Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:17:54 (9970): wrapper (7.7.26015): starting
00:17:54 (9970): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:17:54] Arguments: --nthreads 8
[2025-11-27 00:17:54] Threads: 8
[2025-11-27 00:17:54] Checking for CVMFS
[2025-11-27 00:17:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:17:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:17:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:17:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:17:57] 2.11.2.0 11529 223181 140196 153340 1 18 23407516 25165824 1288 130560 9 92870244 99.894 40829858 2495 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:17:57] CVMFS is ok
[2025-11-27 00:17:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:17:57] Checking for apptainer binary...
[2025-11-27 00:17:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:17:57] Running /usr/bin/apptainer --version
[2025-11-27 00:17:57] apptainer version 1.3.2-1.el7
[2025-11-27 00:17:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:18:09] cg-vwn354.simple-grid.lan
[2025-11-27 00:18:09] apptainer works
[2025-11-27 00:18:09] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:18:09] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:18:09] Starting ATLAS job with PandaID=6895355230
[2025-11-27 00:18:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:52:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:52:07] 2025-11-27 22:51:02,322 | INFO     | time since job start (84512s) is within the limit (172800.0s)
[2025-11-27 23:52:07] 2025-11-27 22:51:04,327 | INFO     | time since job start (84514s) is within the limit (172800.0s)
[2025-11-27 23:52:07] 2025-11-27 22:51:04,702 | INFO     | monitor loop #5682: job 0:6895355230 is in state 'finished'
[2025-11-27 23:52:07] 2025-11-27 22:51:04,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:07] 2025-11-27 22:51:05,579 | INFO     | PID=13812 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:52:07] 2025-11-27 22:51:05,579 | INFO     | .. there are 9 such processes running
[2025-11-27 23:52:07] 2025-11-27 22:51:06,579 | INFO     | time since job start (84516s) is within the limit (172800.0s)
[2025-11-27 23:52:07] 2025-11-27 22:51:07,207 | INFO     | monitor loop #5683: job 0:6895355230 is in state 'finished'
[2025-11-27 23:52:07] 2025-11-27 22:51:07,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:07] 2025-11-27 22:51:08,586 | INFO     | time since job start (84518s) is within the limit (172800.0s)
[2025-11-27 23:52:07] 2025-11-27 22:51:09,712 | INFO     | monitor loop #5684: job 0:6895355230 is in state 'finished'
[2025-11-27 23:52:07] 2025-11-27 22:51:09,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:07] 2025-11-27 22:51:10,593 | INFO     | time since job start (84520s) is within the limit (172800.0s)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,147 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:52:07] 2025-11-27 22:51:12,155 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:52:07] 2025-11-27 22:51:12,156 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895355230/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,157 | INFO     | extracted standard info from prmon json
[2025-11-27 23:52:07] 2025-11-27 22:51:12,157 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:52:07] 2025-11-27 22:51:12,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:52:07] 2025-11-27 22:51:12,181 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:52:07] 2025-11-27 22:51:12,184 | INFO     | sum of square deviations: 807855248555.2318
[2025-11-27 23:52:07] 2025-11-27 22:51:12,217 | INFO     | monitor loop #5685: job 0:6895355230 is in state 'finished'
[2025-11-27 23:52:07] 2025-11-27 22:51:12,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,275 | INFO     | sum of deviations: 3331963396991.394
[2025-11-27 23:52:07] 2025-11-27 22:51:12,275 | INFO     | mean x: 1764241797.5588663
[2025-11-27 23:52:07] 2025-11-27 22:51:12,275 | INFO     | mean y: 2838148.2049418604
[2025-11-27 23:52:07] 2025-11-27 22:51:12,275 | INFO     | intersect: -7273699453.57626
[2025-11-27 23:52:07] 2025-11-27 22:51:12,277 | INFO     | chi2: 23.82168605797315
[2025-11-27 23:52:07] 2025-11-27 22:51:12,279 | INFO     | sum of square deviations: 799081091204.6044
[2025-11-27 23:52:07] 2025-11-27 22:51:12,397 | INFO     | sum of deviations: 3794545916171.972
[2025-11-27 23:52:07] 2025-11-27 22:51:12,398 | INFO     | mean x: 1764241645.062728
[2025-11-27 23:52:07] 2025-11-27 22:51:12,398 | INFO     | mean y: 2846187.6630196935
[2025-11-27 23:52:07] 2025-11-27 22:51:12,398 | INFO     | intersect: -8374896701.136201
[2025-11-27 23:52:07] 2025-11-27 22:51:12,415 | INFO     | chi2: 20.50730881857248
[2025-11-27 23:52:07] 2025-11-27 22:51:12,415 | INFO     | current chi2=20.50730881857248 (change=13.913277302600266 %)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,415 | INFO     | right removable region: 1370
[2025-11-27 23:52:07] 2025-11-27 22:51:12,417 | INFO     | sum of square deviations: 799080202434.6044
[2025-11-27 23:52:07] 2025-11-27 22:51:12,570 | INFO     | sum of deviations: 2764634287280.9565
