Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:39:47 (1481601): wrapper (7.7.26015): starting
22:39:47 (1481601): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 22:39:47] Arguments: --nthreads 6
[2025-11-24 22:39:47] Threads: 6
[2025-11-24 22:39:47] Checking for CVMFS
[2025-11-24 22:39:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:39:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:39:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:39:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:39:48] 2.13.3.0 900246 2661 76460 153247 0 81 18456958 20971521 916 130560 0 1989303 99.989 93671 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-24 22:39:48] CVMFS is ok
[2025-11-24 22:39:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:39:48] Checking for apptainer binary...
[2025-11-24 22:39:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:39:48] Running /usr/bin/apptainer --version
[2025-11-24 22:39:48] apptainer version 1.4.4-1.el9
[2025-11-24 22:39:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:39:48] testio005
[2025-11-24 22:39:48] apptainer works
[2025-11-24 22:39:48] Set ATHENA_PROC_NUMBER=6
[2025-11-24 22:39:48] Set ATHENA_CORE_NUMBER=6
[2025-11-24 22:39:48] Starting ATLAS job with PandaID=6895365206
[2025-11-24 22:39:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:08:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:08:31] 2025-11-25 00:07:48,303 | INFO     | extracted standard info from prmon json
[2025-11-25 09:08:31] 2025-11-25 00:07:48,303 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:08:31] 2025-11-25 00:07:48,303 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:08:31] 2025-11-25 00:07:48,312 | INFO     | fitting pss+swap vs Time
[2025-11-25 09:08:31] 2025-11-25 00:07:48,313 | INFO     | sum of square deviations: 72480148219.98546
[2025-11-25 09:08:31] 2025-11-25 00:07:48,320 | INFO     | sum of deviations: 540294235709.2347
[2025-11-25 09:08:31] 2025-11-25 00:07:48,321 | INFO     | mean x: 1764010406.5048702
[2025-11-25 09:08:31] 2025-11-25 00:07:48,321 | INFO     | mean y: 2694374.922077922
[2025-11-25 09:08:31] 2025-11-25 00:07:48,321 | INFO     | intersect: -13146901449.205729
[2025-11-25 09:08:31] 2025-11-25 00:07:48,321 | INFO     | chi2: 9.840135965640863
[2025-11-25 09:08:31] 2025-11-25 00:07:48,322 | INFO     | sum of square deviations: 70729493054.9854
[2025-11-25 09:08:31] 2025-11-25 00:07:48,330 | INFO     | sum of deviations: 723256346315.0708
[2025-11-25 09:08:31] 2025-11-25 00:07:48,330 | INFO     | mean x: 1764010254.00491
[2025-11-25 09:08:31] 2025-11-25 00:07:48,330 | INFO     | mean y: 2710308.309328969
[2025-11-25 09:08:31] 2025-11-25 00:07:48,330 | INFO     | intersect: -18035473708.958748
[2025-11-25 09:08:31] 2025-11-25 00:07:48,331 | INFO     | chi2: 6.97583445863237
[2025-11-25 09:08:31] 2025-11-25 00:07:48,331 | INFO     | current chi2=6.97583445863237 (change=29.108352943596227 %)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,332 | INFO     | sum of square deviations: 69007257027.48529
[2025-11-25 09:08:31] 2025-11-25 00:07:48,339 | INFO     | sum of deviations: 865176964190.3466
[2025-11-25 09:08:31] 2025-11-25 00:07:48,339 | INFO     | mean x: 1764010101.5049505
[2025-11-25 09:08:31] 2025-11-25 00:07:48,339 | INFO     | mean y: 2722850.884488449
