Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:19:24 (2717402): wrapper (7.7.26015): starting
02:19:24 (2717402): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 02:19:24] Arguments: --nthreads 4
[2025-11-25 02:19:24] Threads: 4
[2025-11-25 02:19:24] Checking for CVMFS
[2025-11-25 02:19:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:19:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:19:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:19:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:19:25] 2.13.3.0 7129 12313 49908 153274 2 100 2828002 4096001 2272 130560 3 6313062 99.955 595743 976 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 02:19:25] CVMFS is ok
[2025-11-25 02:19:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:19:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 02:19:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 02:19:25] Further information can be found at the LHC@home message board.
[2025-11-25 02:19:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:19:25] Checking for apptainer binary...
[2025-11-25 02:19:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:19:25] Running /usr/bin/apptainer --version
[2025-11-25 02:19:25] apptainer version 1.4.4
[2025-11-25 02:19:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:19:25] T7810-Ubuntu
[2025-11-25 02:19:25] apptainer works
[2025-11-25 02:19:25] Set ATHENA_PROC_NUMBER=4
[2025-11-25 02:19:25] Set ATHENA_CORE_NUMBER=4
[2025-11-25 02:19:25] Starting ATLAS job with PandaID=6895348330
[2025-11-25 02:19:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:48:45]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:48:45] 2025-11-26 01:48:11,509 | INFO     | time since job start (66513s) is within the limit (172800.0s)
[2025-11-25 20:48:45] 2025-11-26 01:48:12,069 | INFO     | monitor loop #4814: job 0:6895348330 is in state 'finished'
[2025-11-25 20:48:45] 2025-11-26 01:48:12,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,033 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 20:48:45] 2025-11-26 01:48:13,046 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2750.3168250000003
[2025-11-25 20:48:45] 2025-11-26 01:48:13,060 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/16/PanDA_Pilot-6895348330/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,061 | INFO     | extracted standard info from prmon json
[2025-11-25 20:48:45] 2025-11-26 01:48:13,061 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:48:45] 2025-11-26 01:48:13,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:48:45] 2025-11-26 01:48:13,080 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:48:45] 2025-11-26 01:48:13,082 | INFO     | sum of square deviations: 401566571092.5
[2025-11-25 20:48:45] 2025-11-26 01:48:13,113 | INFO     | sum of deviations: 863274462448.0002
[2025-11-25 20:48:45] 2025-11-26 01:48:13,113 | INFO     | mean x: 1764088420.5
[2025-11-25 20:48:45] 2025-11-26 01:48:13,113 | INFO     | mean y: 2266971.6935779816
[2025-11-25 20:48:45] 2025-11-26 01:48:13,114 | INFO     | intersect: -3790111658.765391
[2025-11-25 20:48:45] 2025-11-26 01:48:13,115 | INFO     | chi2: 5.328176917725987
[2025-11-25 20:48:45] 2025-11-26 01:48:13,116 | INFO     | sum of square deviations: 396065733070.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,147 | INFO     | sum of deviations: 1132525403847.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,147 | INFO     | mean x: 1764088268.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,147 | INFO     | mean y: 2274438.1474654377
[2025-11-25 20:48:45] 2025-11-26 01:48:13,148 | INFO     | intersect: -5042026573.839739
[2025-11-25 20:48:45] 2025-11-26 01:48:13,149 | INFO     | chi2: 2.6537336959743594
[2025-11-25 20:48:45] 2025-11-26 01:48:13,149 | INFO     | current chi2=2.6537336959743594 (change=50.194339697208356 %)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,150 | INFO     | sum of square deviations: 390615361110.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,181 | INFO     | sum of deviations: 1173116184307.5
[2025-11-25 20:48:45] 2025-11-26 01:48:13,181 | INFO     | mean x: 1764088115.5
[2025-11-25 20:48:45] 2025-11-26 01:48:13,181 | INFO     | mean y: 2275571.189814815
[2025-11-25 20:48:45] 2025-11-26 01:48:13,181 | INFO     | intersect: -5295724776.151334
[2025-11-25 20:48:45] 2025-11-26 01:48:13,183 | INFO     | chi2: 2.5050676932657603
[2025-11-25 20:48:45] 2025-11-26 01:48:13,183 | INFO     | current chi2=2.5050676932657603 (change=5.602144741732047 %)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,183 | INFO     | right removable region: 1079
[2025-11-25 20:48:45] 2025-11-26 01:48:13,184 | INFO     | sum of square deviations: 396065733070.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,215 | INFO     | sum of deviations: 611890137887.0002
[2025-11-25 20:48:45] 2025-11-26 01:48:13,215 | INFO     | mean x: 1764088573.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,215 | INFO     | mean y: 2273935.3594470047
[2025-11-25 20:48:45] 2025-11-26 01:48:13,215 | INFO     | intersect: -2723102965.6184397
[2025-11-25 20:48:45] 2025-11-26 01:48:13,217 | INFO     | chi2: 2.9474239831682154