[2025-11-27 23:52:07] 2025-11-27 22:51:12,570 | INFO     | mean x: 1764241950.062728
[2025-11-27 23:52:07] 2025-11-27 22:51:12,570 | INFO     | mean y: 2848007.151714077
[2025-11-27 23:52:07] 2025-11-27 22:51:12,571 | INFO     | intersect: -6101024634.596035
[2025-11-27 23:52:07] 2025-11-27 22:51:12,572 | INFO     | chi2: 19.24443925631424
[2025-11-27 23:52:07] 2025-11-27 22:51:12,573 | INFO     | current chi2=19.24443925631424 (change=19.214621460964548 %)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,573 | INFO     | left removable region: 10
[2025-11-27 23:52:07] 2025-11-27 22:51:12,575 | INFO     | sum of square deviations: 780000305649.0812
[2025-11-27 23:52:07] 2025-11-27 22:51:12,619 | INFO     | time since job start (84522s) is within the limit (172800.0s)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,637 | INFO     | sum of deviations: 2862728707410.686
[2025-11-27 23:52:07] 2025-11-27 22:51:12,638 | INFO     | mean x: 1764241919.5713236
[2025-11-27 23:52:07] 2025-11-27 22:51:12,638 | INFO     | mean y: 2866507.776470588
[2025-11-27 23:52:07] 2025-11-27 22:51:12,638 | INFO     | intersect: -6472189916.4275255
[2025-11-27 23:52:07] 2025-11-27 22:51:12,640 | INFO     | chi2: 11.810846845065722
[2025-11-27 23:52:07] 2025-11-27 22:51:12,640 | INFO     | current memory leak: 3.67 B/s (using 1360 data points, chi2=11.81)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,642 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,642 | INFO     | ..............................
[2025-11-27 23:52:07] 2025-11-27 22:51:12,642 | INFO     | . Timing measurements:
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . get job = 0 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . initial setup = 7 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . payload setup = 161 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . stage-in = 1 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . payload execution = 84075 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . stage-out = 5 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | . log creation = 1 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,643 | INFO     | ..............................
[2025-11-27 23:52:07] 2025-11-27 22:51:12,770 | INFO     | 
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | job summary report
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | --------------------------------------------------
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | PanDA job id: 6895355230
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | task id: 47556137
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | errors: (none)
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | pilot state: finished 
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | transexitcode: 0
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | exeerrorcode: 0
[2025-11-27 23:52:07] 2025-11-27 22:51:12,771 | INFO     | exeerrordiag: 
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | exitcode: 0
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | exitmsg: OK
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | cpuconsumptiontime: 316621 s
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | nevents: 1000
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | neventsw: 0
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | pid: 20386
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | pgrp: 20386
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | corecount: 8
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | event service: False
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | sizes: {0: 2284143, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 45: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 88: 2284722, 96: 2285292, 98
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | --------------------------------------------------
[2025-11-27 23:52:07] 2025-11-27 22:51:12,772 | INFO     | 
[2025-11-27 23:52:07] 2025-11-27 22:51:12,773 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 23:52:07] 2025-11-27 22:51:13,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:52:07] 2025-11-27 22:51:13,224 | INFO     | job 6895355230 has completed (purged errors)
[2025-11-27 23:52:07] 2025-11-27 22:51:13,225 | INFO     | overall cleanup function is called
[2025-11-27 23:52:07] 2025-11-27 22:51:14,240 | INFO     | --- collectZombieJob: --- 10, [20386]
[2025-11-27 23:52:07] 2025-11-27 22:51:14,241 | INFO     | zombie collector waiting for pid 20386
[2025-11-27 23:52:07] 2025-11-27 22:51:14,241 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:52:07] 2025-11-27 22:51:14,241 | INFO     | collected zombie processes
[2025-11-27 23:52:07] 2025-11-27 22:51:14,241 | INFO     | will attempt to kill all subprocesses of pid=20386
[2025-11-27 23:52:07] 2025-11-27 22:51:14,349 | INFO     | process IDs to be killed: [20386] (in reverse order)
[2025-11-27 23:52:07] 2025-11-27 22:51:14,959 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:52:07] 2025-11-27 22:51:14,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:52:07] 2025-11-27 22:51:14,962 | INFO     | did not find any defunct processes belonging to 20386
