20:21 init_data.xml
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas 923183434 Nov 24 20:27 HITS.47556137._006442.pool.root.1
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas      1071 Nov 24 20:28 memory_monitor_summary.json
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas   1516227 Nov 24 20:28 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas   1938484 Nov 24 20:28 log.47556137._006442.job.log.tgz.1
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas      8605 Nov 24 20:29 heartbeat.json
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 20:29 boinc_mmap_file
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas        29 Nov 24 20:29 wrapper_checkpoint.txt
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas        95 Nov 24 20:29 pilot_heartbeat.json
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas       823 Nov 24 20:29 pilotlog.txt
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas   5930755 Nov 24 20:29 log.47556137._006442.job.log.1
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas       353 Nov 24 20:29 output.list
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas       620 Nov 24 20:29 runtime_log
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas   7884800 Nov 24 20:29 result.tar.gz
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas       660 Nov 24 20:29 VXKMDmSAJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhhKKDmoF7hKo.diag
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas      9338 Nov 24 20:29 runtime_log.err
[2025-11-24 20:29:56] -rw-r--r--. 1 boincer umatlas     21838 Nov 24 20:29 stderr.txt
[2025-11-24 20:29:56] HITS file was successfully produced:
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas 923183434 Nov 24 20:27 shared/HITS.pool.root.1
[2025-11-24 20:29:56]  *** Contents of shared directory: ***
[2025-11-24 20:29:56] total 1310080
[2025-11-24 20:29:56] -rw-r--r--. 2 boincer umatlas 409832733 Nov 24 08:11 ATLAS.root_0
[2025-11-24 20:29:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 08:11 start_atlas.sh
[2025-11-24 20:29:56] -rw-r--r--. 2 boincer umatlas    590092 Nov 24 08:11 input.tar.gz
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas 923183434 Nov 24 20:27 HITS.pool.root.1
[2025-11-24 20:29:56] -rw-------. 1 boincer umatlas   7884800 Nov 24 20:29 result.tar.gz
20:29:57 (1021692): run_atlas exited; CPU time 142928.210204
20:29:57 (1021692): called boinc_finish(0)

</stderr_txt>
]]>

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