[2025-11-25 20:48:45] 2025-11-26 01:48:13,217 | INFO     | current chi2=2.9474239831682154 (change=44.68231763546345 %)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,218 | INFO     | sum of square deviations: 390615361110.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,234 | INFO     | sum of deviations: 578645630248.4999
[2025-11-25 20:48:45] 2025-11-26 01:48:13,234 | INFO     | mean x: 1764088725.5
[2025-11-25 20:48:45] 2025-11-26 01:48:13,234 | INFO     | mean y: 2274865.0805555554
[2025-11-25 20:48:45] 2025-11-26 01:48:13,234 | INFO     | intersect: -2610992133.63781
[2025-11-25 20:48:45] 2025-11-26 01:48:13,235 | INFO     | chi2: 2.92630714252326
[2025-11-25 20:48:45] 2025-11-26 01:48:13,235 | INFO     | current chi2=2.92630714252326 (change=0.7164507300458639 %)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,235 | INFO     | left removable region: 20
[2025-11-25 20:48:45] 2025-11-26 01:48:13,236 | INFO     | sum of square deviations: 368269639810.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,254 | INFO     | sum of deviations: 851264326289.9994
[2025-11-25 20:48:45] 2025-11-26 01:48:13,254 | INFO     | mean x: 1764088695.0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,254 | INFO     | mean y: 2284585.1671388103
[2025-11-25 20:48:45] 2025-11-26 01:48:13,255 | INFO     | intersect: -4075449803.2547493
[2025-11-25 20:48:45] 2025-11-26 01:48:13,256 | INFO     | chi2: 0.08547808332874299
[2025-11-25 20:48:45] 2025-11-26 01:48:13,256 | INFO     | current memory leak: 2.31 B/s (using 1059 data points, chi2=0.09)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,257 | INFO     | could have reported an average CPU frequency of 2734 MHz (40 samples)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | ..............................
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . Timing measurements:
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . get job = 0 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . initial setup = 3 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . payload setup = 6 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . stage-in = 0 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . payload execution = 66477 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . stage-out = 4 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | . log creation = 0 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,258 | INFO     | ..............................
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | 
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | job summary report
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | --------------------------------------------------
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | PanDA job id: 6895348330
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | task id: 47556137
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | errors: (none)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,363 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | pilot state: finished 
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | transexitcode: 0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | exeerrorcode: 0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | exeerrordiag: 
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | exitcode: 0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | exitmsg: OK
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | cpuconsumptiontime: 264921 s
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | nevents: 1000
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | neventsw: 0
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | pid: 2728403
[2025-11-25 20:48:45] 2025-11-26 01:48:13,364 | INFO     | pgrp: 2728403
[2025-11-25 20:48:45] 2025-11-26 01:48:13,365 | INFO     | corecount: 4
[2025-11-25 20:48:45] 2025-11-26 01:48:13,365 | INFO     | event service: False
[2025-11-25 20:48:45] 2025-11-26 01:48:13,365 | INFO     | sizes: {0: 2284267, 5: 2284529, 11: 2284585, 66488: 2340049, 66492: 2349078, 66493: 2349134, 66499: 2349508}
[2025-11-25 20:48:45] 2025-11-26 01:48:13,365 | INFO     | --------------------------------------------------
[2025-11-25 20:48:45] 2025-11-26 01:48:13,365 | INFO     | 
[2025-11-25 20:48:45] 2025-11-26 01:48:13,365 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/16
[2025-11-25 20:48:45] 2025-11-26 01:48:13,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,385 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:48:45] 2025-11-26 01:48:13,387 | INFO     | job 6895348330 has completed (purged errors)
[2025-11-25 20:48:45] 2025-11-26 01:48:13,387 | INFO     | overall cleanup function is called
[2025-11-25 20:48:45] 2025-11-26 01:48:14,400 | INFO     | --- collectZombieJob: --- 10, [2728403]
[2025-11-25 20:48:45] 2025-11-26 01:48:14,401 | INFO     | zombie collector waiting for pid 2728403
[2025-11-25 20:48:45] 2025-11-26 01:48:14,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:48:45] 2025-11-26 01:48:14,401 | INFO     | collected zombie processes
[2025-11-25 20:48:45] 2025-11-26 01:48:14,401 | INFO     | will attempt to kill all subprocesses of pid=2728403
[2025-11-25 20:48:45] 2025-11-26 01:48:14,738 | INFO     | process IDs to be killed: [2728403] (in reverse order)
[2025-11-25 20:48:45] 2025-11-26 01:48:14,833 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:48:45] 2025-11-26 01:48:14,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:48:45] 2025-11-26 01:48:14,841 | INFO     | did not find any defunct processes belonging to 2728403