[2025-11-27 23:52:07] 2025-11-27 22:51:14,965 | INFO     | did not find any defunct processes belonging to 20386
[2025-11-27 23:52:07] 2025-11-27 22:51:15,023 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:52:07] 2025-11-27 22:51:15,023 | INFO     | ready for new job
[2025-11-27 23:52:07] 2025-11-27 22:51:15,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:52:07] 2025-11-27 22:51:15,028 | INFO     | ***************************************
[2025-11-27 23:52:07] 2025-11-27 22:51:15,028 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:52:07] 2025-11-27 22:51:15,028 | INFO     | ***************************************
[2025-11-27 23:52:07] 2025-11-27 22:51:15,028 | INFO     | 
[2025-11-27 23:52:07] 2025-11-27 22:51:15,029 | INFO     | pilot is running in a VM
[2025-11-27 23:52:07] 2025-11-27 22:51:15,029 | INFO     | architecture information:
[2025-11-27 23:52:07] 2025-11-27 22:51:15,032 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:52:07] 2025-11-27 22:51:15,241 | INFO     | cat /etc/os-release:
[2025-11-27 23:52:07] NAME="CentOS Linux"
[2025-11-27 23:52:07] VERSION="7 (Core)"
[2025-11-27 23:52:07] ID="centos"
[2025-11-27 23:52:07] ID_LIKE="rhel fedora"
[2025-11-27 23:52:07] VERSION_ID="7"
[2025-11-27 23:52:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:52:07] ANSI_COLOR="0;31"
[2025-11-27 23:52:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:52:07] HOME_URL="https://www.centos.org/"
[2025-11-27 23:52:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:52:07] 
[2025-11-27 23:52:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:52:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:52:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:52:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:52:07] 
[2025-11-27 23:52:07] 2025-11-27 22:51:15,241 | INFO     | ***************************************
[2025-11-27 23:52:07] 2025-11-27 22:51:15,744 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 23:52:07] 2025-11-27 22:51:15,874 | INFO     | sufficient remaining disk space (495286484992 B)
[2025-11-27 23:52:07] 2025-11-27 22:51:15,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:52:07] 2025-11-27 22:51:15,875 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:52:07] 2025-11-27 22:51:15,875 | INFO     | update_server=False
[2025-11-27 23:52:07] 2025-11-27 22:51:15,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:52:07] 2025-11-27 22:51:15,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:52:07] 2025-11-27 22:51:15,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:52:07] 2025-11-27 22:51:15,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:52:07] 2025-11-27 22:51:15,881 | INFO     | aborting loop
[2025-11-27 23:52:07] 2025-11-27 22:51:16,219 | INFO     | all data control threads have been joined
[2025-11-27 23:52:07] 2025-11-27 22:51:16,485 | INFO     | all job control threads have been joined
[2025-11-27 23:52:07] 2025-11-27 22:51:16,500 | INFO     | all payload control threads have been joined
[2025-11-27 23:52:07] 2025-11-27 22:51:16,880 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:16,886 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,225 | INFO     | [data] control thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,274 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,276 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,334 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,338 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,445 | INFO     | [job] validate thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,491 | INFO     | [job] control thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,506 | INFO     | [payload] control thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,730 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,785 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:52:07] 2025-11-27 22:51:17,888 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,916 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:17,951 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:18,791 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:19,884 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:52:07] 2025-11-27 22:51:45,816 | INFO     | PID=13812 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:52:07] 2025-11-27 22:51:45,816 | INFO     | .. there are 9 such processes running
[2025-11-27 23:52:07] 2025-11-27 22:51:45,819 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:52:07] 2025-11-27 22:51:45,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:52:07] 2025-11-27 22:51:45,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:52:07] 2025-11-27 22:51:58,020 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:52:07] 2025-11-27 22:51:58,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715664992064)>', '<ExcThread(monitor, started 140715367573248)>']
[2025-11-27 23:52:07] 2025-11-27 22:51:58,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:52:07] 2025-11-27 22:51:58,897 | INFO     | [monitor] control thread has ended
[2025-11-27 23:52:07] 2025-11-27 22:52:03,885 | INFO     | all workflow threads have been joined
