Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 19:31:52 (276926): vboxwrapper version 26210
2025-11-24 19:31:52 (276926): BOINC client version: 8.2.6
2025-11-24 19:31:52 (276926): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-24 19:31:53 (276926): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 19:31:53 (276926): Create VM. (boinc_25fa6b82aec90829, slot#4)
2025-11-24 19:31:53 (276926): Setting Memory Size for VM. (4800MB)
2025-11-24 19:31:53 (276926): Setting CPU Count for VM. (8)
2025-11-24 19:31:53 (276926): Setting Chipset Options for VM.
2025-11-24 19:31:53 (276926): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 19:31:53 (276926): Setting Boot Options for VM.
2025-11-24 19:31:53 (276926): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 19:31:53 (276926): Enabling VM Network Access.
2025-11-24 19:31:54 (276926): Disabling USB Support for VM.
2025-11-24 19:31:54 (276926): Disabling COM Port Support for VM.
2025-11-24 19:31:54 (276926): Disabling LPT Port Support for VM.
2025-11-24 19:31:54 (276926): Disabling Audio Support for VM.
2025-11-24 19:31:54 (276926): Disabling Clipboard Support for VM.
2025-11-24 19:31:54 (276926): Disabling Drag and Drop Support for VM.
2025-11-24 19:31:54 (276926): Adding storage controller(s) to VM.
2025-11-24 19:31:54 (276926): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 19:31:54 (276926): Adding VirtualBox Guest Additions to VM.
2025-11-24 19:31:55 (276926): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 19:31:55 (276926): forwarding host port 40705 to guest port 80
2025-11-24 19:31:55 (276926): Enabling remote desktop for VM.
2025-11-24 19:31:55 (276926): Enabling shared directory for VM.
2025-11-24 19:31:55 (276926): Starting VM using VBoxManage interface. (boinc_25fa6b82aec90829, slot#4)
2025-11-24 19:31:56 (276926): Successfully started VM. (PID = '277544')
2025-11-24 19:31:56 (276926): Reporting VM Process ID to BOINC.
2025-11-24 19:31:56 (276926): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-24 19:31:56 (276926): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 19:31:56 (276926): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 19:31:56 (276926): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 19:31:56 (276926): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 19:31:56 (276926): Detected: Web Application Enabled (http://localhost:40705)
2025-11-24 19:31:56 (276926): Detected: Remote Desktop Enabled (localhost:60389)
2025-11-24 19:31:56 (276926): Preference change detected
2025-11-24 19:31:56 (276926): Setting CPU throttle for VM. (100%)
2025-11-24 19:31:56 (276926): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 19:31:58 (276926): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 19:31:58 (276926): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 19:32:01 (276926): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 19:32:01 (276926): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 19:32:01 (276926): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 19:32:08 (276926): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 19:32:08 (276926): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 19:32:12 (276926): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000082 main     Log opened 2025-11-24T18:32:09.712076000Z
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000143 main     OS Product: Linux
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000154 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000164 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000174 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000174 main     Process ID: 1371
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000174 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 19:32:12 (276926): Guest Log: 00:00:00.000496 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 19:32:12 (276926): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 19:32:12 (276926): Guest Log: [INFO] Mounting shared directory
2025-11-24 19:32:12 (276926): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 19:32:15 (276926): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 19:32:15 (276926): Guest Log: [INFO] Detected branch: prod
2025-11-24 19:32:15 (276926): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 19:32:15 (276926): Guest Log: Copying input files
2025-11-24 19:32:16 (276926): Guest Log: Copied input files into RunAtlas.
