Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:37:24 (28414): wrapper (7.7.26015): starting
00:37:24 (28414): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:37:24] Arguments: --nthreads 8
[2025-11-27 00:37:24] Threads: 8
[2025-11-27 00:37:24] Checking for CVMFS
[2025-11-27 00:37:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:37:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:37:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:37:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:37:27] 2.11.2.0 17186 286043 139964 153340 0 85 19118101 25165825 1288 130560 14 141585445 99.887 75723515 2864 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:37:27] CVMFS is ok
[2025-11-27 00:37:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:37:27] Checking for apptainer binary...
[2025-11-27 00:37:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:37:27] Running /usr/bin/apptainer --version
[2025-11-27 00:37:27] apptainer version 1.3.2-1.el7
[2025-11-27 00:37:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:37:48] cg-vwn311.simple-grid.lan
[2025-11-27 00:37:48] apptainer works
[2025-11-27 00:37:48] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:37:48] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:37:48] Starting ATLAS job with PandaID=6895365511
[2025-11-27 00:37:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:58:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:58:35] 2025-11-27 22:57:40,925 | INFO     | monitor loop #5641: job 0:6895365511 is in state 'finished'
[2025-11-27 23:58:35] 2025-11-27 22:57:40,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:58:35] 2025-11-27 22:57:42,883 | INFO     | time since job start (83743s) is within the limit (172800.0s)
[2025-11-27 23:58:35] 2025-11-27 22:57:43,434 | INFO     | monitor loop #5642: job 0:6895365511 is in state 'finished'
[2025-11-27 23:58:35] 2025-11-27 22:57:43,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:58:35] 2025-11-27 22:57:44,890 | INFO     | time since job start (83745s) is within the limit (172800.0s)
[2025-11-27 23:58:35] 2025-11-27 22:57:45,353 [wrapper] supervise_pilot (15 min periods counter: 94)
[2025-11-27 23:58:35] 2025-11-27 22:57:45,942 | INFO     | monitor loop #5643: job 0:6895365511 is in state 'finished'
[2025-11-27 23:58:35] 2025-11-27 22:57:45,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:58:35] 2025-11-27 22:57:46,897 | INFO     | time since job start (83747s) is within the limit (172800.0s)
[2025-11-27 23:58:35] 2025-11-27 22:57:48,448 | INFO     | monitor loop #5644: job 0:6895365511 is in state 'finished'
[2025-11-27 23:58:35] 2025-11-27 22:57:48,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:58:35] 2025-11-27 22:57:48,904 | INFO     | time since job start (83749s) is within the limit (172800.0s)
[2025-11-27 23:58:35] 2025-11-27 22:57:50,914 | INFO     | time since job start (83751s) is within the limit (172800.0s)
[2025-11-27 23:58:35] 2025-11-27 22:57:50,959 | INFO     | monitor loop #5645: job 0:6895365511 is in state 'finished'
[2025-11-27 23:58:35] 2025-11-27 22:57:50,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,401 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:58:35] 2025-11-27 22:57:51,404 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:58:35] 2025-11-27 22:57:51,406 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895365511/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,407 | INFO     | extracted standard info from prmon json
[2025-11-27 23:58:35] 2025-11-27 22:57:51,407 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:58:35] 2025-11-27 22:57:51,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:58:35] 2025-11-27 22:57:51,455 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:58:35] 2025-11-27 22:57:51,457 | INFO     | sum of square deviations: 786903117950.9282
[2025-11-27 23:58:35] 2025-11-27 22:57:51,562 | INFO     | sum of deviations: 2058082540522.3594
[2025-11-27 23:58:35] 2025-11-27 22:57:51,562 | INFO     | mean x: 1764242569.5667155
[2025-11-27 23:58:35] 2025-11-27 22:57:51,562 | INFO     | mean y: 2842926.056451613
[2025-11-27 23:58:35] 2025-11-27 22:57:51,562 | INFO     | intersect: -4611393244.625477
[2025-11-27 23:58:35] 2025-11-27 22:57:51,564 | INFO     | chi2: 20.79938007979842
[2025-11-27 23:58:35] 2025-11-27 22:57:51,566 | INFO     | sum of square deviations: 778281614015.2184
[2025-11-27 23:58:35] 2025-11-27 22:57:51,646 | INFO     | sum of deviations: 2507487081210.892
[2025-11-27 23:58:35] 2025-11-27 22:57:51,646 | INFO     | mean x: 1764242417.07064
[2025-11-27 23:58:35] 2025-11-27 22:57:51,646 | INFO     | mean y: 2850874.3031640914
[2025-11-27 23:58:35] 2025-11-27 22:57:51,646 | INFO     | intersect: -5681229270.036987
[2025-11-27 23:58:35] 2025-11-27 22:57:51,648 | INFO     | chi2: 17.54967757762274
[2025-11-27 23:58:35] 2025-11-27 22:57:51,648 | INFO     | current chi2=17.54967757762274 (change=15.6240353784966 %)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,648 | INFO     | right removable region: 1358
[2025-11-27 23:58:35] 2025-11-27 22:57:51,650 | INFO     | sum of square deviations: 778280726465.2184
