Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:58:49 (3874600): wrapper (7.7.26015): starting
14:58:49 (3874600): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:58:49] Arguments: --nthreads 8
[2025-11-24 14:58:49] Threads: 8
[2025-11-24 14:58:49] Checking for CVMFS
[2025-11-24 14:58:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:58:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:58:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:58:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:58:51] 2.13.2.0 12166 33412 294308 153257 3 576 40588007 40960001 21056 16776704 0 60193609 99.733 36448705 34206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:58:51] CVMFS is ok
[2025-11-24 14:58:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:58:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:58:51] Further information can be found at the LHC@home message board.
[2025-11-24 14:58:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:58:51] Checking for apptainer binary...
[2025-11-24 14:58:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:58:51] Running /usr/bin/apptainer --version
[2025-11-24 14:58:51] apptainer version 1.4.4-1.el9
[2025-11-24 14:58:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:58:52] c-211-33-1.aglt2.org
[2025-11-24 14:58:52] apptainer works
[2025-11-24 14:58:53] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:58:53] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:58:53] Starting ATLAS job with PandaID=6895365173
[2025-11-24 14:58:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:12:49]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:12:49] 2025-11-25 12:11:40,955 | INFO     | monitor loop #3459: job 0:6895365173 is in state 'finished'
[2025-11-25 07:12:49] 2025-11-25 12:11:40,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:49] 2025-11-25 12:11:41,175 | INFO     | time since job start (58307s) is within the limit (172800.0s)
[2025-11-25 07:12:49] 2025-11-25 12:11:43,182 | INFO     | time since job start (58309s) is within the limit (172800.0s)
[2025-11-25 07:12:49] 2025-11-25 12:11:43,488 | INFO     | monitor loop #3460: job 0:6895365173 is in state 'finished'
[2025-11-25 07:12:49] 2025-11-25 12:11:43,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:49] 2025-11-25 12:11:45,204 | INFO     | time since job start (58311s) is within the limit (172800.0s)
[2025-11-25 07:12:49] 2025-11-25 12:11:46,037 | INFO     | monitor loop #3461: job 0:6895365173 is in state 'finished'
[2025-11-25 07:12:49] 2025-11-25 12:11:46,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:49] 2025-11-25 12:11:47,211 | INFO     | time since job start (58313s) is within the limit (172800.0s)
[2025-11-25 07:12:49] 2025-11-25 12:11:48,568 | INFO     | monitor loop #3462: job 0:6895365173 is in state 'finished'
[2025-11-25 07:12:49] 2025-11-25 12:11:48,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:49] 2025-11-25 12:11:49,218 | INFO     | time since job start (58315s) is within the limit (172800.0s)
[2025-11-25 07:12:49] 2025-11-25 12:11:49,231 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 07:12:49] 2025-11-25 12:11:49,304 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2566.0481666666665
[2025-11-25 07:12:49] 2025-11-25 12:11:49,431 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895365173/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:12:49] 2025-11-25 12:11:49,432 | INFO     | extracted standard info from prmon json
[2025-11-25 07:12:49] 2025-11-25 12:11:49,432 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:12:49] 2025-11-25 12:11:49,432 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:12:49] 2025-11-25 12:11:49,536 | INFO     | fitting pss+swap vs Time
