Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:27:11 (7540): wrapper (7.7.26015): starting
23:27:11 (7540): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:27:11] Arguments: --nthreads 8
[2025-11-26 23:27:11] Threads: 8
[2025-11-26 23:27:11] Checking for CVMFS
[2025-11-26 23:27:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:27:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:27:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:27:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:27:14] 2.11.2.0 32703 285795 140764 153337 3 84 17773017 25165825 1288 130560 11 139250000 99.876 77848526 2905 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:27:14] CVMFS is ok
[2025-11-26 23:27:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:27:14] Checking for apptainer binary...
[2025-11-26 23:27:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:27:14] Running /usr/bin/apptainer --version
[2025-11-26 23:27:14] apptainer version 1.3.2-1.el7
[2025-11-26 23:27:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:27:37] cg-vwn328.simple-grid.lan
[2025-11-26 23:27:37] apptainer works
[2025-11-26 23:27:37] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:27:37] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:27:37] Starting ATLAS job with PandaID=6895379555
[2025-11-26 23:27:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:55:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:55:10] 2025-11-27 21:54:22,355 | INFO     | time since job start (84168s) is within the limit (172800.0s)
[2025-11-27 22:55:10] 2025-11-27 21:54:23,554 | INFO     | PID=11320 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 22:55:10] 2025-11-27 21:54:23,554 | INFO     | .. there are 9 such processes running
[2025-11-27 22:55:10] 2025-11-27 21:54:24,034 | INFO     | monitor loop #5674: job 0:6895379555 is in state 'finished'
[2025-11-27 22:55:10] 2025-11-27 21:54:24,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:10] 2025-11-27 21:54:24,555 | INFO     | time since job start (84170s) is within the limit (172800.0s)
[2025-11-27 22:55:10] 2025-11-27 21:54:26,540 | INFO     | monitor loop #5675: job 0:6895379555 is in state 'finished'
[2025-11-27 22:55:10] 2025-11-27 21:54:26,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:10] 2025-11-27 21:54:26,565 | INFO     | time since job start (84172s) is within the limit (172800.0s)
[2025-11-27 22:55:10] 2025-11-27 21:54:28,572 | INFO     | time since job start (84174s) is within the limit (172800.0s)
[2025-11-27 22:55:10] 2025-11-27 21:54:29,047 | INFO     | monitor loop #5676: job 0:6895379555 is in state 'finished'
[2025-11-27 22:55:10] 2025-11-27 21:54:29,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:10] 2025-11-27 21:54:30,579 | INFO     | time since job start (84176s) is within the limit (172800.0s)
[2025-11-27 22:55:10] 2025-11-27 21:54:31,552 | INFO     | monitor loop #5677: job 0:6895379555 is in state 'finished'
[2025-11-27 22:55:10] 2025-11-27 21:54:31,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,585 | INFO     | time since job start (84178s) is within the limit (172800.0s)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,617 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:55:10] 2025-11-27 21:54:32,618 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 22:55:10] 2025-11-27 21:54:32,620 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895379555/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,621 | INFO     | extracted standard info from prmon json
[2025-11-27 22:55:10] 2025-11-27 21:54:32,621 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:55:10] 2025-11-27 21:54:32,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:55:10] 2025-11-27 21:54:32,645 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:55:10] 2025-11-27 21:54:32,647 | INFO     | sum of square deviations: 797332625798.5872
[2025-11-27 22:55:10] 2025-11-27 21:54:32,708 | INFO     | sum of deviations: 3300184349956.2783
[2025-11-27 22:55:10] 2025-11-27 21:54:32,708 | INFO     | mean x: 1764238580.5656934
[2025-11-27 22:55:10] 2025-11-27 21:54:32,708 | INFO     | mean y: 2836542.8357664235
[2025-11-27 22:55:10] 2025-11-27 21:54:32,709 | INFO     | intersect: -7299401400.005851
[2025-11-27 22:55:10] 2025-11-27 21:54:32,710 | INFO     | chi2: 22.47632442684635
[2025-11-27 22:55:10] 2025-11-27 21:54:32,712 | INFO     | sum of square deviations: 788634963820.3881
[2025-11-27 22:55:10] 2025-11-27 21:54:32,773 | INFO     | sum of deviations: 3748387514245.928
[2025-11-27 22:55:10] 2025-11-27 21:54:32,773 | INFO     | mean x: 1764238428.069597
[2025-11-27 22:55:10] 2025-11-27 21:54:32,773 | INFO     | mean y: 2844400.3164835167
[2025-11-27 22:55:10] 2025-11-27 21:54:32,774 | INFO     | intersect: -8382593222.044709
[2025-11-27 22:55:10] 2025-11-27 21:54:32,775 | INFO     | chi2: 19.33803113015961
[2025-11-27 22:55:10] 2025-11-27 21:54:32,775 | INFO     | current chi2=19.33803113015961 (change=13.962662386819238 %)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,775 | INFO     | right removable region: 1364
[2025-11-27 22:55:10] 2025-11-27 21:54:32,777 | INFO     | sum of square deviations: 788634073220.3889