2025-11-24 19:32:16 (276926): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 19:32:16 (276926): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 19:32:16 (276926): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 19:32:16 (276926): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 19:32:47 (276926): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 19:32:47 (276926): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 19:32:47 (276926): Guest Log: 2.6.3.0 1646 0 30160 153255 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 19:32:47 (276926): Guest Log: copied the webapp to /var/www
2025-11-24 19:32:47 (276926): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-24 19:32:47 (276926): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-24 19:32:48 (276926): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 19:32:48 (276926): Guest Log:  *** Starting ATLAS job. (PandaID=6895380004 taskID=47556137) ***
2025-11-24 21:10:57 (276926): Status Report: Elapsed Time: '6000.000000'
2025-11-24 21:10:57 (276926): Status Report: CPU Time: '49092.360000'
2025-11-24 22:49:57 (276926): Status Report: Elapsed Time: '12000.000000'
2025-11-24 22:49:57 (276926): Status Report: CPU Time: '99441.480000'
2025-11-24 23:24:36 (276926): Guest Log:  *** Job finished ***
2025-11-24 23:24:36 (276926): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:23:32,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:23:36,800 | INFO     | [data] queue_monitor thread has finished
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:20,992 | INFO     | [monitor] cgroup control has ended
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:21,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651105982272)>', '<ExcThread(monitor, started 140650364262144)>']
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:22,079 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:22,079 | INFO     | [monitor] control thread has ended
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:26,966 | INFO     | all workflow threads have been joined
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:26,966 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:26,966 | INFO     | traces error code: 0
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:26,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,034 [wrapper] ==== pilot stdout END ====
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,041 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,045 [wrapper] pilotpid: 6059
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,051 [wrapper] Pilot exit status: 0
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,071 [wrapper] pandaids: 6895380004
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,096 [wrapper] cleanup supervisor_pilot 15402 6060
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,099 [wrapper] Test setup, not cleaning
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,102 [wrapper] apfmon messages muted
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,105 [wrapper] ==== wrapper stdout END ====
2025-11-24 23:24:36 (276926): Guest Log: 2025-11-24 22:24:27,116 [wrapper] ==== wrapper stderr END ====
2025-11-24 23:24:36 (276926): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 23:24:36 (276926): Guest Log:     "exeErrorCode": 0,
2025-11-24 23:24:36 (276926): Guest Log:     "exeErrorDiag": "",
2025-11-24 23:24:36 (276926): Guest Log:     "pilotErrorCode": 0,
2025-11-24 23:24:36 (276926): Guest Log:     "pilotErrorDiag": "",
2025-11-24 23:24:36 (276926): Guest Log:  *** Listing of results directory ***
2025-11-24 23:24:36 (276926): Guest Log: total 909612
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 24 02:30 pilot3.tar.gz
2025-11-24 23:24:36 (276926): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 24 02:33 runpilot2-wrapper.sh
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 24 02:33 queuedata.json
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 24 18:32 start_atlas.sh
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas    590104 Nov 24 18:32 input.tar.gz
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas      9624 Nov 24 18:32 init_data.xml
2025-11-24 23:24:36 (276926): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 18:32 EVNT.47483658._000983.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 24 18:32 pandaJob.out
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 24 18:33 agis_schedconf.cvmfs.json
2025-11-24 23:24:36 (276926): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 18:33 pilot3
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas 920768391 Nov 24 22:22 HITS.47556137._009697.pool.root.1
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 22:23 pilot_heartbeat.json
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas      1049 Nov 24 22:23 memory_monitor_summary.json
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 22:23 agis_ddmendpoints.agis.ALL.json
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas   1552806 Nov 24 22:23 log.47556137._009697.job.log.tgz.1
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas      8629 Nov 24 22:23 heartbeat.json
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 24 22:24 pilotlog.txt
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas   1862378 Nov 24 22:24 log.47556137._009697.job.log.1
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 22:24 output.list
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 22:24 runtime_log
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas   3430400 Nov 24 22:24 result.tar.gz
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas       734 Nov 24 22:24 uxhLDm2Zbh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtsIKDm7nIrOn.diag
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 atlas atlas      8978 Nov 24 22:24 runtime_log.err
2025-11-24 23:24:36 (276926): Guest Log: Looking for outputfile HITS.47556137._009697.pool.root.1
2025-11-24 23:24:36 (276926): Guest Log: HITS file was successfully produced
2025-11-24 23:24:36 (276926): Guest Log: -rw-------. 1 atlas atlas 920768391 Nov 24 22:22 /home/atlas/RunAtlas/HITS.47556137._009697.pool.root.1
2025-11-24 23:24:36 (276926): Guest Log: Successfully finished the ATLAS job!
2025-11-24 23:24:36 (276926): Guest Log: Copying the results back to the shared directory!
2025-11-24 23:24:36 (276926): Guest Log:  *** Contents of shared directory: ***
2025-11-24 23:24:36 (276926): Guest Log: total 403556
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 root root 409180073 Nov 24 18:31 ATLAS.root_0
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 root root      9624 Nov 24 18:31 init_data.xml
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 root root    590104 Nov 24 18:31 input.tar.gz
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 root root   3430400 Nov 24  2025 result.tar.gz
2025-11-24 23:24:36 (276926): Guest Log: -rw-r--r--. 1 root root     15847 Nov 24 18:31 start_atlas.sh
2025-11-24 23:24:36 (276926): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 23:24:36 (276926): VM Completion File Detected.
2025-11-24 23:24:36 (276926): Powering off VM.
2025-11-24 23:24:36 (276926): Successfully stopped VM.
2025-11-24 23:24:36 (276926): Deregistering VM. (boinc_25fa6b82aec90829, slot#4)
2025-11-24 23:24:36 (276926): Removing network bandwidth throttle group from VM.
2025-11-24 23:24:36 (276926): Removing VM from VirtualBox.
2025-11-24 23:24:41 (276926): called boinc_finish(0)

</stderr_txt>
]]>

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