Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:55:15 (957638): wrapper (7.7.26015): starting
08:55:15 (957638): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:55:15] Arguments: --nthreads 8
[2025-11-24 08:55:15] Threads: 8
[2025-11-24 08:55:15] Checking for CVMFS
[2025-11-24 08:55:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:55:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:55:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:55:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:55:16] 2.13.3.0 9582 27235 238632 153247 1 815 32780035 40960000 47663 16776704 0 329678117 99.730 220810753 48707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 08:55:16] CVMFS is ok
[2025-11-24 08:55:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:55:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:55:16] Further information can be found at the LHC@home message board.
[2025-11-24 08:55:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:55:16] Checking for apptainer binary...
[2025-11-24 08:55:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:55:16] Running /usr/bin/apptainer --version
[2025-11-24 08:55:16] apptainer version 1.4.4-1.el9
[2025-11-24 08:55:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:55:17] c8-7-4.aglt2.org
[2025-11-24 08:55:17] apptainer works
[2025-11-24 08:55:17] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:55:17] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:55:17] Starting ATLAS job with PandaID=6893869910
[2025-11-24 08:55:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:10:51]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:10:51] 2025-11-25 01:10:03,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:10:51] 2025-11-25 01:10:04,469 | INFO     | time since job start (40425s) is within the limit (172800.0s)
[2025-11-24 20:10:51] 2025-11-25 01:10:05,705 | INFO     | monitor loop #2337: job 0:6893869910 is in state 'finished'
[2025-11-24 20:10:51] 2025-11-25 01:10:05,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:10:51] 2025-11-25 01:10:06,509 | INFO     | time since job start (40427s) is within the limit (172800.0s)
[2025-11-24 20:10:51] 2025-11-25 01:10:08,218 | INFO     | monitor loop #2338: job 0:6893869910 is in state 'finished'
[2025-11-24 20:10:51] 2025-11-25 01:10:08,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:10:51] 2025-11-25 01:10:08,521 | INFO     | time since job start (40429s) is within the limit (172800.0s)
[2025-11-24 20:10:51] 2025-11-25 01:10:10,537 | INFO     | time since job start (40431s) is within the limit (172800.0s)
[2025-11-24 20:10:51] 2025-11-25 01:10:10,734 | INFO     | monitor loop #2339: job 0:6893869910 is in state 'finished'
[2025-11-24 20:10:51] 2025-11-25 01:10:10,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:10:51] 2025-11-25 01:10:12,547 | INFO     | time since job start (40433s) is within the limit (172800.0s)
[2025-11-24 20:10:51] 2025-11-25 01:10:13,241 | INFO     | monitor loop #2340: job 0:6893869910 is in state 'finished'
[2025-11-24 20:10:51] 2025-11-25 01:10:13,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:10:51] 2025-11-25 01:10:14,554 | INFO     | time since job start (40435s) is within the limit (172800.0s)
[2025-11-24 20:10:51] 2025-11-25 01:10:15,748 | INFO     | monitor loop #2341: job 0:6893869910 is in state 'finished'
[2025-11-24 20:10:51] 2025-11-25 01:10:15,748 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:10:51] 2025-11-25 01:10:15,863 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 20:10:51] 2025-11-25 01:10:15,941 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9977109375013
[2025-11-24 20:10:51] 2025-11-25 01:10:16,109 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6893869910/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,110 | INFO     | extracted standard info from prmon json
[2025-11-24 20:10:51] 2025-11-25 01:10:16,110 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:10:51] 2025-11-25 01:10:16,110 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:10:51] 2025-11-25 01:10:16,124 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:10:51] 2025-11-25 01:10:16,124 | INFO     | sum of square deviations: 89556014793.13153
[2025-11-24 20:10:51] 2025-11-25 01:10:16,134 | INFO     | sum of deviations: 1910081570150.4631
[2025-11-24 20:10:51] 2025-11-25 01:10:16,134 | INFO     | mean x: 1764012824.635401
[2025-11-24 20:10:51] 2025-11-25 01:10:16,134 | INFO     | mean y: 2850658.4417549167
[2025-11-24 20:10:51] 2025-11-25 01:10:16,134 | INFO     | intersect: -37620623249.23771
[2025-11-24 20:10:51] 2025-11-25 01:10:16,134 | INFO     | chi2: 22.53836022585961
[2025-11-24 20:10:51] 2025-11-25 01:10:16,135 | INFO     | sum of square deviations: 87539450854.65712
[2025-11-24 20:10:51] 2025-11-25 01:10:16,144 | INFO     | sum of deviations: 2140856005039.6123
[2025-11-24 20:10:51] 2025-11-25 01:10:16,144 | INFO     | mean x: 1764012672.1478658
[2025-11-24 20:10:51] 2025-11-25 01:10:16,144 | INFO     | mean y: 2868107.900914634
[2025-11-24 20:10:51] 2025-11-25 01:10:16,145 | INFO     | intersect: -43137648370.822464
[2025-11-24 20:10:51] 2025-11-25 01:10:16,145 | INFO     | chi2: 18.89916964282902