[2025-11-27 22:55:10] 2025-11-27 21:54:32,839 | INFO     | sum of deviations: 2724584069033.419
[2025-11-27 22:55:10] 2025-11-27 21:54:32,840 | INFO     | mean x: 1764238733.069597
[2025-11-27 22:55:10] 2025-11-27 21:54:32,840 | INFO     | mean y: 2846633.67985348
[2025-11-27 22:55:10] 2025-11-27 21:54:32,840 | INFO     | intersect: -6092270112.2457695
[2025-11-27 22:55:10] 2025-11-27 21:54:32,842 | INFO     | chi2: 17.71112363682785
[2025-11-27 22:55:10] 2025-11-27 21:54:32,844 | INFO     | current chi2=17.71112363682785 (change=21.200978859011357 %)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,844 | INFO     | left removable region: 10
[2025-11-27 22:55:10] 2025-11-27 21:54:32,846 | INFO     | sum of square deviations: 769721482080.2024
[2025-11-27 22:55:10] 2025-11-27 21:54:32,929 | INFO     | sum of deviations: 2796160517060.4805
[2025-11-27 22:55:10] 2025-11-27 21:54:32,929 | INFO     | mean x: 1764238702.5782866
[2025-11-27 22:55:10] 2025-11-27 21:54:32,929 | INFO     | mean y: 2865259.53323486
[2025-11-27 22:55:10] 2025-11-27 21:54:32,930 | INFO     | intersect: -6406069293.634663
[2025-11-27 22:55:10] 2025-11-27 21:54:32,931 | INFO     | chi2: 10.253268721148826
[2025-11-27 22:55:10] 2025-11-27 21:54:32,931 | INFO     | current memory leak: 3.63 B/s (using 1354 data points, chi2=10.25)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,933 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 22:55:10] 2025-11-27 21:54:32,933 | INFO     | ..............................
[2025-11-27 22:55:10] 2025-11-27 21:54:32,933 | INFO     | . Timing measurements:
[2025-11-27 22:55:10] 2025-11-27 21:54:32,933 | INFO     | . get job = 0 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | . initial setup = 7 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | . payload setup = 161 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | . stage-in = 0 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | . payload execution = 83703 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | . stage-out = 5 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | . log creation = 2 s
[2025-11-27 22:55:10] 2025-11-27 21:54:32,934 | INFO     | ..............................
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | 
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | job summary report
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | --------------------------------------------------
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | PanDA job id: 6895379555
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | task id: 47556137
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | errors: (none)
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | pilot state: finished 
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | transexitcode: 0
[2025-11-27 22:55:10] 2025-11-27 21:54:33,045 | INFO     | exeerrorcode: 0
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | exeerrordiag: 
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | exitcode: 0
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | exitmsg: OK
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | cpuconsumptiontime: 315863 s
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | nevents: 1000
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | neventsw: 0
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | pid: 17890
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | pgrp: 17890
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | corecount: 8
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | event service: False
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 23: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 66: 2284616, 77: 2284644, 88: 2284700, 99: 2285008, 10
[2025-11-27 22:55:10] 2025-11-27 21:54:33,046 | INFO     | --------------------------------------------------
[2025-11-27 22:55:10] 2025-11-27 21:54:33,047 | INFO     | 
[2025-11-27 22:55:10] 2025-11-27 21:54:33,047 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 22:55:10] 2025-11-27 21:54:33,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:55:10] 2025-11-27 21:54:33,240 | INFO     | job 6895379555 has completed (purged errors)
[2025-11-27 22:55:10] 2025-11-27 21:54:33,241 | INFO     | overall cleanup function is called
[2025-11-27 22:55:10] 2025-11-27 21:54:34,257 | INFO     | --- collectZombieJob: --- 10, [17890]
[2025-11-27 22:55:10] 2025-11-27 21:54:34,257 | INFO     | zombie collector waiting for pid 17890
[2025-11-27 22:55:10] 2025-11-27 21:54:34,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:55:10] 2025-11-27 21:54:34,257 | INFO     | collected zombie processes
[2025-11-27 22:55:10] 2025-11-27 21:54:34,257 | INFO     | will attempt to kill all subprocesses of pid=17890
[2025-11-27 22:55:10] 2025-11-27 21:54:34,360 | INFO     | process IDs to be killed: [17890] (in reverse order)
[2025-11-27 22:55:10] 2025-11-27 21:54:34,575 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:55:10] 2025-11-27 21:54:34,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:55:10] 2025-11-27 21:54:34,579 | INFO     | did not find any defunct processes belonging to 17890