[2025-11-27 23:58:35] 2025-11-27 22:57:51,721 | INFO     | sum of deviations: 1531810381059.6375
[2025-11-27 23:58:35] 2025-11-27 22:57:51,721 | INFO     | mean x: 1764242722.07064
[2025-11-27 23:58:35] 2025-11-27 22:57:51,722 | INFO     | mean y: 2852232.128771155
[2025-11-27 23:58:35] 2025-11-27 22:57:51,722 | INFO     | intersect: -3469526338.327186
[2025-11-27 23:58:35] 2025-11-27 22:57:51,723 | INFO     | chi2: 16.91052670600993
[2025-11-27 23:58:35] 2025-11-27 22:57:51,723 | INFO     | current chi2=16.91052670600993 (change=18.69696769263607 %)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,724 | INFO     | left removable region: 10
[2025-11-27 23:58:35] 2025-11-27 22:57:51,725 | INFO     | sum of square deviations: 759534786014.6644
[2025-11-27 23:58:35] 2025-11-27 22:57:51,788 | INFO     | sum of deviations: 1760678362124.9314
[2025-11-27 23:58:35] 2025-11-27 22:57:51,788 | INFO     | mean x: 1764242691.578635
[2025-11-27 23:58:35] 2025-11-27 22:57:51,789 | INFO     | mean y: 2867711.712908012
[2025-11-27 23:58:35] 2025-11-27 22:57:51,789 | INFO     | intersect: -4086825071.021046
[2025-11-27 23:58:35] 2025-11-27 22:57:51,790 | INFO     | chi2: 11.323130972917463
[2025-11-27 23:58:35] 2025-11-27 22:57:51,791 | INFO     | current memory leak: 2.32 B/s (using 1348 data points, chi2=11.32)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | ..............................
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | . Timing measurements:
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | . get job = 0 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | . initial setup = 11 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | . payload setup = 142 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | . stage-in = 0 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,792 | INFO     | . payload execution = 83323 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,793 | INFO     | . stage-out = 7 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,793 | INFO     | . log creation = 2 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,793 | INFO     | ..............................
[2025-11-27 23:58:35] 2025-11-27 22:57:51,897 | INFO     | 
[2025-11-27 23:58:35] 2025-11-27 22:57:51,897 | INFO     | job summary report
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | --------------------------------------------------
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | PanDA job id: 6895365511
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | task id: 47556137
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | errors: (none)
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | pilot state: finished 
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | transexitcode: 0
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | exeerrorcode: 0
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | exeerrordiag: 
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | exitcode: 0
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | exitmsg: OK
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | cpuconsumptiontime: 315361 s
[2025-11-27 23:58:35] 2025-11-27 22:57:51,898 | INFO     | nevents: 1000
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | neventsw: 0
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | pid: 6377
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | pgrp: 6377
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | corecount: 8
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | event service: False
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 44: 2284427, 55: 2284583, 66: 2284611, 77: 2284639, 86: 2284957, 87: 2284985, 83469: 2345698
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | --------------------------------------------------
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | 
[2025-11-27 23:58:35] 2025-11-27 22:57:51,899 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-27 23:58:35] 2025-11-27 22:57:52,445 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,446 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,446 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,446 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,446 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,447 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | job 6895365511 has completed (purged errors)
[2025-11-27 23:58:35] 2025-11-27 22:57:52,448 | INFO     | overall cleanup function is called
[2025-11-27 23:58:35] 2025-11-27 22:57:53,477 | INFO     | --- collectZombieJob: --- 10, [6377]
[2025-11-27 23:58:35] 2025-11-27 22:57:53,477 | INFO     | zombie collector waiting for pid 6377
[2025-11-27 23:58:35] 2025-11-27 22:57:53,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:58:35] 2025-11-27 22:57:53,478 | INFO     | collected zombie processes
[2025-11-27 23:58:35] 2025-11-27 22:57:53,478 | INFO     | will attempt to kill all subprocesses of pid=6377
[2025-11-27 23:58:35] 2025-11-27 22:57:53,615 | INFO     | process IDs to be killed: [6377] (in reverse order)
[2025-11-27 23:58:35] 2025-11-27 22:57:54,066 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:58:35] 2025-11-27 22:57:54,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:58:35] 2025-11-27 22:57:54,069 | INFO     | did not find any defunct processes belonging to 6377