[2025-11-24 20:10:51] 2025-11-25 01:10:16,145 | INFO     | current chi2=18.89916964282902 (change=16.14665195942307 %)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,145 | INFO     | right removable region: 655
[2025-11-24 20:10:51] 2025-11-25 01:10:16,149 | INFO     | sum of square deviations: 87538791444.65706
[2025-11-24 20:10:51] 2025-11-25 01:10:16,159 | INFO     | sum of deviations: 1632587444429.7957
[2025-11-24 20:10:51] 2025-11-25 01:10:16,159 | INFO     | mean x: 1764012977.1478658
[2025-11-24 20:10:51] 2025-11-25 01:10:16,159 | INFO     | mean y: 2871636.1051829266
[2025-11-24 20:10:51] 2025-11-25 01:10:16,159 | INFO     | intersect: -32895748401.658714
[2025-11-24 20:10:51] 2025-11-25 01:10:16,159 | INFO     | chi2: 17.701383888910026
[2025-11-24 20:10:51] 2025-11-25 01:10:16,159 | INFO     | current chi2=17.701383888910026 (change=21.461083630209398 %)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,160 | INFO     | left removable region: 10
[2025-11-24 20:10:51] 2025-11-25 01:10:16,160 | INFO     | sum of square deviations: 83208766865.27737
[2025-11-24 20:10:51] 2025-11-25 01:10:16,169 | INFO     | sum of deviations: 1678215773582.1055
[2025-11-24 20:10:51] 2025-11-25 01:10:16,169 | INFO     | mean x: 1764012946.675969
[2025-11-24 20:10:51] 2025-11-25 01:10:16,173 | INFO     | mean y: 2911853.8713178295
[2025-11-24 20:10:51] 2025-11-25 01:10:16,173 | INFO     | intersect: -35575002150.16399
[2025-11-24 20:10:51] 2025-11-25 01:10:16,174 | INFO     | chi2: 9.783173787818571
[2025-11-24 20:10:51] 2025-11-25 01:10:16,174 | INFO     | current memory leak: 20.17 B/s (using 645 data points, chi2=9.78)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | ..............................
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . Timing measurements:
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . get job = 0 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . initial setup = 4 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . payload setup = 32 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . stage-in = 0 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . payload execution = 40293 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . stage-out = 8 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | . log creation = 1 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,175 | INFO     | ..............................
[2025-11-24 20:10:51] 2025-11-25 01:10:16,278 | INFO     | 
[2025-11-24 20:10:51] 2025-11-25 01:10:16,289 | INFO     | job summary report
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | --------------------------------------------------
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | PanDA job id: 6893869910
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | task id: 47523449
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | errors: (none)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | pilot state: finished 
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | transexitcode: 0
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | exeerrorcode: 0
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | exeerrordiag: 
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | exitcode: 0
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | exitmsg: OK
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | cpuconsumptiontime: 140717 s
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | nevents: 1000
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | neventsw: 0
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | pid: 980631
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | pgrp: 980631
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | corecount: 8
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | event service: False
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 23: 2284365, 26: 2284655, 33: 2284683, 40332: 2328235, 40341: 2337285, 40381: 2337539}
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | --------------------------------------------------
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | 
[2025-11-24 20:10:51] 2025-11-25 01:10:16,290 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,417 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | job 6893869910 has completed (purged errors)
[2025-11-24 20:10:51] 2025-11-25 01:10:16,418 | INFO     | overall cleanup function is called
[2025-11-24 20:10:51] 2025-11-25 01:10:17,494 | INFO     | --- collectZombieJob: --- 10, [980631]
[2025-11-24 20:10:51] 2025-11-25 01:10:17,495 | INFO     | zombie collector waiting for pid 980631
[2025-11-24 20:10:51] 2025-11-25 01:10:17,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:10:51] 2025-11-25 01:10:17,495 | INFO     | collected zombie processes
[2025-11-24 20:10:51] 2025-11-25 01:10:17,495 | INFO     | will attempt to kill all subprocesses of pid=980631
[2025-11-24 20:10:51] 2025-11-25 01:10:20,495 | INFO     | process IDs to be killed: [980631] (in reverse order)
[2025-11-24 20:10:51] 2025-11-25 01:10:21,399 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:10:51] 2025-11-25 01:10:21,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:10:51] 2025-11-25 01:10:21,649 | INFO     | did not find any defunct processes belonging to 980631