[2025-11-27 22:55:10] 2025-11-27 21:54:34,581 | INFO     | did not find any defunct processes belonging to 17890
[2025-11-27 22:55:10] 2025-11-27 21:54:34,608 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:55:10] 2025-11-27 21:54:34,608 | INFO     | ready for new job
[2025-11-27 22:55:10] 2025-11-27 21:54:34,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:55:10] 2025-11-27 21:54:34,614 | INFO     | ***************************************
[2025-11-27 22:55:10] 2025-11-27 21:54:34,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:55:10] 2025-11-27 21:54:34,614 | INFO     | ***************************************
[2025-11-27 22:55:10] 2025-11-27 21:54:34,614 | INFO     | 
[2025-11-27 22:55:10] 2025-11-27 21:54:34,615 | INFO     | pilot is running in a VM
[2025-11-27 22:55:10] 2025-11-27 21:54:34,615 | INFO     | architecture information:
[2025-11-27 22:55:10] 2025-11-27 21:54:34,622 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:55:10] 2025-11-27 21:54:34,845 | INFO     | cat /etc/os-release:
[2025-11-27 22:55:10] NAME="CentOS Linux"
[2025-11-27 22:55:10] VERSION="7 (Core)"
[2025-11-27 22:55:10] ID="centos"
[2025-11-27 22:55:10] ID_LIKE="rhel fedora"
[2025-11-27 22:55:10] VERSION_ID="7"
[2025-11-27 22:55:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:55:10] ANSI_COLOR="0;31"
[2025-11-27 22:55:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:55:10] HOME_URL="https://www.centos.org/"
[2025-11-27 22:55:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:55:10] 
[2025-11-27 22:55:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:55:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:55:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:55:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:55:10] 
[2025-11-27 22:55:10] 2025-11-27 21:54:34,846 | INFO     | ***************************************
[2025-11-27 22:55:10] 2025-11-27 21:54:35,349 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 22:55:10] 2025-11-27 21:54:35,524 | INFO     | sufficient remaining disk space (495387148288 B)
[2025-11-27 22:55:10] 2025-11-27 21:54:35,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:55:10] 2025-11-27 21:54:35,524 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:55:10] 2025-11-27 21:54:35,524 | INFO     | update_server=False
[2025-11-27 22:55:10] 2025-11-27 21:54:35,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:55:10] 2025-11-27 21:54:35,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:55:10] 2025-11-27 21:54:35,529 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:55:10] 2025-11-27 21:54:35,529 | INFO     | aborting loop
[2025-11-27 22:55:10] 2025-11-27 21:54:36,199 | INFO     | all data control threads have been joined
[2025-11-27 22:55:10] 2025-11-27 21:54:36,344 | INFO     | all payload control threads have been joined
[2025-11-27 22:55:10] 2025-11-27 21:54:36,531 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:36,535 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:36,536 | INFO     | [job] validate thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,071 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,096 | INFO     | all job control threads have been joined
[2025-11-27 22:55:10] 2025-11-27 21:54:37,120 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,205 | INFO     | [data] control thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,264 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,350 | INFO     | [payload] control thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,496 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,533 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,685 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,743 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:37,995 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:38,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:55:10] 2025-11-27 21:54:38,102 | INFO     | [job] control thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:38,804 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:55:10] 2025-11-27 21:54:39,065 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:54:42,813 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:55:10] 2025-11-27 21:55:00,265 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:55:10] 2025-11-27 21:55:00,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015817996096)>', '<ExcThread(monitor, started 140015237580544)>']
[2025-11-27 22:55:10] 2025-11-27 21:55:05,766 | INFO     | PID=11320 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 22:55:10] 2025-11-27 21:55:05,766 | INFO     | .. there are 9 such processes running
[2025-11-27 22:55:10] 2025-11-27 21:55:05,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:55:10] 2025-11-27 21:55:05,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:55:10] 2025-11-27 21:55:05,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:55:10] 2025-11-27 21:55:05,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:55:10] 2025-11-27 21:55:05,767 | INFO     | [monitor] control thread has ended
[2025-11-27 22:55:10] 2025-11-27 21:55:05,885 | INFO     | all workflow threads have been joined