[2025-11-27 23:58:35] 2025-11-27 22:57:54,072 | INFO     | did not find any defunct processes belonging to 6377
[2025-11-27 23:58:35] 2025-11-27 22:57:54,080 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:58:35] 2025-11-27 22:57:54,080 | INFO     | ready for new job
[2025-11-27 23:58:35] 2025-11-27 22:57:54,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:58:35] 2025-11-27 22:57:54,086 | INFO     | ***************************************
[2025-11-27 23:58:35] 2025-11-27 22:57:54,086 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:58:35] 2025-11-27 22:57:54,086 | INFO     | ***************************************
[2025-11-27 23:58:35] 2025-11-27 22:57:54,086 | INFO     | 
[2025-11-27 23:58:35] 2025-11-27 22:57:54,087 | INFO     | pilot is running in a VM
[2025-11-27 23:58:35] 2025-11-27 22:57:54,087 | INFO     | architecture information:
[2025-11-27 23:58:35] 2025-11-27 22:57:54,088 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:58:35] 2025-11-27 22:57:54,331 | INFO     | cat /etc/os-release:
[2025-11-27 23:58:35] NAME="CentOS Linux"
[2025-11-27 23:58:35] VERSION="7 (Core)"
[2025-11-27 23:58:35] ID="centos"
[2025-11-27 23:58:35] ID_LIKE="rhel fedora"
[2025-11-27 23:58:35] VERSION_ID="7"
[2025-11-27 23:58:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:58:35] ANSI_COLOR="0;31"
[2025-11-27 23:58:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:58:35] HOME_URL="https://www.centos.org/"
[2025-11-27 23:58:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:58:35] 
[2025-11-27 23:58:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:58:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:58:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:58:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:58:35] 
[2025-11-27 23:58:35] 2025-11-27 22:57:54,332 | INFO     | ***************************************
[2025-11-27 23:58:35] 2025-11-27 22:57:54,835 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-27 23:58:35] 2025-11-27 22:57:54,956 | INFO     | sufficient remaining disk space (495389245440 B)
[2025-11-27 23:58:35] 2025-11-27 22:57:54,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:58:35] 2025-11-27 22:57:54,956 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:58:35] 2025-11-27 22:57:54,956 | INFO     | update_server=False
[2025-11-27 23:58:35] 2025-11-27 22:57:54,957 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:58:35] 2025-11-27 22:57:54,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:58:35] 2025-11-27 22:57:54,957 | INFO     | aborting loop
[2025-11-27 23:58:35] 2025-11-27 22:57:55,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:58:35] 2025-11-27 22:57:55,343 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:58:35] 2025-11-27 22:57:55,794 | INFO     | all payload control threads have been joined
[2025-11-27 23:58:35] 2025-11-27 22:57:55,852 | INFO     | all data control threads have been joined
[2025-11-27 23:58:35] 2025-11-27 22:57:55,962 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:55,963 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,131 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,225 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,234 | INFO     | [job] validate thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,269 | INFO     | all job control threads have been joined
[2025-11-27 23:58:35] 2025-11-27 22:57:56,357 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,757 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,800 | INFO     | [payload] control thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,858 | INFO     | [data] control thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:56,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:58:35] 2025-11-27 22:57:57,198 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:57,236 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:57,275 | INFO     | [job] control thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:57,294 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:57,917 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:57:59,352 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:58:35] 2025-11-27 22:58:24,077 | INFO     | PID=32227 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:58:35] 2025-11-27 22:58:24,077 | INFO     | .. there are 9 such processes running
[2025-11-27 23:58:35] 2025-11-27 22:58:24,078 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:58:35] 2025-11-27 22:58:24,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:58:35] 2025-11-27 22:58:24,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:58:35] 2025-11-27 22:58:24,679 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:58:35] 2025-11-27 22:58:26,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544920102720)>', '<ExcThread(monitor, started 140544340649728)>']
[2025-11-27 23:58:35] 2025-11-27 22:58:27,096 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:58:35] 2025-11-27 22:58:27,096 | INFO     | [monitor] control thread has ended