[2025-11-25 07:12:49] 2025-11-25 12:11:49,556 | INFO     | sum of square deviations: 268370403345.51324
[2025-11-25 07:12:49] 2025-11-25 12:11:49,666 | INFO     | sum of deviations: 1540126367058.5159
[2025-11-25 07:12:49] 2025-11-25 12:11:49,666 | INFO     | mean x: 1764043579.472193
[2025-11-25 07:12:49] 2025-11-25 12:11:49,666 | INFO     | mean y: 2854708.69884575
[2025-11-25 07:12:49] 2025-11-25 12:11:49,666 | INFO     | intersect: -10120653679.39864
[2025-11-25 07:12:49] 2025-11-25 12:11:49,668 | INFO     | chi2: 20.189874793825766
[2025-11-25 07:12:49] 2025-11-25 12:11:49,687 | INFO     | sum of square deviations: 264169231778.9146
[2025-11-25 07:12:49] 2025-11-25 12:11:49,931 | INFO     | sum of deviations: 1845591452633.3806
[2025-11-25 07:12:49] 2025-11-25 12:11:49,931 | INFO     | mean x: 1764043426.9905064
[2025-11-25 07:12:49] 2025-11-25 12:11:49,932 | INFO     | mean y: 2865792.7088607596
[2025-11-25 07:12:49] 2025-11-25 12:11:49,932 | INFO     | intersect: -12321444078.671242
[2025-11-25 07:12:49] 2025-11-25 12:11:49,933 | INFO     | chi2: 17.10477398677224
[2025-11-25 07:12:49] 2025-11-25 12:11:49,933 | INFO     | current chi2=17.10477398677224 (change=15.28043555771319 %)
[2025-11-25 07:12:49] 2025-11-25 12:11:49,933 | INFO     | right removable region: 947
[2025-11-25 07:12:49] 2025-11-25 12:11:49,943 | INFO     | sum of square deviations: 264166922219.9832
[2025-11-25 07:12:49] 2025-11-25 12:11:50,063 | INFO     | sum of deviations: 1176089921955.2756
[2025-11-25 07:12:49] 2025-11-25 12:11:50,068 | INFO     | mean x: 1764043731.9957807
[2025-11-25 07:12:49] 2025-11-25 12:11:50,068 | INFO     | mean y: 2867914.568565401
[2025-11-25 07:12:49] 2025-11-25 12:11:50,068 | INFO     | intersect: -7850780216.899388
[2025-11-25 07:12:49] 2025-11-25 12:11:50,069 | INFO     | chi2: 16.333767028509136
[2025-11-25 07:12:49] 2025-11-25 12:11:50,070 | INFO     | current chi2=16.333767028509136 (change=19.099215843061394 %)
[2025-11-25 07:12:49] 2025-11-25 12:11:50,070 | INFO     | left removable region: 10
[2025-11-25 07:12:49] 2025-11-25 12:11:50,071 | INFO     | sum of square deviations: 255076978912.4996
[2025-11-25 07:12:49] 2025-11-25 12:11:50,193 | INFO     | sum of deviations: 1265327315652.5093
[2025-11-25 07:12:49] 2025-11-25 12:11:50,194 | INFO     | mean x: 1764043701.5432231
[2025-11-25 07:12:49] 2025-11-25 12:11:50,194 | INFO     | mean y: 2891413.8516542157
[2025-11-25 07:12:49] 2025-11-25 12:11:50,194 | INFO     | intersect: -8747771586.328732
[2025-11-25 07:12:49] 2025-11-25 12:11:50,195 | INFO     | chi2: 10.596632743536409
[2025-11-25 07:12:49] 2025-11-25 12:11:50,196 | INFO     | current memory leak: 4.96 B/s (using 937 data points, chi2=10.60)
[2025-11-25 07:12:49] 2025-11-25 12:11:50,220 | INFO     | could have reported an average CPU frequency of 2635 MHz (35 samples)
[2025-11-25 07:12:49] 2025-11-25 12:11:50,220 | INFO     | ..............................
[2025-11-25 07:12:49] 2025-11-25 12:11:50,220 | INFO     | . Timing measurements:
[2025-11-25 07:12:49] 2025-11-25 12:11:50,220 | INFO     | . get job = 0 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,220 | INFO     | . initial setup = 6 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,220 | INFO     | . payload setup = 39 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,221 | INFO     | . stage-in = 0 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,221 | INFO     | . payload execution = 58144 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,221 | INFO     | . stage-out = 12 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,221 | INFO     | . log creation = 2 s
[2025-11-25 07:12:49] 2025-11-25 12:11:50,221 | INFO     | ..............................