[2025-11-25 09:08:31] 2025-11-25 00:07:48,340 | INFO     | intersect: -22113514921.22819
[2025-11-25 09:08:31] 2025-11-25 00:07:48,340 | INFO     | chi2: 4.868697534786731
[2025-11-25 09:08:31] 2025-11-25 00:07:48,340 | INFO     | current chi2=4.868697534786731 (change=30.206234628147243 %)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,341 | INFO     | sum of square deviations: 67313207574.98509
[2025-11-25 09:08:31] 2025-11-25 00:07:48,349 | INFO     | sum of deviations: 856779815776.123
[2025-11-25 09:08:31] 2025-11-25 00:07:48,349 | INFO     | mean x: 1764009949.0049918
[2025-11-25 09:08:31] 2025-11-25 00:07:48,349 | INFO     | mean y: 2722092.958402662
[2025-11-25 09:08:31] 2025-11-25 00:07:48,349 | INFO     | intersect: -22450050157.600624
[2025-11-25 09:08:31] 2025-11-25 00:07:48,350 | INFO     | chi2: 4.859091548017059
[2025-11-25 09:08:31] 2025-11-25 00:07:48,350 | INFO     | current chi2=4.859091548017059 (change=0.1973009557697551 %)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,350 | INFO     | right removable region: 600
[2025-11-25 09:08:31] 2025-11-25 00:07:48,351 | INFO     | sum of square deviations: 70729491224.9854
[2025-11-25 09:08:31] 2025-11-25 00:07:48,358 | INFO     | sum of deviations: 352081881672.34686
[2025-11-25 09:08:31] 2025-11-25 00:07:48,358 | INFO     | mean x: 1764010559.00491
[2025-11-25 09:08:31] 2025-11-25 00:07:48,358 | INFO     | mean y: 2710760.217675941
[2025-11-25 09:08:31] 2025-11-25 00:07:48,358 | INFO     | intersect: -8778296230.610786
[2025-11-25 09:08:31] 2025-11-25 00:07:48,359 | INFO     | chi2: 7.042816975941661
[2025-11-25 09:08:31] 2025-11-25 00:07:48,359 | INFO     | current chi2=7.042816975941661 (change=28.42764571004604 %)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,360 | INFO     | sum of square deviations: 69007253367.48529
[2025-11-25 09:08:31] 2025-11-25 00:07:48,367 | INFO     | sum of deviations: 202115633588.00024
[2025-11-25 09:08:31] 2025-11-25 00:07:48,368 | INFO     | mean x: 1764010711.5049505
[2025-11-25 09:08:31] 2025-11-25 00:07:48,368 | INFO     | mean y: 2724034.8333333335
[2025-11-25 09:08:31] 2025-11-25 00:07:48,368 | INFO     | intersect: -5163894330.821447
[2025-11-25 09:08:31] 2025-11-25 00:07:48,369 | INFO     | chi2: 5.381422975754677
[2025-11-25 09:08:31] 2025-11-25 00:07:48,369 | INFO     | current chi2=5.381422975754677 (change=23.58990736039747 %)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,369 | INFO     | left removable region: 20
[2025-11-25 09:08:31] 2025-11-25 00:07:48,369 | INFO     | sum of square deviations: 60500741482.98445
[2025-11-25 09:08:31] 2025-11-25 00:07:48,376 | INFO     | sum of deviations: 450240640730.4726
[2025-11-25 09:08:31] 2025-11-25 00:07:48,376 | INFO     | mean x: 1764010528.5051725
[2025-11-25 09:08:31] 2025-11-25 00:07:48,376 | INFO     | mean y: 2759447.175862069
[2025-11-25 09:08:31] 2025-11-25 00:07:48,377 | INFO     | intersect: -13124835539.95073
[2025-11-25 09:08:31] 2025-11-25 00:07:48,377 | INFO     | chi2: 0.12281489323811233
[2025-11-25 09:08:31] 2025-11-25 00:07:48,377 | INFO     | current memory leak: 7.44 B/s (using 580 data points, chi2=0.12)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,378 | INFO     | could have reported an average CPU frequency of 3295 MHz (23 samples)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,378 | INFO     | ..............................