[2025-11-27 23:58:35] 2025-11-27 22:58:31,249 | INFO     | all workflow threads have been joined
[2025-11-27 23:58:35] 2025-11-27 22:58:31,249 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:58:35] 2025-11-27 22:58:31,249 | INFO     | traces error code: 0
[2025-11-27 23:58:35] 2025-11-27 22:58:31,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:58:35] 2025-11-27 22:58:31,466 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:58:35] 2025-11-27 22:58:31,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:58:35] 2025-11-27 22:58:31,622 [wrapper] pilotpid: 32227
[2025-11-27 23:58:35] 2025-11-27 22:58:31,724 [wrapper] Pilot exit status: 0
[2025-11-27 23:58:35] 2025-11-27 22:58:32,068 [wrapper] pandaids: 6895365511
[2025-11-27 23:58:35] 2025-11-27 22:58:32,583 [wrapper] cleanup supervisor_pilot 11804 32228
[2025-11-27 23:58:35] 2025-11-27 22:58:32,698 [wrapper] Test setup, not cleaning
[2025-11-27 23:58:35] 2025-11-27 22:58:32,805 [wrapper] apfmon messages muted
[2025-11-27 23:58:35] 2025-11-27 22:58:32,913 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:58:35] 2025-11-27 22:58:33,006 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:58:35]  *** Error codes and diagnostics ***
[2025-11-27 23:58:35]     "exeErrorCode": 0,
[2025-11-27 23:58:35]     "exeErrorDiag": "",
[2025-11-27 23:58:35]     "pilotErrorCode": 0,
[2025-11-27 23:58:35]     "pilotErrorDiag": "",
[2025-11-27 23:58:35]  *** Listing of results directory ***
[2025-11-27 23:58:35] total 1325148
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-11-27 23:58:35] -rwx------. 1 boinc boinc     36292 Nov 23 18:12 runpilot2-wrapper.sh
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc      5112 Nov 23 18:12 queuedata.json
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:58:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:37 run_atlas
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:37 job.xml
[2025-11-27 23:58:35] -rw-r--r--. 2 boinc boinc 408582364 Nov 27 00:37 EVNT.47483658._000821.pool.root.1
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc      6391 Nov 27 00:37 init_data.xml
[2025-11-27 23:58:35] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:37 start_atlas.sh
[2025-11-27 23:58:35] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:37 shared
[2025-11-27 23:58:35] -rw-r--r--. 2 boinc boinc    590097 Nov 27 00:37 input.tar.gz
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:37 boinc_lockfile
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc      2785 Nov 27 00:37 pandaJob.out
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc    991538 Nov 27 00:41 agis_schedconf.cvmfs.json
[2025-11-27 23:58:35] drwx------. 5 boinc boinc      4096 Nov 27 00:41 pilot3
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:29 boinc_task_state.xml
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc 917285839 Nov 27 23:54 HITS.47556137._008073.pool.root.1
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc      1028 Nov 27 23:56 memory_monitor_summary.json
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc   1516240 Nov 27 23:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc   2451256 Nov 27 23:56 log.47556137._008073.job.log.tgz.1
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc      8627 Nov 27 23:57 heartbeat.json
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:58 boinc_mmap_file
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:58 wrapper_checkpoint.txt
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc        95 Nov 27 23:58 pilot_heartbeat.json
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc      4885 Nov 27 23:58 pilotlog.txt
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc  11136816 Nov 27 23:58 log.47556137._008073.job.log.1
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc       353 Nov 27 23:58 output.list
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:58 runtime_log
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc  13608960 Nov 27 23:58 result.tar.gz
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc       662 Nov 27 23:58 tKvKDm5oSh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ3KKDmpMnLnm.diag
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc      8833 Nov 27 23:58 runtime_log.err
[2025-11-27 23:58:35] -rw-r--r--. 1 boinc boinc     21410 Nov 27 23:58 stderr.txt
[2025-11-27 23:58:35] HITS file was successfully produced:
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc 917285839 Nov 27 23:54 shared/HITS.pool.root.1
[2025-11-27 23:58:35]  *** Contents of shared directory: ***
[2025-11-27 23:58:35] total 1308684
[2025-11-27 23:58:35] -rw-r--r--. 2 boinc boinc 408582364 Nov 27 00:37 ATLAS.root_0
[2025-11-27 23:58:35] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:37 start_atlas.sh
[2025-11-27 23:58:35] -rw-r--r--. 2 boinc boinc    590097 Nov 27 00:37 input.tar.gz
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc 917285839 Nov 27 23:54 HITS.pool.root.1
[2025-11-27 23:58:35] -rw-------. 1 boinc boinc  13608960 Nov 27 23:58 result.tar.gz
23:58:37 (28414): run_atlas exited; CPU time 315925.892475
23:58:37 (28414): called boinc_finish(0)

</stderr_txt>
]]>

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