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | 
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | job summary report
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | --------------------------------------------------
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | PanDA job id: 6895365173
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | task id: 47556137
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | errors: (none)
[2025-11-25 07:12:49] 2025-11-25 12:11:51,883 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | pilot state: finished 
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | transexitcode: 0
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | exeerrorcode: 0
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | exeerrordiag: 
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | exitcode: 0
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | exitmsg: OK
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | cpuconsumptiontime: 261412 s
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | nevents: 1000
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | neventsw: 0
[2025-11-25 07:12:49] 2025-11-25 12:11:51,884 | INFO     | pid: 3892286
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | pgrp: 3892286
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | corecount: 8
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | event service: False
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | sizes: {0: 2284139, 1: 2284167, 2: 2284338, 13: 2284366, 24: 2284422, 34: 2284712, 35: 2284868, 46: 2284896, 58188: 2336481, 58189: 2336480, 58203: 2345535, 58205:
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | --------------------------------------------------
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | 
[2025-11-25 07:12:49] 2025-11-25 12:11:51,885 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 07:12:49] 2025-11-25 12:11:52,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,062 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,062 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 07:12:49] 2025-11-25 12:11:52,064 | INFO     | job 6895365173 has completed (purged errors)
[2025-11-25 07:12:49] 2025-11-25 12:11:52,106 | INFO     | overall cleanup function is called
[2025-11-25 07:12:49] 2025-11-25 12:11:53,153 | INFO     | --- collectZombieJob: --- 10, [3892286]
[2025-11-25 07:12:49] 2025-11-25 12:11:53,154 | INFO     | zombie collector waiting for pid 3892286
[2025-11-25 07:12:49] 2025-11-25 12:11:53,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 07:12:49] 2025-11-25 12:11:53,154 | INFO     | collected zombie processes
[2025-11-25 07:12:49] 2025-11-25 12:11:53,154 | INFO     | will attempt to kill all subprocesses of pid=3892286
[2025-11-25 07:12:49] 2025-11-25 12:11:54,049 | INFO     | PID=3880927 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 07:12:49] 2025-11-25 12:11:54,049 | INFO     | .. there are 18 such processes running
[2025-11-25 07:12:49] 2025-11-25 12:11:54,531 | INFO     | process IDs to be killed: [3892286] (in reverse order)
[2025-11-25 07:12:49] 2025-11-25 12:11:55,370 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:12:49] 2025-11-25 12:11:55,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:12:49] 2025-11-25 12:11:55,402 | INFO     | did not find any defunct processes belonging to 3892286
[2025-11-25 07:12:49] 2025-11-25 12:11:55,428 | INFO     | did not find any defunct processes belonging to 3892286
[2025-11-25 07:12:49] 2025-11-25 12:11:55,433 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:12:49] 2025-11-25 12:11:55,434 | INFO     | ready for new job
[2025-11-25 07:12:49] 2025-11-25 12:11:55,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:12:49] 2025-11-25 12:11:55,447 | INFO     | ***************************************
[2025-11-25 07:12:49] 2025-11-25 12:11:55,451 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:12:49] 2025-11-25 12:11:55,451 | INFO     | ***************************************
[2025-11-25 07:12:49] 2025-11-25 12:11:55,451 | INFO     | 
[2025-11-25 07:12:49] 2025-11-25 12:11:55,461 | INFO     | architecture information:
[2025-11-25 07:12:49] 2025-11-25 12:11:55,477 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:12:49] 2025-11-25 12:11:55,562 | INFO     | cat /etc/os-release:
[2025-11-25 07:12:49] NAME="CentOS Linux"
[2025-11-25 07:12:49] VERSION="7 (Core)"
[2025-11-25 07:12:49] ID="centos"
[2025-11-25 07:12:49] ID_LIKE="rhel fedora"
[2025-11-25 07:12:49] VERSION_ID="7"
[2025-11-25 07:12:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:12:49] ANSI_COLOR="0;31"