[2025-11-24 20:10:51] 2025-11-25 01:10:21,742 | INFO     | did not find any defunct processes belonging to 980631
[2025-11-24 20:10:51] 2025-11-25 01:10:21,755 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:10:51] 2025-11-25 01:10:21,755 | INFO     | ready for new job
[2025-11-24 20:10:51] 2025-11-25 01:10:21,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:10:51] 2025-11-25 01:10:21,765 | INFO     | ***************************************
[2025-11-24 20:10:51] 2025-11-25 01:10:21,765 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:10:51] 2025-11-25 01:10:21,765 | INFO     | ***************************************
[2025-11-24 20:10:51] 2025-11-25 01:10:21,765 | INFO     | 
[2025-11-24 20:10:51] 2025-11-25 01:10:21,775 | INFO     | architecture information:
[2025-11-24 20:10:51] 2025-11-25 01:10:21,780 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:10:51] 2025-11-25 01:10:21,854 | INFO     | cat /etc/os-release:
[2025-11-24 20:10:51] NAME="CentOS Linux"
[2025-11-24 20:10:51] VERSION="7 (Core)"
[2025-11-24 20:10:51] ID="centos"
[2025-11-24 20:10:51] ID_LIKE="rhel fedora"
[2025-11-24 20:10:51] VERSION_ID="7"
[2025-11-24 20:10:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:10:51] ANSI_COLOR="0;31"
[2025-11-24 20:10:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:10:51] HOME_URL="https://www.centos.org/"
[2025-11-24 20:10:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:10:51] 
[2025-11-24 20:10:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:10:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:10:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:10:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:10:51] 
[2025-11-24 20:10:51] 2025-11-25 01:10:21,854 | INFO     | ***************************************
[2025-11-24 20:10:51] 2025-11-25 01:10:22,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-24 20:10:51] 2025-11-25 01:10:22,429 | INFO     | sufficient remaining disk space (157813833728 B)
[2025-11-24 20:10:51] 2025-11-25 01:10:22,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:10:51] 2025-11-25 01:10:22,439 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:10:51] 2025-11-25 01:10:22,439 | INFO     | update_server=False
[2025-11-24 20:10:51] 2025-11-25 01:10:22,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:10:51] 2025-11-25 01:10:22,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:10:51] 2025-11-25 01:10:22,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:10:51] 2025-11-25 01:10:22,444 | INFO     | aborting loop
[2025-11-24 20:10:51] 2025-11-25 01:10:22,578 | INFO     | all job control threads have been joined
[2025-11-24 20:10:51] 2025-11-25 01:10:22,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:10:51] 2025-11-25 01:10:23,240 | INFO     | all data control threads have been joined
[2025-11-24 20:10:51] 2025-11-25 01:10:23,444 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,456 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,528 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,584 | INFO     | [job] control thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,616 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,640 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,665 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:23,797 | INFO     | all payload control threads have been joined
[2025-11-24 20:10:51] 2025-11-25 01:10:23,819 | INFO     | [job] validate thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:24,199 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:24,223 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:24,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:24,249 | INFO     | [data] control thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:24,448 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:24,809 | INFO     | [payload] control thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:25,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:10:51] 2025-11-25 01:10:26,361 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:26,779 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:10:51] 2025-11-25 01:10:30,063 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:10:51] 2025-11-25 01:10:32,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328201451328)>', '<ExcThread(monitor, started 140327671273216)>']
[2025-11-24 20:10:51] 2025-11-25 01:10:37,101 | INFO     | all workflow threads have been joined
[2025-11-24 20:10:51] 2025-11-25 01:10:37,102 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:10:51] 2025-11-25 01:10:37,109 | INFO     | traces error code: 0
[2025-11-24 20:10:51] 2025-11-25 01:10:37,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:10:51] 2025-11-25 01:10:49,122 | INFO     | PID=964783 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 20:10:51] 2025-11-25 01:10:49,123 | INFO     | .. there are 82 such processes running
[2025-11-24 20:10:51] 2025-11-25 01:10:49,123 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:10:51] 2025-11-25 01:10:49,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:10:51] 2025-11-25 01:10:49,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:10:51] 2025-11-25 01:10:49,123 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:10:51] 2025-11-25 01:10:49,123 | INFO     | [monitor] control thread has ended