[2025-11-25 20:48:45] 2025-11-26 01:48:14,846 | INFO     | did not find any defunct processes belonging to 2728403
[2025-11-25 20:48:45] 2025-11-26 01:48:14,847 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:48:45] 2025-11-26 01:48:14,847 | INFO     | ready for new job
[2025-11-25 20:48:45] 2025-11-26 01:48:14,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:48:45] 2025-11-26 01:48:14,851 | INFO     | ***************************************
[2025-11-25 20:48:45] 2025-11-26 01:48:14,851 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:48:45] 2025-11-26 01:48:14,851 | INFO     | ***************************************
[2025-11-25 20:48:45] 2025-11-26 01:48:14,851 | INFO     | 
[2025-11-25 20:48:45] 2025-11-26 01:48:14,854 | INFO     | architecture information:
[2025-11-25 20:48:45] 2025-11-26 01:48:14,854 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:48:45] 2025-11-26 01:48:14,870 | INFO     | cat /etc/os-release:
[2025-11-25 20:48:45] NAME="CentOS Linux"
[2025-11-25 20:48:45] VERSION="7 (Core)"
[2025-11-25 20:48:45] ID="centos"
[2025-11-25 20:48:45] ID_LIKE="rhel fedora"
[2025-11-25 20:48:45] VERSION_ID="7"
[2025-11-25 20:48:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:48:45] ANSI_COLOR="0;31"
[2025-11-25 20:48:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:48:45] HOME_URL="https://www.centos.org/"
[2025-11-25 20:48:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:48:45] 
[2025-11-25 20:48:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:48:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:48:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:48:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:48:45] 
[2025-11-25 20:48:45] 2025-11-26 01:48:14,871 | INFO     | ***************************************
[2025-11-25 20:48:45] 2025-11-26 01:48:15,373 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/16
[2025-11-25 20:48:45] 2025-11-26 01:48:15,390 | INFO     | sufficient remaining disk space (242659360768 B)
[2025-11-25 20:48:45] 2025-11-26 01:48:15,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:48:45] 2025-11-26 01:48:15,390 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:48:45] 2025-11-26 01:48:15,390 | INFO     | update_server=False
[2025-11-25 20:48:45] 2025-11-26 01:48:15,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:48:45] 2025-11-26 01:48:15,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:48:45] 2025-11-26 01:48:15,587 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:48:45] 2025-11-26 01:48:15,588 | INFO     | aborting loop
[2025-11-25 20:48:45] 2025-11-26 01:48:15,701 | INFO     | all payload control threads have been joined
[2025-11-25 20:48:45] 2025-11-26 01:48:16,396 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:16,426 | INFO     | all job control threads have been joined
[2025-11-25 20:48:45] 2025-11-26 01:48:16,484 | INFO     | all data control threads have been joined
[2025-11-25 20:48:45] 2025-11-26 01:48:16,587 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:16,593 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:16,707 | INFO     | [payload] control thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:16,907 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,005 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,126 | INFO     | [job] validate thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:48:45] 2025-11-26 01:48:17,176 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,286 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,397 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,426 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,430 | INFO     | [job] control thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,489 | INFO     | [data] control thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:17,786 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:18,374 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:48:45] 2025-11-26 01:48:19,378 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:21,151 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:48:45] 2025-11-26 01:48:25,360 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:48:45] 2025-11-26 01:48:26,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131433307596608)>', '<ExcThread(monitor, started 131432819181312)>']
[2025-11-25 20:48:45] 2025-11-26 01:48:31,177 | INFO     | all workflow threads have been joined
[2025-11-25 20:48:45] 2025-11-26 01:48:31,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:48:45] 2025-11-26 01:48:31,178 | INFO     | traces error code: 0
[2025-11-25 20:48:45] 2025-11-26 01:48:31,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:48:45] 2025-11-26 01:48:44,929 | INFO     | PID=2721432 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:48:45] 2025-11-26 01:48:44,930 | INFO     | .. there are 3 such processes running
[2025-11-25 20:48:45] 2025-11-26 01:48:44,931 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:48:45] 2025-11-26 01:48:44,931 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:48:45] 2025-11-26 01:48:44,931 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:48:45] 2025-11-26 01:48:44,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:48:45] 2025-11-26 01:48:44,931 | INFO     | [monitor] control thread has ended