[2025-11-25 07:12:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:12:49] HOME_URL="https://www.centos.org/"
[2025-11-25 07:12:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:12:49] 
[2025-11-25 07:12:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:12:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:12:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:12:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:12:49] 
[2025-11-25 07:12:49] 2025-11-25 12:11:55,563 | INFO     | ***************************************
[2025-11-25 07:12:49] 2025-11-25 12:11:56,066 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 07:12:49] 2025-11-25 12:11:56,140 | INFO     | sufficient remaining disk space (121796296704 B)
[2025-11-25 07:12:49] 2025-11-25 12:11:56,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:12:49] 2025-11-25 12:11:56,141 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:12:49] 2025-11-25 12:11:56,141 | INFO     | update_server=False
[2025-11-25 07:12:49] 2025-11-25 12:11:56,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:12:49] 2025-11-25 12:11:56,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:12:49] 2025-11-25 12:11:56,221 | INFO     | all job control threads have been joined
[2025-11-25 07:12:49] 2025-11-25 12:11:56,223 | INFO     | all payload control threads have been joined
[2025-11-25 07:12:49] 2025-11-25 12:11:56,294 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 07:12:49] 2025-11-25 12:11:56,294 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 07:12:49] 2025-11-25 12:11:56,294 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:12:49] 2025-11-25 12:11:56,294 | INFO     | will abort loop
[2025-11-25 07:12:49] 2025-11-25 12:11:56,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:12:49] 2025-11-25 12:11:57,106 | INFO     | all data control threads have been joined
[2025-11-25 07:12:49] 2025-11-25 12:11:57,157 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,182 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,182 | INFO     | [job] validate thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,227 | INFO     | [job] control thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,229 | INFO     | [payload] control thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,300 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,563 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:57,926 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:58,051 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:58,082 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:58,112 | INFO     | [data] control thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:58,223 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:58,348 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:58,491 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:11:59,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:12:49] 2025-11-25 12:12:03,357 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:12:49] 2025-11-25 12:12:27,677 | INFO     | PID=3880927 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 07:12:49] 2025-11-25 12:12:27,677 | INFO     | .. there are 18 such processes running
[2025-11-25 07:12:49] 2025-11-25 12:12:27,682 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:12:49] 2025-11-25 12:12:27,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:12:49] 2025-11-25 12:12:27,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:12:49] 2025-11-25 12:12:39,957 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:12:49] 2025-11-25 12:12:41,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139653682718528)>', '<ExcThread(monitor, started 139652673566464)>']
[2025-11-25 07:12:49] 2025-11-25 12:12:41,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:12:49] 2025-11-25 12:12:41,824 | INFO     | [monitor] control thread has ended
[2025-11-25 07:12:49] 2025-11-25 12:12:46,811 | INFO     | all workflow threads have been joined
[2025-11-25 07:12:49] 2025-11-25 12:12:46,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:12:49] 2025-11-25 12:12:46,811 | INFO     | traces error code: 0
[2025-11-25 07:12:49] 2025-11-25 12:12:46,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:12:49] 2025-11-25 12:12:47,469 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:12:49] 2025-11-25 12:12:47,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:12:49] 2025-11-25 12:12:47,534 [wrapper] pilotpid: 3880927
[2025-11-25 07:12:49] 2025-11-25 12:12:47,591 [wrapper] Pilot exit status: 0
[2025-11-25 07:12:49] 2025-11-25 12:12:47,746 [wrapper] pandaids: 6895365173
[2025-11-25 07:12:49] 2025-11-25 12:12:48,001 [wrapper] cleanup supervisor_pilot 1510140 3880928