[2025-11-27 23:52:07] 2025-11-27 22:52:03,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:52:07] 2025-11-27 22:52:03,886 | INFO     | traces error code: 0
[2025-11-27 23:52:07] 2025-11-27 22:52:03,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:52:07] 2025-11-27 22:52:04,191 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:52:07] 2025-11-27 22:52:04,279 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:52:07] 2025-11-27 22:52:04,362 [wrapper] pilotpid: 13812
[2025-11-27 23:52:07] 2025-11-27 22:52:04,463 [wrapper] Pilot exit status: 0
[2025-11-27 23:52:07] 2025-11-27 22:52:04,889 [wrapper] pandaids: 6895355230
[2025-11-27 23:52:07] 2025-11-27 22:52:05,652 [wrapper] cleanup supervisor_pilot 10205 13813
[2025-11-27 23:52:07] 2025-11-27 22:52:05,725 [wrapper] Test setup, not cleaning
[2025-11-27 23:52:07] 2025-11-27 22:52:05,827 [wrapper] apfmon messages muted
[2025-11-27 23:52:07] 2025-11-27 22:52:05,931 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:52:07] 2025-11-27 22:52:06,062 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:52:07]  *** Error codes and diagnostics ***
[2025-11-27 23:52:07]     "exeErrorCode": 0,
[2025-11-27 23:52:07]     "exeErrorDiag": "",
[2025-11-27 23:52:07]     "pilotErrorCode": 0,
[2025-11-27 23:52:07]     "pilotErrorDiag": "",
[2025-11-27 23:52:07]  *** Listing of results directory ***
[2025-11-27 23:52:07] total 1338380
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc    576529 Nov 23 07:48 pilot3.tar.gz
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc      5112 Nov 23 08:01 queuedata.json
[2025-11-27 23:52:07] -rwx------. 1 boinc boinc     36292 Nov 23 08:03 runpilot2-wrapper.sh
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:52:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:17 run_atlas
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:17 job.xml
[2025-11-27 23:52:07] -rw-r--r--. 2 boinc boinc 412151785 Nov 27 00:17 EVNT.47483658._000652.pool.root.1
[2025-11-27 23:52:07] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:17 start_atlas.sh
[2025-11-27 23:52:07] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:17 shared
[2025-11-27 23:52:07] -rw-r--r--. 2 boinc boinc    590101 Nov 27 00:17 input.tar.gz
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc      6393 Nov 27 00:17 init_data.xml
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:17 boinc_lockfile
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc      2785 Nov 27 00:18 pandaJob.out
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc    991538 Nov 27 00:22 agis_schedconf.cvmfs.json
[2025-11-27 23:52:07] drwx------. 5 boinc boinc      4096 Nov 27 00:22 pilot3
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:29 boinc_task_state.xml
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc 926998333 Nov 27 23:48 HITS.47556137._006475.pool.root.1
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc      1028 Nov 27 23:49 memory_monitor_summary.json
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc   1516240 Nov 27 23:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc   2458280 Nov 27 23:49 log.47556137._006475.job.log.tgz.1
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc      8632 Nov 27 23:51 heartbeat.json
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:51 wrapper_checkpoint.txt
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:51 boinc_mmap_file
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc        95 Nov 27 23:51 pilot_heartbeat.json
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc      4884 Nov 27 23:52 pilotlog.txt
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc  11264909 Nov 27 23:52 log.47556137._006475.job.log.1
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc       353 Nov 27 23:52 output.list
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:52 runtime_log
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc  13742080 Nov 27 23:52 result.tar.gz
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:52 runtime_log.err
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc       662 Nov 27 23:52 4V5NDmHJJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDiKKDmdiFuhm.diag
[2025-11-27 23:52:07] -rw-r--r--. 1 boinc boinc     21496 Nov 27 23:52 stderr.txt
[2025-11-27 23:52:07] HITS file was successfully produced:
[2025-11-27 23:52:07] -rw-------. 1 boinc boinc 926998333 Nov 27 23:48 shared/HITS.pool.root.1
[2025-11-27 23:52:07]  *** Contents of shared directory: ***
[2025-11-27 23:52:08] total 1321780
[2025-11-27 23:52:08] -rw-r--r--. 2 boinc boinc 412151785 Nov 27 00:17 ATLAS.root_0
[2025-11-27 23:52:08] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:17 start_atlas.sh
[2025-11-27 23:52:08] -rw-r--r--. 2 boinc boinc    590101 Nov 27 00:17 input.tar.gz
[2025-11-27 23:52:08] -rw-------. 1 boinc boinc 926998333 Nov 27 23:48 HITS.pool.root.1
[2025-11-27 23:52:08] -rw-------. 1 boinc boinc  13742080 Nov 27 23:52 result.tar.gz
23:52:09 (9970): run_atlas exited; CPU time 317196.854404
23:52:09 (9970): called boinc_finish(0)

</stderr_txt>
]]>

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