[2025-11-25 09:08:31] 2025-11-25 00:07:48,378 | INFO     | . Timing measurements:
[2025-11-25 09:08:31] 2025-11-25 00:07:48,378 | INFO     | . get job = 0 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,378 | INFO     | . initial setup = 9 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,378 | INFO     | . payload setup = 6 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,379 | INFO     | . stage-in = 0 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,379 | INFO     | . payload execution = 37529 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,379 | INFO     | . stage-out = 7 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,379 | INFO     | . log creation = 0 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,379 | INFO     | ..............................
[2025-11-25 09:08:31] 2025-11-25 00:07:48,463 | INFO     | 
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | job summary report
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | --------------------------------------------------
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | PanDA job id: 6895365206
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | task id: 47556137
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | errors: (none)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | pilot state: finished 
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | transexitcode: 0
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | exeerrorcode: 0
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | exeerrordiag: 
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | exitcode: 0
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | exitmsg: OK
[2025-11-25 09:08:31] 2025-11-25 00:07:48,464 | INFO     | cpuconsumptiontime: 216868 s
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | nevents: 1000
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | neventsw: 0
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | pid: 1492068
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | pgrp: 1492068
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | corecount: 6
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | event service: False
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | sizes: {0: 2284309, 1: 2284309, 5: 2284599, 11: 2284655, 37540: 2326376, 37548: 2335370, 37550: 2335554, 37631: 2335800}
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | --------------------------------------------------
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | 
[2025-11-25 09:08:31] 2025-11-25 00:07:48,465 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-25 09:08:31] 2025-11-25 00:07:48,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:08:31] 2025-11-25 00:07:48,486 | INFO     | job 6895365206 has completed (purged errors)
[2025-11-25 09:08:31] 2025-11-25 00:07:48,486 | INFO     | overall cleanup function is called
[2025-11-25 09:08:31] 2025-11-25 00:07:49,503 | INFO     | --- collectZombieJob: --- 10, [1492068]
[2025-11-25 09:08:31] 2025-11-25 00:07:49,503 | INFO     | zombie collector waiting for pid 1492068
[2025-11-25 09:08:31] 2025-11-25 00:07:49,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:08:31] 2025-11-25 00:07:49,503 | INFO     | collected zombie processes
[2025-11-25 09:08:31] 2025-11-25 00:07:49,503 | INFO     | will attempt to kill all subprocesses of pid=1492068
[2025-11-25 09:08:31] 2025-11-25 00:07:49,599 | INFO     | process IDs to be killed: [1492068] (in reverse order)
[2025-11-25 09:08:31] 2025-11-25 00:07:49,640 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:08:31] 2025-11-25 00:07:49,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:08:31] 2025-11-25 00:07:49,643 | INFO     | did not find any defunct processes belonging to 1492068
[2025-11-25 09:08:31] 2025-11-25 00:07:49,647 | INFO     | did not find any defunct processes belonging to 1492068
[2025-11-25 09:08:31] 2025-11-25 00:07:49,648 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:08:31] 2025-11-25 00:07:49,648 | INFO     | ready for new job
[2025-11-25 09:08:31] 2025-11-25 00:07:49,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:08:31] 2025-11-25 00:07:49,651 | INFO     | ***************************************
[2025-11-25 09:08:31] 2025-11-25 00:07:49,651 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:08:31] 2025-11-25 00:07:49,651 | INFO     | ***************************************
[2025-11-25 09:08:31] 2025-11-25 00:07:49,651 | INFO     | 
[2025-11-25 09:08:31] 2025-11-25 00:07:49,652 | INFO     | architecture information:
[2025-11-25 09:08:31] 2025-11-25 00:07:49,652 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:08:31] 2025-11-25 00:07:49,666 | INFO     | cat /etc/os-release:
[2025-11-25 09:08:31] NAME="CentOS Linux"
[2025-11-25 09:08:31] VERSION="7 (Core)"
[2025-11-25 09:08:31] ID="centos"
[2025-11-25 09:08:31] ID_LIKE="rhel fedora"
[2025-11-25 09:08:31] VERSION_ID="7"
[2025-11-25 09:08:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:08:31] ANSI_COLOR="0;31"
[2025-11-25 09:08:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:08:31] HOME_URL="https://www.centos.org/"
[2025-11-25 09:08:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:08:31] 
[2025-11-25 09:08:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:08:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:08:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:08:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:08:31] 
[2025-11-25 09:08:31] 2025-11-25 00:07:49,667 | INFO     | ***************************************
[2025-11-25 09:08:31] 2025-11-25 00:07:50,169 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-25 09:08:31] 2025-11-25 00:07:50,184 | INFO     | sufficient remaining disk space (91933900800 B)
[2025-11-25 09:08:31] 2025-11-25 00:07:50,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:08:31] 2025-11-25 00:07:50,185 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:08:31] 2025-11-25 00:07:50,185 | INFO     | update_server=False
[2025-11-25 09:08:31] 2025-11-25 00:07:50,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:08:31] 2025-11-25 00:07:50,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:08:31] 2025-11-25 00:07:50,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:08:31] 2025-11-25 00:07:50,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:08:31] 2025-11-25 00:07:50,964 | INFO     | all job control threads have been joined
[2025-11-25 09:08:31] 2025-11-25 00:07:51,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:08:31] 2025-11-25 00:07:51,090 | INFO     | aborting loop
[2025-11-25 09:08:31] 2025-11-25 00:07:51,178 | INFO     | all data control threads have been joined
[2025-11-25 09:08:31] 2025-11-25 00:07:51,190 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:51,190 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:51,246 | INFO     | all payload control threads have been joined
[2025-11-25 09:08:31] 2025-11-25 00:07:51,969 | INFO     | [job] control thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,091 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,104 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,183 | INFO     | [data] control thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,251 | INFO     | [payload] control thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,252 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,434 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,439 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,446 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,525 | INFO     | [job] validate thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,634 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:52,791 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:07:54,191 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:08:31] 2025-11-25 00:08:20,655 | INFO     | PID=1485371 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 09:08:31] 2025-11-25 00:08:20,656 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:08:31] 2025-11-25 00:08:20,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:08:31] 2025-11-25 00:08:20,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:08:31] 2025-11-25 00:08:24,733 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:08:31] 2025-11-25 00:08:26,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140142034536256)>', '<ExcThread(monitor, started 140141528069888)>']
[2025-11-25 09:08:31] 2025-11-25 00:08:26,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:08:31] 2025-11-25 00:08:26,687 | INFO     | [monitor] control thread has ended
[2025-11-25 09:08:31] 2025-11-25 00:08:31,451 | INFO     | all workflow threads have been joined
[2025-11-25 09:08:31] 2025-11-25 00:08:31,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:08:31] 2025-11-25 00:08:31,452 | INFO     | traces error code: 0
[2025-11-25 09:08:31] 2025-11-25 00:08:31,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:08:31] 2025-11-25 00:08:31,571 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:08:31] 2025-11-25 00:08:31,574 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:08:31] 2025-11-25 00:08:31,576 [wrapper] pilotpid: 1485371
[2025-11-25 09:08:31] 2025-11-25 00:08:31,579 [wrapper] Pilot exit status: 0
[2025-11-25 09:08:31] 2025-11-25 00:08:31,589 [wrapper] pandaids: 6895365206