[2025-11-25 07:12:49] 2025-11-25 12:12:48,010 [wrapper] Test setup, not cleaning
[2025-11-25 07:12:49] 2025-11-25 12:12:48,025 [wrapper] apfmon messages muted
[2025-11-25 07:12:49] 2025-11-25 12:12:48,049 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:12:49] 2025-11-25 12:12:48,090 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:12:49]  *** Error codes and diagnostics ***
[2025-11-25 07:12:49]     "exeErrorCode": 0,
[2025-11-25 07:12:49]     "exeErrorDiag": "",
[2025-11-25 07:12:49]     "pilotErrorCode": 0,
[2025-11-25 07:12:49]     "pilotErrorDiag": "",
[2025-11-25 07:12:49]  *** Listing of results directory ***
[2025-11-25 07:12:49] total 1324884
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 11:55 pilot3.tar.gz
[2025-11-25 07:12:49] -rwx------. 1 boincer umatlas     36292 Nov 23 12:01 runpilot2-wrapper.sh
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 12:01 queuedata.json
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas       100 Nov 24 14:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:12:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 14:58 run_atlas
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas       105 Nov 24 14:58 job.xml
[2025-11-25 07:12:49] -rw-r--r--. 2 boincer umatlas 411447959 Nov 24 14:58 EVNT.47483658._000815.pool.root.1
[2025-11-25 07:12:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 14:58 start_atlas.sh
[2025-11-25 07:12:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 14:58 shared
[2025-11-25 07:12:49] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 14:58 input.tar.gz
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas         0 Nov 24 14:58 boinc_lockfile
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 14:58 pandaJob.out
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas        57 Nov 24 14:58 setup.sh.local
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas    991801 Nov 24 14:59 agis_schedconf.cvmfs.json
[2025-11-25 07:12:49] drwx------. 5 boincer umatlas      4096 Nov 24 14:59 pilot3
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas       532 Nov 25 06:47 boinc_task_state.xml
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas 922444071 Nov 25 07:09 HITS.47556137._008019.pool.root.1
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas      6881 Nov 25 07:09 init_data.xml
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas      1069 Nov 25 07:10 memory_monitor_summary.json
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas   1516240 Nov 25 07:11 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas   2121339 Nov 25 07:11 log.47556137._008019.job.log.tgz.1
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas      8650 Nov 25 07:11 heartbeat.json
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas        95 Nov 25 07:12 pilot_heartbeat.json
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas        29 Nov 25 07:12 wrapper_checkpoint.txt
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas      5011 Nov 25 07:12 pilotlog.txt
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas   7310644 Nov 25 07:12 log.47556137._008019.job.log.1
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas       353 Nov 25 07:12 output.list
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas       620 Nov 25 07:12 runtime_log
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas   9451520 Nov 25 07:12 result.tar.gz
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas      9353 Nov 25 07:12 runtime_log.err
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas       664 Nov 25 07:12 5I3LDmddSh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBeIKDmZwnBLm.diag
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 07:12 boinc_mmap_file
[2025-11-25 07:12:49] -rw-r--r--. 1 boincer umatlas     21872 Nov 25 07:12 stderr.txt
[2025-11-25 07:12:49] HITS file was successfully produced:
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas 922444071 Nov 25 07:09 shared/HITS.pool.root.1
[2025-11-25 07:12:49]  *** Contents of shared directory: ***
[2025-11-25 07:12:49] total 1312472
[2025-11-25 07:12:49] -rw-r--r--. 2 boincer umatlas 411447959 Nov 24 14:58 ATLAS.root_0
[2025-11-25 07:12:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 14:58 start_atlas.sh
[2025-11-25 07:12:49] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 14:58 input.tar.gz
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas 922444071 Nov 25 07:09 HITS.pool.root.1
[2025-11-25 07:12:49] -rw-------. 1 boincer umatlas   9451520 Nov 25 07:12 result.tar.gz
07:12:50 (3874600): run_atlas exited; CPU time 262719.015657
07:12:50 (3874600): called boinc_finish(0)

</stderr_txt>
]]>

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