[2025-11-27 22:55:10] 2025-11-27 21:55:05,885 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:55:10] 2025-11-27 21:55:05,885 | INFO     | traces error code: 0
[2025-11-27 22:55:10] 2025-11-27 21:55:05,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:55:10] 2025-11-27 21:55:06,325 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:55:10] 2025-11-27 21:55:06,364 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:55:10] 2025-11-27 21:55:06,435 [wrapper] pilotpid: 11320
[2025-11-27 22:55:10] 2025-11-27 21:55:06,526 [wrapper] Pilot exit status: 0
[2025-11-27 22:55:10] 2025-11-27 21:55:06,915 [wrapper] pandaids: 6895379555
[2025-11-27 22:55:10] 2025-11-27 21:55:07,849 [wrapper] cleanup supervisor_pilot 20987 11321
[2025-11-27 22:55:10] 2025-11-27 21:55:07,905 [wrapper] Test setup, not cleaning
[2025-11-27 22:55:10] 2025-11-27 21:55:07,953 [wrapper] apfmon messages muted
[2025-11-27 22:55:10] 2025-11-27 21:55:07,988 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:55:10] 2025-11-27 21:55:08,021 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:55:10]  *** Error codes and diagnostics ***
[2025-11-27 22:55:10]     "exeErrorCode": 0,
[2025-11-27 22:55:10]     "exeErrorDiag": "",
[2025-11-27 22:55:10]     "pilotErrorCode": 0,
[2025-11-27 22:55:10]     "pilotErrorDiag": "",
[2025-11-27 22:55:10]  *** Listing of results directory ***
[2025-11-27 22:55:10] total 1331916
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc    576529 Nov 24 03:14 pilot3.tar.gz
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc      5112 Nov 24 03:26 queuedata.json
[2025-11-27 22:55:10] -rwx------. 1 boinc boinc     36292 Nov 24 03:28 runpilot2-wrapper.sh
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:55:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:27 run_atlas
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:27 job.xml
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc      6392 Nov 26 23:27 init_data.xml
[2025-11-27 22:55:10] -rw-r--r--. 2 boinc boinc 410765619 Nov 26 23:27 EVNT.47483658._000982.pool.root.1
[2025-11-27 22:55:10] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:27 start_atlas.sh
[2025-11-27 22:55:10] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:27 shared
[2025-11-27 22:55:10] -rw-r--r--. 2 boinc boinc    590104 Nov 26 23:27 input.tar.gz
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:27 boinc_lockfile
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc      2785 Nov 26 23:27 pandaJob.out
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc    991546 Nov 26 23:31 agis_schedconf.cvmfs.json
[2025-11-27 22:55:10] drwx------. 5 boinc boinc      4096 Nov 26 23:31 pilot3
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc       533 Nov 27 22:30 boinc_task_state.xml
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc 921866925 Nov 27 22:51 HITS.47556137._009683.pool.root.1
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc      1026 Nov 27 22:52 memory_monitor_summary.json
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc   1516240 Nov 27 22:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc   2456479 Nov 27 22:52 log.47556137._009683.job.log.tgz.1
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc      8631 Nov 27 22:54 heartbeat.json
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc        29 Nov 27 22:54 wrapper_checkpoint.txt
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc      8192 Nov 27 22:54 boinc_mmap_file
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc        95 Nov 27 22:55 pilot_heartbeat.json
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc      4884 Nov 27 22:55 pilotlog.txt
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc  11214748 Nov 27 22:55 log.47556137._009683.job.log.1
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc       353 Nov 27 22:55 output.list
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc       620 Nov 27 22:55 runtime_log
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc  13690880 Nov 27 22:55 result.tar.gz
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc       662 Nov 27 22:55 SrzNDmaUbh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3LLKDmAkh2fn.diag
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc      8817 Nov 27 22:55 runtime_log.err
[2025-11-27 22:55:10] -rw-r--r--. 1 boinc boinc     21498 Nov 27 22:55 stderr.txt
[2025-11-27 22:55:10] HITS file was successfully produced:
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc 921866925 Nov 27 22:51 shared/HITS.pool.root.1
[2025-11-27 22:55:10]  *** Contents of shared directory: ***
[2025-11-27 22:55:10] total 1315372
[2025-11-27 22:55:10] -rw-r--r--. 2 boinc boinc 410765619 Nov 26 23:27 ATLAS.root_0
[2025-11-27 22:55:10] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:27 start_atlas.sh
[2025-11-27 22:55:10] -rw-r--r--. 2 boinc boinc    590104 Nov 26 23:27 input.tar.gz
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc 921866925 Nov 27 22:51 HITS.pool.root.1
[2025-11-27 22:55:10] -rw-------. 1 boinc boinc  13690880 Nov 27 22:55 result.tar.gz
22:55:12 (7540): run_atlas exited; CPU time 316447.486716
22:55:12 (7540): called boinc_finish(0)

</stderr_txt>
]]>

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