[2025-11-25 09:08:31] 2025-11-25 00:08:31,616 [wrapper] cleanup supervisor_pilot 1556448 1485372
[2025-11-25 09:08:31] 2025-11-25 00:08:31,619 [wrapper] Test setup, not cleaning
[2025-11-25 09:08:31] 2025-11-25 00:08:31,622 [wrapper] apfmon messages muted
[2025-11-25 09:08:31] 2025-11-25 00:08:31,624 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:08:31] 2025-11-25 00:08:31,627 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:08:31]  *** Error codes and diagnostics ***
[2025-11-25 09:08:31]     "exeErrorCode": 0,
[2025-11-25 09:08:31]     "exeErrorDiag": "",
[2025-11-25 09:08:31]     "pilotErrorCode": 0,
[2025-11-25 09:08:31]     "pilotErrorDiag": "",
[2025-11-25 09:08:31]  *** Listing of results directory ***
[2025-11-25 09:08:31] total 1308576
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc    576529 Nov 24 02:07 pilot3.tar.gz
[2025-11-25 09:08:31] -rwx------. 1 boinc boinc     36292 Nov 24 02:07 runpilot2-wrapper.sh
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc      5112 Nov 24 02:07 queuedata.json
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:08:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:39 run_atlas
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:39 job.xml
[2025-11-25 09:08:31] -rw-r--r--. 2 boinc boinc 408600904 Nov 24 22:39 EVNT.47483658._000819.pool.root.1
[2025-11-25 09:08:31] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:39 start_atlas.sh
[2025-11-25 09:08:31] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:39 shared
[2025-11-25 09:08:31] -rw-r--r--. 2 boinc boinc    590093 Nov 24 22:39 input.tar.gz
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:39 boinc_lockfile
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc      2785 Nov 24 22:39 pandaJob.out
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc    988280 Nov 24 22:40 agis_schedconf.cvmfs.json
[2025-11-25 09:08:31] drwx------. 5 boinc boinc      4096 Nov 24 22:40 pilot3
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc      9372 Nov 25 07:05 init_data.xml
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc       532 Nov 25 08:56 boinc_task_state.xml
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc 913892786 Nov 25 09:05 HITS.47556137._008052.pool.root.1
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc      1034 Nov 25 09:06 memory_monitor_summary.json
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc   1516227 Nov 25 09:06 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc   1649563 Nov 25 09:06 log.47556137._008052.job.log.tgz.1
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc      8577 Nov 25 09:07 heartbeat.json
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc      8192 Nov 25 09:08 boinc_mmap_file
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc        29 Nov 25 09:08 wrapper_checkpoint.txt
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc        95 Nov 25 09:08 pilot_heartbeat.json
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc      4748 Nov 25 09:08 pilotlog.txt
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc   5139975 Nov 25 09:08 log.47556137._008052.job.log.1
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc       353 Nov 25 09:08 output.list
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc       620 Nov 25 09:08 runtime_log
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc   6809600 Nov 25 09:08 result.tar.gz
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc      8776 Nov 25 09:08 runtime_log.err
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc       651 Nov 25 09:08 nTiLDmEkSh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmy2KKDm1qAOsn.diag
[2025-11-25 09:08:31] -rw-r--r--. 1 boinc boinc     20792 Nov 25 09:08 stderr.txt
[2025-11-25 09:08:31] HITS file was successfully produced:
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc 913892786 Nov 25 09:05 shared/HITS.pool.root.1
[2025-11-25 09:08:31]  *** Contents of shared directory: ***
[2025-11-25 09:08:31] total 1298752
[2025-11-25 09:08:31] -rw-r--r--. 2 boinc boinc 408600904 Nov 24 22:39 ATLAS.root_0
[2025-11-25 09:08:31] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:39 start_atlas.sh
[2025-11-25 09:08:31] -rw-r--r--. 2 boinc boinc    590093 Nov 24 22:39 input.tar.gz
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc 913892786 Nov 25 09:05 HITS.pool.root.1
[2025-11-25 09:08:31] -rw-------. 1 boinc boinc   6809600 Nov 25 09:08 result.tar.gz
09:08:33 (1481601): run_atlas exited; CPU time 216809.657527
09:08:33 (1481601): called boinc_finish(0)

</stderr_txt>
]]>

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