[2025-11-25 20:48:45] 2025-11-26 01:48:45,093 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:48:45] 2025-11-26 01:48:45,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:48:45] 2025-11-26 01:48:45,099 [wrapper] pilotpid: 2721432
[2025-11-25 20:48:45] 2025-11-26 01:48:45,102 [wrapper] Pilot exit status: 0
[2025-11-25 20:48:45] 2025-11-26 01:48:45,113 [wrapper] pandaids: 6895348330
[2025-11-25 20:48:45] 2025-11-26 01:48:45,170 [wrapper] cleanup supervisor_pilot 3092730 2721433
[2025-11-25 20:48:45] 2025-11-26 01:48:45,174 [wrapper] Test setup, not cleaning
[2025-11-25 20:48:45] 2025-11-26 01:48:45,176 [wrapper] apfmon messages muted
[2025-11-25 20:48:45] 2025-11-26 01:48:45,181 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:48:45] 2025-11-26 01:48:45,190 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:48:45]  *** Error codes and diagnostics ***
[2025-11-25 20:48:45]     "exeErrorCode": 0,
[2025-11-25 20:48:45]     "exeErrorDiag": "",
[2025-11-25 20:48:45]     "pilotErrorCode": 0,
[2025-11-25 20:48:45]     "pilotErrorDiag": "",
[2025-11-25 20:48:45]  *** Listing of results directory ***
[2025-11-25 20:48:45] total 1318872
[2025-11-25 20:48:45] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 22 14:25 pilot3.tar.gz
[2025-11-25 20:48:45] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 22 14:37 queuedata.json
[2025-11-25 20:48:45] -rwx------ 1 whitlerd whitlerd     36292 Nov 22 14:38 runpilot2-wrapper.sh
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 25 02:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:48:45] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 25 02:19 run_atlas
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 25 02:19 job.xml
[2025-11-25 20:48:45] -rw-r--r-- 2 whitlerd whitlerd 409643552 Nov 25 02:19 EVNT.47483658._000477.pool.root.1
[2025-11-25 20:48:45] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 25 02:19 start_atlas.sh
[2025-11-25 20:48:45] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 25 02:19 shared
[2025-11-25 20:48:45] -rw-r--r-- 2 whitlerd whitlerd    590105 Nov 25 02:19 input.tar.gz
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 25 02:19 boinc_setup_complete
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd      9104 Nov 25 02:19 init_data.xml
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 25 02:19 boinc_lockfile
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd      2781 Nov 25 02:19 pandaJob.out
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd    991801 Nov 25 02:19 agis_schedconf.cvmfs.json
[2025-11-25 20:48:45] drwx------ 5 whitlerd whitlerd      4096 Nov 25 02:19 pilot3
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 25 20:39 boinc_task_state.xml
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd 914558491 Nov 25 20:47 HITS.47556137._004721.pool.root.1
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd      1052 Nov 25 20:47 memory_monitor_summary.json
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd   1516240 Nov 25 20:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd   1801993 Nov 25 20:48 log.47556137._004721.job.log.tgz.1
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd      8626 Nov 25 20:48 heartbeat.json
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 25 20:48 wrapper_checkpoint.txt
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd       822 Nov 25 20:48 pilotlog.txt
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd        95 Nov 25 20:48 pilot_heartbeat.json
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 25 20:48 boinc_mmap_file
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd   9400437 Nov 25 20:48 log.47556137._004721.job.log.1
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd       353 Nov 25 20:48 output.list
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 25 20:48 runtime_log
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd  11223040 Nov 25 20:48 result.tar.gz
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd       662 Nov 25 20:48 uKuLDmYc8g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyLKKDmSejqHn.diag
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd      9037 Nov 25 20:48 runtime_log.err
[2025-11-25 20:48:45] -rw-rw-r-- 1 whitlerd whitlerd     21375 Nov 25 20:48 stderr.txt
[2025-11-25 20:48:45] HITS file was successfully produced:
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd 914558491 Nov 25 20:47 shared/HITS.pool.root.1
[2025-11-25 20:48:45]  *** Contents of shared directory: ***
[2025-11-25 20:48:45] total 1304732
[2025-11-25 20:48:45] -rw-r--r-- 2 whitlerd whitlerd 409643552 Nov 25 02:19 ATLAS.root_0
[2025-11-25 20:48:45] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 25 02:19 start_atlas.sh
[2025-11-25 20:48:45] -rw-r--r-- 2 whitlerd whitlerd    590105 Nov 25 02:19 input.tar.gz
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd 914558491 Nov 25 20:47 HITS.pool.root.1
[2025-11-25 20:48:45] -rw------- 1 whitlerd whitlerd  11223040 Nov 25 20:48 result.tar.gz
20:48:46 (2717402): run_atlas exited; CPU time 267034.125695
20:48:46 (2717402): called boinc_finish(0)

</stderr_txt>
]]>

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