[2025-11-24 20:10:51] 2025-11-25 01:10:50,057 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:10:51] 2025-11-25 01:10:50,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:10:51] 2025-11-25 01:10:50,111 [wrapper] pilotpid: 964783
[2025-11-24 20:10:51] 2025-11-25 01:10:50,129 [wrapper] Pilot exit status: 0
[2025-11-24 20:10:51] 2025-11-25 01:10:50,276 [wrapper] pandaids: 6893869910
[2025-11-24 20:10:51] 2025-11-25 01:10:50,525 [wrapper] cleanup supervisor_pilot 3335172 964784
[2025-11-24 20:10:51] 2025-11-25 01:10:50,547 [wrapper] Test setup, not cleaning
[2025-11-24 20:10:51] 2025-11-25 01:10:50,613 [wrapper] apfmon messages muted
[2025-11-24 20:10:51] 2025-11-25 01:10:50,656 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:10:51] 2025-11-25 01:10:50,695 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:10:51]  *** Error codes and diagnostics ***
[2025-11-24 20:10:51]     "exeErrorCode": 0,
[2025-11-24 20:10:51]     "exeErrorDiag": "",
[2025-11-24 20:10:51]     "pilotErrorCode": 0,
[2025-11-24 20:10:51]     "pilotErrorDiag": "",
[2025-11-24 20:10:51]  *** Listing of results directory ***
[2025-11-24 20:10:51] total 1321468
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-24 20:10:51] -rwx------. 1 boincer umatlas     36292 Nov 20 09:47 runpilot2-wrapper.sh
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:48 queuedata.json
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas       100 Nov 24 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:10:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 08:55 run_atlas
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas       105 Nov 24 08:55 job.xml
[2025-11-24 20:10:51] -rw-r--r--. 2 boincer umatlas 410893075 Nov 24 08:55 EVNT.47493127._000644.pool.root.1
[2025-11-24 20:10:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 08:55 shared
[2025-11-24 20:10:51] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 08:55 input.tar.gz
[2025-11-24 20:10:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 08:55 start_atlas.sh
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas         0 Nov 24 08:55 boinc_lockfile
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 08:55 pandaJob.out
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas      2071 Nov 24 08:55 stderr.txt
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas        57 Nov 24 08:55 setup.sh.local
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas    988280 Nov 24 08:56 agis_schedconf.cvmfs.json
[2025-11-24 20:10:51] drwx------. 5 boincer umatlas      4096 Nov 24 08:56 pilot3
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas       533 Nov 24 19:53 boinc_task_state.xml
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas      7173 Nov 24 20:03 init_data.xml
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas 924610573 Nov 24 20:08 HITS.47523449._006434.pool.root.1
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas      1078 Nov 24 20:09 memory_monitor_summary.json
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas   1516227 Nov 24 20:09 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas   1885356 Nov 24 20:09 log.47523449._006434.job.log.tgz.1
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas        95 Nov 24 20:10 pilot_heartbeat.json
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas      8644 Nov 24 20:10 heartbeat.json
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas       822 Nov 24 20:10 pilotlog.txt
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 20:10 boinc_mmap_file
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas        29 Nov 24 20:10 wrapper_checkpoint.txt
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas   5008938 Nov 24 20:10 log.47523449._006434.job.log.1
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas       353 Nov 24 20:10 output.list
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas       620 Nov 24 20:10 runtime_log
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas   6912000 Nov 24 20:10 result.tar.gz
[2025-11-24 20:10:51] -rw-r--r--. 1 boincer umatlas      9333 Nov 24 20:10 runtime_log.err
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas       664 Nov 24 20:10 oaMKDmB8Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm08HKDmNK1t0n.diag
[2025-11-24 20:10:51] HITS file was successfully produced:
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas 924610573 Nov 24 20:08 shared/HITS.pool.root.1
[2025-11-24 20:10:51]  *** Contents of shared directory: ***
[2025-11-24 20:10:51] total 1311560
[2025-11-24 20:10:51] -rw-r--r--. 2 boincer umatlas 410893075 Nov 24 08:55 ATLAS.root_0
[2025-11-24 20:10:51] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 08:55 input.tar.gz
[2025-11-24 20:10:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 08:55 start_atlas.sh
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas 924610573 Nov 24 20:08 HITS.pool.root.1
[2025-11-24 20:10:51] -rw-------. 1 boincer umatlas   6912000 Nov 24 20:10 result.tar.gz
20:10:53 (957638): run_atlas exited; CPU time 141318.214503
20:10:53 (957638): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN